4.0:Information of module
Mutant cry1 (High Light)
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010033 response to organic substance BP 3.265e-12
GO:0009725 response to hormone BP 4.184e-12
GO:0042221 response to chemical BP 3.348e-11
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009812 flavonoid metabolic process BP 6.860e-24
GO:0010224 response to UV-B BP 3.871e-23
GO:0009813 flavonoid biosynthetic process BP 1.362e-22
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Mutant cry1 (High Light)		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 0.596 0.535
2 262719_at AT1G43590 unknown 0.579 -0.308
3 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 0.578 -0.984
4 253689_at AT4G29770 unknown 0.455 -1.506
5 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 0.449 0.386
6 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 0.439 0.713
7 256418_at AT3G06160 [AP2/B3-like transcriptional factor family protein] 0.408 -0.936
8 259839_at AT1G52190 AtNPF1.2, NPF1.2, NRT1/ PTR family 1.2, NRT1.11, nitrate transporter 1.11 0.385 0.640
9 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 0.384 -0.851
10 265817_at AT2G18050 HIS1-3, histone H1-3 0.345 0.012
11 247643_at AT5G60450 ARF4, auxin response factor 4 0.333 0.485
12 250327_at AT5G12050 unknown 0.332 -1.241
13 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 0.326 0.078
14 259373_at AT1G69160 unknown 0.301 -0.640
15 259104_at AT3G02170 LNG2, LONGIFOLIA2, TRM1, TON1 Recruiting Motif 1 0.278 -0.399
16 248839_at AT5G46690 bHLH071, beta HLH protein 71 0.240 0.602
17 253493_at AT4G31820 ENP, ENHANCER OF PINOID, MAB4, MACCHI-BOU 4, NPY1, NAKED PINS IN YUC MUTANTS 1 0.239 0.188
18 259398_at AT1G17700 PRA1.F1, prenylated RAB acceptor 1.F1 0.238 -0.675
19 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 0.237 -1.119
20 246562_at AT5G15580 LNG1, LONGIFOLIA1, TRM2, TON1 Recruiting Motif 2 0.236 0.190
21 256980_at AT3G26932 DRB3, dsRNA-binding protein 3 0.227 0.500
22 247474_at AT5G62280 unknown 0.218 -0.158
23 267452_at AT2G33860 ARF3, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, ETT, ETTIN 0.210 0.886
24 246310_at AT3G51895 AST12, SULTR3;1, sulfate transporter 3;1 0.208 -0.967
25 261480_at AT1G14280 PKS2, phytochrome kinase substrate 2 0.208 -0.268
26 247754_at AT5G59080 unknown 0.198 -0.198
27 261502_at AT1G14440 AtHB31, homeobox protein 31, FTM2, FLORAL TRANSITION AT THE MERISTEM2, HB31, homeobox protein 31, ZHD4, ZINC FINGER HOMEODOMAIN 4 0.194 0.312
28 254609_at AT4G18970 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.193 0.310
29 250013_at AT5G18040 unknown 0.192 1.156
30 254065_at AT4G25420 AT2301, ATGA20OX1, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, GA20OX1, GA5, GA REQUIRING 5 0.187 -0.616
31 251575_at AT3G58120 ATBZIP61, BZIP61 0.182 -0.153
32 263002_at AT1G54200 unknown 0.180 -0.881
33 265249_at AT2G01940 ATIDD15, ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 15, SGR5, SHOOT GRAVITROPISM 5 0.176 -0.173
34 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 0.176 -0.175
35 252078_at AT3G51740 IMK2, inflorescence meristem receptor-like kinase 2 0.173 -0.756
36 265726_at AT2G32010 CVL1, CVP2 like 1 0.170 0.716
37 259689_x_at AT1G63130 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.168 -0.052
38 266899_at AT2G34620 [Mitochondrial transcription termination factor family protein] 0.167 -0.012
39 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 0.166 -0.534
40 260266_at AT1G68520 BBX14, B-box domain protein 14 0.166 -0.058
41 265053_at AT1G52000 [Mannose-binding lectin superfamily protein] 0.163 0.046
42 245242_at AT1G44446 ATCAO, ARABIDOPSIS THALIANA CHLOROPHYLL A OXYGENASE, CAO, CHLOROPHYLL A OXYGENASE, CH1, CHLORINA 1 0.159 0.304
43 248208_at AT5G53980 ATHB52, homeobox protein 52, HB52, homeobox protein 52 0.159 -0.260
44 246142_at AT5G19970 unknown 0.158 -0.009
45 262399_at AT1G49500 unknown 0.158 0.771
46 253812_at AT4G28240 [Wound-responsive family protein] 0.156 0.503
47 267158_at AT2G37640 ATEXP3, EXPANSIN 3, ATEXPA3, ARABIDOPSIS THALIANA EXPANSIN A3, ATHEXP ALPHA 1.9, EXP3 0.156 0.620
48 267580_at AT2G41990 unknown 0.154 -0.996
49 261780_at AT1G76310 CYCB2;4, CYCLIN B2;4 0.153 -1.206
50 258239_at AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 0.150 -0.183
51 255648_at AT4G00910 [Aluminium activated malate transporter family protein] 0.149 0.145
52 251301_at AT3G61880 CYP78A9, cytochrome p450 78a9 0.147 -0.926
53 248167_at AT5G54530 unknown 0.141 0.179
54 259182_at AT3G01750 [Ankyrin repeat family protein] 0.141 -0.379
55 267271_at AT2G02540 ATHB21, homeobox protein 21, HB21, homeobox protein 21, ZFHD4, ZINC FINGER HOMEODOMAIN 4, ZHD3, ZINC FINGER HOMEODOMAIN 3 0.140 0.180
56 255652_at AT4G00950 MEE47, maternal effect embryo arrest 47 0.140 -0.917
57 256454_at AT1G75280 [NmrA-like negative transcriptional regulator family protein] -1.434 0.292
58 256453_at AT1G75270 DHAR2, dehydroascorbate reductase 2 -1.190 0.330
59 255068_at AT4G08920 ATCRY1, BLU1, BLUE LIGHT UNINHIBITED 1, CRY1, cryptochrome 1, HY4, ELONGATED HYPOCOTYL 4, OOP2, OUT OF PHASE 2 -0.836 0.420
60 256452_at AT1G75240 AtHB33, homeobox protein 33, HB33, homeobox protein 33, ZHD5, zinc-finger homeodomain 5 -0.683 0.698
61 257595_at AT3G24750 unknown -0.539 -0.566
62 249843_at AT5G23570 ATSGS3, SUPPRESSOR OF GENE SILENCING 3, SGS3, SUPPRESSOR OF GENE SILENCING 3 -0.486 0.214
63 259925_at AT1G75040 PR-5, PR5, pathogenesis-related gene 5 -0.471 -0.897
64 256509_at AT1G75300 [NmrA-like negative transcriptional regulator family protein] -0.438 -0.220
65 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 -0.430 -0.630
66 250445_at AT5G10760 [Eukaryotic aspartyl protease family protein] -0.410 -0.997
67 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.322 -0.894
68 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] -0.304 0.153
69 256386_at AT1G66540 [Cytochrome P450 superfamily protein] -0.301 -0.018
70 246966_at AT5G24850 CRY3, cryptochrome 3 -0.297 0.566
71 250049_at AT5G17780 [alpha/beta-Hydrolases superfamily protein] -0.295 -0.262
72 265510_at AT2G05630 ATG8D -0.292 0.270
73 245560_at AT4G15480 UGT84A1 -0.278 -0.128
74 248347_at AT5G52250 EFO1, EARLY FLOWERING BY OVEREXPRESSION 1, RUP1, REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1 -0.277 0.784
75 245126_at AT2G47460 ATMYB12, MYB DOMAIN PROTEIN 12, MYB12, myb domain protein 12, PFG1, PRODUCTION OF FLAVONOL GLYCOSIDES 1 -0.264 -0.483
76 265634_at AT2G25530 [AFG1-like ATPase family protein] -0.260 0.667
77 264752_at AT1G23010 LPR1, Low Phosphate Root1 -0.254 0.528
78 262750_at AT1G28710 [Nucleotide-diphospho-sugar transferase family protein] -0.250 -0.550
79 267036_at AT2G38465 unknown -0.246 -0.320
80 249497_at AT5G39220 [alpha/beta-Hydrolases superfamily protein] -0.235 0.577
81 247463_at AT5G62210 [Embryo-specific protein 3, (ATS3)] -0.225 -0.682
82 267070_at AT2G41000 [Chaperone DnaJ-domain superfamily protein] -0.218 -0.327
83 247641_at AT5G60540 ATPDX2, PYRIDOXINE BIOSYNTHESIS 2, EMB2407, EMBRYO DEFECTIVE 2407, PDX2, pyridoxine biosynthesis 2 -0.216 0.620
84 258349_at AT3G17609 HYH, HY5-homolog -0.208 0.004
85 261443_at AT1G28480 GRX480, roxy19 -0.206 0.082
86 263918_at AT2G36590 ATPROT3, PROLINE TRANSPORTER 3, ProT3, proline transporter 3 -0.205 0.491
87 254327_at AT4G22490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.204 0.110
88 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 -0.202 0.045
89 254430_at AT4G20820 [FAD-binding Berberine family protein] -0.202 -0.589
90 264287_at AT1G61930 unknown -0.201 0.287
91 248049_at AT5G56090 COX15, cytochrome c oxidase 15 -0.201 0.473
92 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 -0.200 0.030
93 260035_at AT1G68850 [Peroxidase superfamily protein] -0.195 -0.954
94 256816_at AT3G21400 unknown -0.191 1.058
95 266383_at AT2G14580 ATPRB1, basic pathogenesis-related protein 1, PRB1, basic pathogenesis-related protein 1 -0.189 -0.674
96 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 -0.188 -0.335
97 252383_at AT3G47780 ABCA7, ATP-binding cassette A7, ATATH6, A. THALIANA ABC2 HOMOLOG 6, ATH6, ABC2 homolog 6 -0.176 0.813
98 267066_at AT2G41040 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.175 -0.277
99 259537_at AT1G12370 PHR1, photolyase 1, UVR2, UV RESISTANCE 2 -0.173 0.402
100 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 -0.171 0.378
101 247326_at AT5G64110 [Peroxidase superfamily protein] -0.171 0.888
102 251020_at AT5G02270 ABCI20, ATP-binding cassette I20, ATNAP9, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, NAP9, non-intrinsic ABC protein 9 -0.166 0.774
103 251062_at AT5G01840 ATOFP1, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, OFP1, ovate family protein 1 -0.166 -0.647
104 252010_at AT3G52740 unknown -0.163 0.368
105 255596_at AT4G01720 AtWRKY47, WRKY47 -0.163 0.492
106 252629_at AT3G44970 [Cytochrome P450 superfamily protein] -0.162 0.102
107 264637_at AT1G65560 [Zinc-binding dehydrogenase family protein] -0.162 0.773
108 261514_at AT1G71870 [MATE efflux family protein] -0.162 0.095
109 262748_at AT1G28610 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.162 0.295
110 260784_at AT1G06180 ATMYB13, myb domain protein 13, ATMYBLFGN, MYB13, myb domain protein 13 -0.161 -1.103
111 251422_at AT3G60540 [Preprotein translocase Sec, Sec61-beta subunit protein] -0.156 0.471