4.0:Information of module
Mutant lwd1_lwd2
In comparison with aerial organ callus inducing medium 12 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0007623 circadian rhythm BP 1.763e-16
GO:0048511 rhythmic process BP 1.763e-16
GO:0008283 cell proliferation BP 6.718e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0046173 polyol biosynthetic process BP 7.154e-13
GO:0010264 myo-inositol hexakisphosphate biosynthet... BP 8.501e-11
GO:0032958 inositol phosphate biosynthetic process BP 8.501e-11
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Mutant lwd1_lwd2		 Log2 signal ratio
aerial organ callus inducing medium 12 h
1 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 1.053 0.003
2 249174_at AT5G42900 COR27, cold regulated gene 27 0.908 0.250
3 256060_at AT1G07050 [CCT motif family protein] 0.882 -0.108
4 253322_at AT4G33980 unknown 0.809 0.399
5 249850_at AT5G23240 DJC76, DNA J protein C76 0.642 0.450
6 249606_at AT5G37260 CIR1, CIRCADIAN 1, RVE2, REVEILLE 2 0.641 -0.861
7 259244_at AT3G07650 BBX7, B-box domain protein 7, COL9, CONSTANS-like 9 0.588 0.012
8 248744_at AT5G48250 BBX8, B-box domain protein 8 0.470 0.295
9 247525_at AT5G61380 APRR1, AtTOC1, TIMING OF CAB EXPRESSION 1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TOC1, TIMING OF CAB EXPRESSION 1 0.463 0.182
10 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.435 0.482
11 248502_at AT5G50450 [HCP-like superfamily protein with MYND-type zinc finger] 0.409 0.051
12 249869_at AT5G23050 AAE17, acyl-activating enzyme 17 0.348 -0.004
13 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.314 -0.027
14 266663_at AT2G25790 SKM1, STERILITY-REGULATING KINASE MEMBER 1 0.302 0.167
15 247867_at AT5G57630 CIPK21, CBL-interacting protein kinase 21, SnRK3.4, SNF1-RELATED PROTEIN KINASE 3.4 0.287 0.296
16 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 0.286 0.465
17 264597_at AT1G04620 HCAR, 7-hydroxymethyl chlorophyll a (HMChl) reductase 0.273 -0.196
18 252387_at AT3G47800 [Galactose mutarotase-like superfamily protein] 0.272 0.158
19 253244_at AT4G34580 AtSFH1, COW1, CAN OF WORMS1, SRH1, SHORT ROOT HAIR 1 0.260 -0.160
20 257076_at AT3G19680 unknown 0.257 0.046
21 252899_at AT4G39530 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.254 0.043
22 258225_at AT3G15630 unknown 0.250 0.181
23 247280_at AT5G64260 EXL2, EXORDIUM like 2 0.248 0.202
24 264045_at AT2G22450 AtRIBA2, RIBA2, homolog of ribA 2 0.240 0.243
25 259377_at AT3G16380 PAB6, poly(A) binding protein 6 0.238 -0.003
26 262211_at AT1G74930 ORA47 0.238 -0.520
27 256832_at AT3G22880 ARLIM15, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, ATDMC1, ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, DMC1, DISRUPTION OF MEIOTIC CONTROL 1 0.234 -0.170
28 262109_at AT1G02730 ATCSLD5, cellulose synthase-like D5, CSLD5, CELLULOSE SYNTHASE LIKE D5, CSLD5, cellulose synthase-like D5, SOS6, SALT OVERLY SENSITIVE 6 0.234 -0.265
29 251432_at AT3G59820 AtLETM1, LETM1, leucine zipper-EF-hand-containing transmembrane protein 1 0.233 0.325
30 260887_at AT1G29160 [Dof-type zinc finger DNA-binding family protein] 0.233 0.166
31 249719_at AT5G35735 [Auxin-responsive family protein] 0.233 0.331
32 246371_at AT1G51940 LYK3, LysM-containing receptor-like kinase 3 0.227 0.267
33 245084_at AT2G23290 AtMYB70, myb domain protein 70, MYB70, myb domain protein 70 0.226 -0.046
34 258376_at AT3G17680 [Kinase interacting (KIP1-like) family protein] 0.220 -0.195
35 263495_at AT2G42530 COR15B, cold regulated 15b 0.219 0.425
36 250228_at AT5G13840 CCS52B, cell cycle switch protein 52 B, FZR3, FIZZY-related 3 0.219 -0.347
37 263179_at AT1G05710 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.215 -0.030
38 265900_at AT2G25730 unknown 0.214 -0.010
39 246212_at AT4G36930 SPT, SPATULA 0.212 0.422
40 266839_at AT2G25930 ELF3, EARLY FLOWERING 3, PYK20 0.212 0.022
41 255331_at AT4G04330 AtRbcX1, RbcX1, homologue of cyanobacterial RbcX 1 0.211 0.118
42 250649_at AT5G06690 WCRKC1, WCRKC thioredoxin 1 0.211 0.277
43 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] 0.211 0.813
44 266320_at AT2G46640 TAC1, Tiller Angle Control 1 0.206 -0.079
45 253156_at AT4G35730 [Regulator of Vps4 activity in the MVB pathway protein] 0.205 -0.133
46 260753_at AT1G49230 AtATL78, ATL78, Arabidopsis T?xicos en Levadura 78 0.203 0.231
47 262503_at AT1G21670 [LOCATED IN: cell wall, plant-type cell wall] 0.201 0.219
48 251735_at AT3G56090 ATFER3, ferritin 3, FER3, ferritin 3 0.197 0.018
49 247603_at AT5G60930 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.196 -0.273
50 249258_at AT5G41650 [Lactoylglutathione lyase / glyoxalase I family protein] 0.196 0.189
51 261202_at AT1G12910 ATAN11, ANTHOCYANIN11, LWD1, LIGHT-REGULATED WD 1 -0.770 0.014
52 248467_at AT5G50800 AtSWEET13, SWEET13 -0.635 -0.034
53 258497_at AT3G02380 ATCOL2, CONSTANS-LIKE 2, BBX3, B-box domain protein 3, COL2, CONSTANS-like 2 -0.615 -1.061
54 249227_at AT5G42180 PER64, peroxidase 64 -0.603 -0.378
55 254496_at AT4G20070 AAH, allantoate amidohydrolase, ATAAH, allantoate amidohydrolase -0.565 -0.178
56 257262_at AT3G21890 BBX31, B-box domain protein 31 -0.536 -0.441
57 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 -0.489 -0.510
58 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 -0.454 -0.190
59 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 -0.454 -0.380
60 250099_at AT5G17300 RVE1, REVEILLE 1 -0.431 -1.009
61 262113_at AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 -0.429 -0.140
62 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 -0.422 -0.253
63 261191_at AT1G32900 GBSS1, granule bound starch synthase 1 -0.379 -0.541
64 256926_at AT3G22540 unknown -0.371 -0.243
65 246403_at AT1G57590 [Pectinacetylesterase family protein] -0.365 -0.169
66 262826_at AT1G13080 CYP71B2, cytochrome P450, family 71, subfamily B, polypeptide 2 -0.364 -0.778
67 251869_at AT3G54500 LNK2, night light-inducible and clock-regulated 2 -0.363 -0.510
68 249769_at AT5G24120 ATSIG5, SIGMA FACTOR 5, SIG5, SIGMA FACTOR 5, SIGE, sigma factor E -0.356 -0.803
69 250665_at AT5G06980 LNK4, night light-inducible and clock-regulated 4 -0.339 -0.174
70 257710_at AT3G27350 unknown -0.334 -0.168
71 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 -0.330 -0.635
72 261456_at AT1G21050 unknown -0.326 0.148
73 245528_at AT4G15530 PPDK, pyruvate orthophosphate dikinase -0.323 0.199
74 246597_at AT5G14760 AO, L-aspartate oxidase, FIN4, FLAGELLIN-INSENSITIVE 4 -0.315 -0.510
75 255627_at AT4G00955 unknown -0.314 -0.106
76 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 -0.312 -0.256
77 261059_at AT1G01250 [Integrase-type DNA-binding superfamily protein] -0.310 -0.052
78 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 -0.309 0.078
79 248207_at AT5G53970 TAT7, tyrosine aminotransferase 7 -0.304 -0.211
80 252917_at AT4G38960 BBX19, B-box domain protein 19 -0.304 -0.514
81 256894_at AT3G21870 CYCP2;1, cyclin p2;1 -0.290 -0.439
82 249134_at AT5G43150 unknown -0.286 -0.233
83 245593_at AT4G14550 IAA14, indole-3-acetic acid inducible 14, SLR, SOLITARY ROOT -0.283 -0.179
84 250744_at AT5G05840 unknown -0.282 -0.008
85 247686_at AT5G59700 [Protein kinase superfamily protein] -0.277 -0.024
86 257254_at AT3G21950 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.276 -0.349
87 264338_at AT1G70300 KUP6, K+ uptake permease 6 -0.274 0.047
88 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] -0.274 0.330
89 251066_at AT5G01880 DAFL2, DAF-Like gene 2 -0.265 0.011
90 251713_at AT3G56080 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.265 -0.644
91 265962_at AT2G37460 UMAMIT12, Usually multiple acids move in and out Transporters 12 -0.261 -0.348
92 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 -0.259 -0.615
93 262412_at AT1G34760 GF14 OMICRON, GRF11, general regulatory factor 11, RHS5, ROOT HAIR SPECIFIC 5 -0.258 0.026
94 256674_at AT3G52360 unknown -0.250 -0.298
95 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 -0.250 -0.199
96 245925_at AT5G28770 AtbZIP63, Arabidopsis thaliana basic leucine zipper 63, BZO2H3 -0.245 -0.293
97 260601_at AT1G55910 ZIP11, zinc transporter 11 precursor -0.244 -0.225
98 264083_at AT2G31230 ATERF15, ethylene-responsive element binding factor 15, ERF15, ethylene-responsive element binding factor 15 -0.244 0.054
99 249242_at AT5G42250 [Zinc-binding alcohol dehydrogenase family protein] -0.241 0.179