4.0:Information of module
WT zebularine
In comparison with Dark 6h hml help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044237 cellular metabolic process BP 4.617e-91
GO:0001510 RNA methylation BP 1.602e-89
GO:0071704 organic substance metabolic process BP 1.684e-85
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0007623 circadian rhythm BP 2.147e-17
GO:0048511 rhythmic process BP 2.147e-17
GO:0009414 response to water deprivation BP 9.367e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WT zebularine		 Log2 signal ratio
Dark 6h hml
1 AT1G20750 AT1G20750 [RAD3-like DNA-binding helicase protein] 4.267 -0.240
2 AT1G43800 AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN-DESATURASE6 3.728 -0.240
3 AT4G11050 AT4G11050 AtGH9C3, glycosyl hydrolase 9C3, GH9C3, glycosyl hydrolase 9C3 3.399 -0.240
4 AT3G27630 AT3G27630 SMR7, SIAMESE-RELATED 7 2.872 -0.045
5 AT2G38600 AT2G38600 [HAD superfamily, subfamily IIIB acid phosphatase ] 2.833 4.584
6 AT3G49340 AT3G49340 [Cysteine proteinases superfamily protein] 2.772 -2.899
7 AT2G14560 AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 2.609 -4.118
8 AT1G12940 AT1G12940 ATNRT2.5, nitrate transporter2.5, NRT2.5, nitrate transporter2.5 2.567 -2.714
9 AT2G18660 AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 2.487 -3.631
10 AT2G18193 AT2G18193 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 2.486 -0.711
11 AT3G01600 AT3G01600 anac044, NAC domain containing protein 44, NAC044, NAC domain containing protein 44 2.445 -1.186
12 AT5G15120 AT5G15120 unknown 2.185 -0.053
13 AT3G02550 AT3G02550 LBD41, LOB domain-containing protein 41 2.065 3.974
14 AT4G10270 AT4G10270 [Wound-responsive family protein] 1.948 -2.389
15 AT5G41750 AT5G41750 [Disease resistance protein (TIR-NBS-LRR class) family] 1.920 -1.489
16 AT1G66390 AT1G66390 ATMYB90, MYB90, myb domain protein 90, PAP2, PRODUCTION OF ANTHOCYANIN PIGMENT 2 1.898 -0.240
17 AT3G57260 AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 1.879 -5.473
18 AT5G60250 AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 1.853 -0.749
19 AT3G46090 AT3G46090 ZAT7 1.804 -4.220
20 AT3G22235 AT3G22235 unknown 1.791 -4.302
21 AT1G65310 AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 1.740 -1.168
22 AT3G58270 AT3G58270 [Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain] 1.729 0.978
23 AT4G22960 AT4G22960 unknown 1.686 -0.022
24 AT5G19100 AT5G19100 [Eukaryotic aspartyl protease family protein] 1.655 -0.240
25 AT1G43910 AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 1.624 -5.002
26 AT3G47480 AT3G47480 [Calcium-binding EF-hand family protein] 1.592 -3.136
27 AT5G59240 AT5G59240 [Ribosomal protein S8e family protein] 1.584 -1.594
28 AT1G24140 AT1G24140 [Matrixin family protein] 1.508 -1.913
29 AT3G16150 AT3G16150 ASPGB1, asparaginase B1 1.506 0.089
30 AT4G39250 AT4G39250 ATRL1, RAD-like 1, RL1, RAD-like 1, RSM2, RADIALIS-LIKE SANT/MYB 2 1.391 -0.240
31 AT5G45340 AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 1.381 -1.690
32 AT2G21650 AT2G21650 ATRL2, ARABIDOPSIS RAD-LIKE 2, MEE3, MATERNAL EFFECT EMBRYO ARREST 3, RSM1, RADIALIS-LIKE SANT/MYB 1 1.373 -1.967
33 AT3G09922 AT3G09922 ATIPS1, A. THALIANA INDUCED BY PHOSPHATE STARVATION1, IPS1, INDUCED BY PHOSPHATE STARVATION1 1.304 -0.240
34 AT3G22740 AT3G22740 HMT3, homocysteine S-methyltransferase 3 1.295 -0.963
35 AT4G21070 AT4G21070 ATBRCA1, ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, BRCA1, breast cancer susceptibility1 1.292 -0.827
36 AT5G52750 AT5G52750 [Heavy metal transport/detoxification superfamily protein ] 1.272 -1.438
37 AT2G32680 AT2G32680 AtRLP23, receptor like protein 23, RLP23, receptor like protein 23 1.213 -3.568
38 AT1G51380 AT1G51380 [DEA(D/H)-box RNA helicase family protein] 1.202 -0.203
39 AT2G39330 AT2G39330 JAL23, jacalin-related lectin 23 1.200 -4.268
40 AT2G18690 AT2G18690 unknown 1.197 -2.663
41 AT4G25630 AT4G25630 ATFIB2, FIB2, fibrillarin 2 1.197 -2.148
42 AT1G21910 AT1G21910 DREB26, dehydration response element-binding protein 26 1.185 0.198
43 AT1G70260 AT1G70260 UMAMIT36, Usually multiple acids move in and out Transporters 36 1.163 -2.725
44 AT3G44750 AT3G44750 ATHD2A, HD2A, HISTONE DEACETYLASE 2A, HDA3, histone deacetylase 3, HDT1 1.138 -1.653
45 AT5G10760 AT5G10760 [Eukaryotic aspartyl protease family protein] 1.123 -3.360
46 AT5G42800 AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 1.110 -2.281
47 AT1G21890 AT1G21890 UMAMIT19, Usually multiple acids move in and out Transporters 19 1.092 -0.240
48 AT3G59670 AT3G59670 unknown 1.072 -0.720
49 AT3G19680 AT3G19680 unknown 1.069 0.964
50 AT1G35140 AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 1.062 2.656
51 AT2G30670 AT2G30670 [NAD(P)-binding Rossmann-fold superfamily protein] 1.056 -0.240
52 AT3G07800 AT3G07800 AtTK1a, TK1a, thymidine kinase 1a 1.052 -0.556
53 AT4G19130 AT4G19130 [Replication factor-A protein 1-related] 1.049 -0.575
54 AT4G22880 AT4G22880 ANS, ANTHOCYANIDIN SYNTHASE, LDOX, leucoanthocyanidin dioxygenase, TDS4, TANNIN DEFICIENT SEED 4, TT18 1.045 -1.922
55 AT5G41080 AT5G41080 AtGDPD2, GDPD2, glycerophosphodiester phosphodiesterase 2 1.045 6.647
56 AT3G23370 AT3G23370 [RNA-binding (RRM/RBD/RNP motifs) family protein] 1.040 -1.539
57 AT2G17040 AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 1.021 -1.459
58 AT2G39510 AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 1.007 0.670
59 AT2G32220 AT2G32220 [Ribosomal L27e protein family] 1.000 -0.861
60 AT5G48720 AT5G48720 XRI, X-RAY INDUCED TRANSCRIPT, XRI1, X-RAY INDUCED TRANSCRIPT 1 0.997 -0.287
61 AT4G02330 AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.990 -1.385
62 AT5G20850 AT5G20850 ATRAD51, RAD51 0.986 0.155
63 AT5G23020 AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 0.980 -3.447
64 AT4G36580 AT4G36580 [AAA-type ATPase family protein] 0.946 -2.205
65 AT3G19710 AT3G19710 BCAT4, branched-chain aminotransferase4 0.946 -3.613
66 AT5G27120 AT5G27120 [NOP56-like pre RNA processing ribonucleoprotein] 0.933 -1.128
67 AT3G49320 AT3G49320 [Metal-dependent protein hydrolase] 0.932 -0.901
68 AT2G18328 AT2G18328 ATRL4, RAD-like 4, RL4, RAD-like 4 0.928 -1.017
69 AT3G30775 AT3G30775 AT-POX, ATPDH, ATPOX, ARABIDOPSIS THALIANA PROLINE OXIDASE, ERD5, EARLY RESPONSIVE TO DEHYDRATION 5, PDH1, proline dehydrogenase 1, PRO1, PRODH, PROLINE DEHYDROGENASE 0.926 5.024
70 AT1G76650 AT1G76650 CML38, calmodulin-like 38 0.925 2.322
71 AT4G28040 AT4G28040 UMAMIT33, Usually multiple acids move in and out Transporters 33 -2.332 8.495
72 AT2G26020 AT2G26020 PDF1.2b, plant defensin 1.2b -2.168 -1.034
73 AT3G14280 AT3G14280 unknown -2.091 -0.667
74 AT5G42900 AT5G42900 COR27, cold regulated gene 27 -2.045 1.054
75 AT4G33980 AT4G33980 unknown -2.008 6.841
76 AT4G33467 AT4G33467 unknown -1.991 9.411
77 AT2G33830 AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -1.876 7.378
78 AT1G64110 AT1G64110 DAA1, DUO1-activated ATPase 1 -1.830 3.389
79 AT2G18050 AT2G18050 HIS1-3, histone H1-3 -1.783 3.826
80 AT3G47340 AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 -1.673 7.116
81 AT2G38465 AT2G38465 unknown -1.625 6.578
82 AT2G42530 AT2G42530 COR15B, cold regulated 15b -1.583 4.810
83 AT4G25480 AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A -1.577 6.940
84 AT1G68050 AT1G68050 ADO3, FKF1, flavin-binding, kelch repeat, f box 1 -1.512 8.028
85 AT5G59320 AT5G59320 LTP3, lipid transfer protein 3 -1.498 3.962
86 AT3G52310 AT3G52310 ABCG27, ATP-binding cassette G27 -1.466 2.326
87 AT2G15020 AT2G15020 unknown -1.451 -5.604
88 AT4G34550 AT4G34550 unknown -1.394 -0.775
89 AT3G24420 AT3G24420 [alpha/beta-Hydrolases superfamily protein] -1.346 -0.574
90 AT1G20070 AT1G20070 unknown -1.269 1.306
91 AT2G39800 AT2G39800 ATP5CS, P5CS1, delta1-pyrroline-5-carboxylate synthase 1 -1.249 2.140
92 AT4G35770 AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 -1.243 7.979
93 AT5G66400 AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -1.230 3.091
94 AT4G08115 AT4G08115 [gypsy-like retrotransposon family, has a 7.2e-05 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -1.211 1.027
95 AT1G11210 AT1G11210 unknown -1.200 6.657
96 AT4G33550 AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -1.188 -3.065
97 AT5G54585 AT5G54585 unknown -1.172 0.473
98 AT1G36060 AT1G36060 [Integrase-type DNA-binding superfamily protein] -1.142 3.341
99 AT5G24470 AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 -1.097 8.504
100 AT3G51400 AT3G51400 unknown -1.076 4.978
101 AT3G28153 AT3G28153 [non-LTR retrotransposon family (LINE), has a 1.3e-30 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)] -1.067 0.682
102 AT2G21210 AT2G21210 SAUR6, SMALL AUXIN UPREGULATED RNA 6 -1.054 -3.506
103 AT1G31173 AT1G31173 MIR167D, microRNA167D -1.020 1.789
104 AT2G05540 AT2G05540 [Glycine-rich protein family] -1.018 3.332
105 AT5G39610 AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 -1.001 2.305
106 AT5G54190 AT5G54190 PORA, protochlorophyllide oxidoreductase A -0.999 3.665
107 AT3G28270 AT3G28270 unknown -0.977 -4.422
108 AT1G77380 AT1G77380 AAP3, amino acid permease 3, ATAAP3 -0.970 3.507
109 AT2G33380 AT2G33380 AtCLO3, Arabidopsis thaliana caleosin 3, CLO-3, caleosin 3, CLO3, caleosin 3, RD20, RESPONSIVE TO DESSICATION 20 -0.964 1.251
110 AT1G22500 AT1G22500 AtATL15, Arabidopsis thaliana Arabidopsis toxicos en levadura 15, ATL15, Arabidopsis toxicos en levadura 15 -0.959 0.688
111 AT1G02820 AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 -0.947 -1.037
112 AT3G18950 AT3G18950 [Transducin/WD40 repeat-like superfamily protein] -0.937 -2.592
113 AT3G09450 AT3G09450 unknown -0.916 -8.661
114 AT1G02850 AT1G02850 BGLU11, beta glucosidase 11 -0.907 1.400
115 AT1G76410 AT1G76410 ATL8 -0.897 4.560
116 AT5G40720 AT5G40720 unknown -0.887 0.510
117 AT5G56870 AT5G56870 BGAL4, beta-galactosidase 4 -0.882 4.832
118 AT1G52342 AT1G52342 unknown -0.878 0.296
119 AT2G22200 AT2G22200 [Integrase-type DNA-binding superfamily protein] -0.875 -0.668
120 AT1G48330 AT1G48330 unknown -0.854 0.937
121 AT2G30420 AT2G30420 ETC2, ENHANCER OF TRY AND CPC 2 -0.840 0.605
122 AT2G42540 AT2G42540 COR15, COR15A, cold-regulated 15a -0.835 4.491
123 AT5G26200 AT5G26200 [Mitochondrial substrate carrier family protein] -0.832 -1.444
124 AT4G36850 AT4G36850 [PQ-loop repeat family protein / transmembrane family protein] -0.817 2.469
125 AT1G80570 AT1G80570 [RNI-like superfamily protein] -0.813 2.794
126 AT1G73480 AT1G73480 [alpha/beta-Hydrolases superfamily protein] -0.804 2.349
127 AT3G20395 AT3G20395 [RING/U-box superfamily protein] -0.798 -1.475
128 AT1G48100 AT1G48100 [Pectin lyase-like superfamily protein] -0.796 -1.187
129 AT3G19030 AT3G19030 unknown -0.792 -1.912
130 AT3G26165 AT3G26165 CYP71B18, cytochrome P450, family 71, subfamily B, polypeptide 18 -0.791 1.026
131 AT4G16146 AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] -0.775 4.389
132 AT3G62550 AT3G62550 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.773 6.846
133 AT4G32340 AT4G32340 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.770 3.697
134 AT4G26530 AT4G26530 AtFBA5, FBA5, fructose-bisphosphate aldolase 5 -0.766 1.963
135 AT1G70420 AT1G70420 unknown -0.762 3.293
136 AT1G72830 AT1G72830 ATHAP2C, HAP2C, NF-YA3, nuclear factor Y, subunit A3 -0.758 0.862
137 AT1G08650 AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 -0.754 -1.789
138 AT3G06500 AT3G06500 A/N-InvC, alkaline/neutral invertase C -0.749 2.827
139 AT1G62510 AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.748 4.562
140 AT4G19170 AT4G19170 CCD4, carotenoid cleavage dioxygenase 4, NCED4, nine-cis-epoxycarotenoid dioxygenase 4 -0.745 1.390