4.0:Information of module
WT zebularine
In comparison with Dark 6h wt help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044237 cellular metabolic process BP 4.617e-91
GO:0001510 RNA methylation BP 1.602e-89
GO:0071704 organic substance metabolic process BP 1.684e-85
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0007623 circadian rhythm BP 2.147e-17
GO:0048511 rhythmic process BP 2.147e-17
GO:0009414 response to water deprivation BP 9.367e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WT zebularine		 Log2 signal ratio
Dark 6h wt
1 AT1G20750 AT1G20750 [RAD3-like DNA-binding helicase protein] 4.267 -0.047
2 AT1G43800 AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN-DESATURASE6 3.728 -0.579
3 AT4G11050 AT4G11050 AtGH9C3, glycosyl hydrolase 9C3, GH9C3, glycosyl hydrolase 9C3 3.399 -0.578
4 AT3G27630 AT3G27630 SMR7, SIAMESE-RELATED 7 2.872 -0.049
5 AT2G38600 AT2G38600 [HAD superfamily, subfamily IIIB acid phosphatase ] 2.833 3.006
6 AT3G49340 AT3G49340 [Cysteine proteinases superfamily protein] 2.772 0.565
7 AT2G14560 AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 2.609 -6.904
8 AT1G12940 AT1G12940 ATNRT2.5, nitrate transporter2.5, NRT2.5, nitrate transporter2.5 2.567 -1.512
9 AT2G18660 AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 2.487 -3.512
10 AT2G18193 AT2G18193 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 2.486 -0.589
11 AT3G01600 AT3G01600 anac044, NAC domain containing protein 44, NAC044, NAC domain containing protein 44 2.445 -0.578
12 AT5G15120 AT5G15120 unknown 2.185 -0.663
13 AT3G02550 AT3G02550 LBD41, LOB domain-containing protein 41 2.065 3.536
14 AT4G10270 AT4G10270 [Wound-responsive family protein] 1.948 -1.123
15 AT5G41750 AT5G41750 [Disease resistance protein (TIR-NBS-LRR class) family] 1.920 -1.163
16 AT1G66390 AT1G66390 ATMYB90, MYB90, myb domain protein 90, PAP2, PRODUCTION OF ANTHOCYANIN PIGMENT 2 1.898 -0.047
17 AT3G57260 AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 1.879 -4.648
18 AT5G60250 AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 1.853 -0.610
19 AT3G46090 AT3G46090 ZAT7 1.804 -4.198
20 AT3G22235 AT3G22235 unknown 1.791 -5.646
21 AT1G65310 AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 1.740 -0.965
22 AT3G58270 AT3G58270 [Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain] 1.729 1.466
23 AT4G22960 AT4G22960 unknown 1.686 1.269
24 AT5G19100 AT5G19100 [Eukaryotic aspartyl protease family protein] 1.655 -0.047
25 AT1G43910 AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 1.624 -3.816
26 AT3G47480 AT3G47480 [Calcium-binding EF-hand family protein] 1.592 -3.438
27 AT5G59240 AT5G59240 [Ribosomal protein S8e family protein] 1.584 -1.443
28 AT1G24140 AT1G24140 [Matrixin family protein] 1.508 -1.489
29 AT3G16150 AT3G16150 ASPGB1, asparaginase B1 1.506 0.419
30 AT4G39250 AT4G39250 ATRL1, RAD-like 1, RL1, RAD-like 1, RSM2, RADIALIS-LIKE SANT/MYB 2 1.391 -0.047
31 AT5G45340 AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 1.381 -1.882
32 AT2G21650 AT2G21650 ATRL2, ARABIDOPSIS RAD-LIKE 2, MEE3, MATERNAL EFFECT EMBRYO ARREST 3, RSM1, RADIALIS-LIKE SANT/MYB 1 1.373 -1.781
33 AT3G09922 AT3G09922 ATIPS1, A. THALIANA INDUCED BY PHOSPHATE STARVATION1, IPS1, INDUCED BY PHOSPHATE STARVATION1 1.304 -0.047
34 AT3G22740 AT3G22740 HMT3, homocysteine S-methyltransferase 3 1.295 -0.585
35 AT4G21070 AT4G21070 ATBRCA1, ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, BRCA1, breast cancer susceptibility1 1.292 -1.082
36 AT5G52750 AT5G52750 [Heavy metal transport/detoxification superfamily protein ] 1.272 -1.388
37 AT2G32680 AT2G32680 AtRLP23, receptor like protein 23, RLP23, receptor like protein 23 1.213 -3.237
38 AT1G51380 AT1G51380 [DEA(D/H)-box RNA helicase family protein] 1.202 -0.224
39 AT2G39330 AT2G39330 JAL23, jacalin-related lectin 23 1.200 -0.631
40 AT2G18690 AT2G18690 unknown 1.197 -2.413
41 AT4G25630 AT4G25630 ATFIB2, FIB2, fibrillarin 2 1.197 -2.034
42 AT1G21910 AT1G21910 DREB26, dehydration response element-binding protein 26 1.185 -0.080
43 AT1G70260 AT1G70260 UMAMIT36, Usually multiple acids move in and out Transporters 36 1.163 -2.297
44 AT3G44750 AT3G44750 ATHD2A, HD2A, HISTONE DEACETYLASE 2A, HDA3, histone deacetylase 3, HDT1 1.138 -1.669
45 AT5G10760 AT5G10760 [Eukaryotic aspartyl protease family protein] 1.123 -2.849
46 AT5G42800 AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 1.110 -2.069
47 AT1G21890 AT1G21890 UMAMIT19, Usually multiple acids move in and out Transporters 19 1.092 -0.047
48 AT3G59670 AT3G59670 unknown 1.072 -0.815
49 AT3G19680 AT3G19680 unknown 1.069 0.567
50 AT1G35140 AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 1.062 2.022
51 AT2G30670 AT2G30670 [NAD(P)-binding Rossmann-fold superfamily protein] 1.056 -0.047
52 AT3G07800 AT3G07800 AtTK1a, TK1a, thymidine kinase 1a 1.052 -0.588
53 AT4G19130 AT4G19130 [Replication factor-A protein 1-related] 1.049 -0.155
54 AT4G22880 AT4G22880 ANS, ANTHOCYANIDIN SYNTHASE, LDOX, leucoanthocyanidin dioxygenase, TDS4, TANNIN DEFICIENT SEED 4, TT18 1.045 -1.720
55 AT5G41080 AT5G41080 AtGDPD2, GDPD2, glycerophosphodiester phosphodiesterase 2 1.045 5.355
56 AT3G23370 AT3G23370 [RNA-binding (RRM/RBD/RNP motifs) family protein] 1.040 -1.154
57 AT2G17040 AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 1.021 -0.858
58 AT2G39510 AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 1.007 -0.047
59 AT2G32220 AT2G32220 [Ribosomal L27e protein family] 1.000 -0.876
60 AT5G48720 AT5G48720 XRI, X-RAY INDUCED TRANSCRIPT, XRI1, X-RAY INDUCED TRANSCRIPT 1 0.997 -0.292
61 AT4G02330 AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.990 -0.927
62 AT5G20850 AT5G20850 ATRAD51, RAD51 0.986 0.107
63 AT5G23020 AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 0.980 -3.775
64 AT4G36580 AT4G36580 [AAA-type ATPase family protein] 0.946 -2.670
65 AT3G19710 AT3G19710 BCAT4, branched-chain aminotransferase4 0.946 -4.855
66 AT5G27120 AT5G27120 [NOP56-like pre RNA processing ribonucleoprotein] 0.933 -1.645
67 AT3G49320 AT3G49320 [Metal-dependent protein hydrolase] 0.932 -1.574
68 AT2G18328 AT2G18328 ATRL4, RAD-like 4, RL4, RAD-like 4 0.928 -1.094
69 AT3G30775 AT3G30775 AT-POX, ATPDH, ATPOX, ARABIDOPSIS THALIANA PROLINE OXIDASE, ERD5, EARLY RESPONSIVE TO DEHYDRATION 5, PDH1, proline dehydrogenase 1, PRO1, PRODH, PROLINE DEHYDROGENASE 0.926 4.915
70 AT1G76650 AT1G76650 CML38, calmodulin-like 38 0.925 2.460
71 AT4G28040 AT4G28040 UMAMIT33, Usually multiple acids move in and out Transporters 33 -2.332 7.736
72 AT2G26020 AT2G26020 PDF1.2b, plant defensin 1.2b -2.168 1.236
73 AT3G14280 AT3G14280 unknown -2.091 -0.502
74 AT5G42900 AT5G42900 COR27, cold regulated gene 27 -2.045 -0.031
75 AT4G33980 AT4G33980 unknown -2.008 6.531
76 AT4G33467 AT4G33467 unknown -1.991 8.685
77 AT2G33830 AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -1.876 7.840
78 AT1G64110 AT1G64110 DAA1, DUO1-activated ATPase 1 -1.830 4.173
79 AT2G18050 AT2G18050 HIS1-3, histone H1-3 -1.783 3.506
80 AT3G47340 AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 -1.673 6.842
81 AT2G38465 AT2G38465 unknown -1.625 7.345
82 AT2G42530 AT2G42530 COR15B, cold regulated 15b -1.583 4.699
83 AT4G25480 AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A -1.577 7.494
84 AT1G68050 AT1G68050 ADO3, FKF1, flavin-binding, kelch repeat, f box 1 -1.512 7.855
85 AT5G59320 AT5G59320 LTP3, lipid transfer protein 3 -1.498 3.339
86 AT3G52310 AT3G52310 ABCG27, ATP-binding cassette G27 -1.466 2.478
87 AT2G15020 AT2G15020 unknown -1.451 -6.260
88 AT4G34550 AT4G34550 unknown -1.394 -0.047
89 AT3G24420 AT3G24420 [alpha/beta-Hydrolases superfamily protein] -1.346 -0.755
90 AT1G20070 AT1G20070 unknown -1.269 -0.382
91 AT2G39800 AT2G39800 ATP5CS, P5CS1, delta1-pyrroline-5-carboxylate synthase 1 -1.249 1.764
92 AT4G35770 AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 -1.243 8.010
93 AT5G66400 AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -1.230 2.835
94 AT4G08115 AT4G08115 [gypsy-like retrotransposon family, has a 7.2e-05 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -1.211 0.844
95 AT1G11210 AT1G11210 unknown -1.200 6.362
96 AT4G33550 AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -1.188 -1.389
97 AT5G54585 AT5G54585 unknown -1.172 0.405
98 AT1G36060 AT1G36060 [Integrase-type DNA-binding superfamily protein] -1.142 3.206
99 AT5G24470 AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 -1.097 9.240
100 AT3G51400 AT3G51400 unknown -1.076 5.000
101 AT3G28153 AT3G28153 [non-LTR retrotransposon family (LINE), has a 1.3e-30 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)] -1.067 -0.189
102 AT2G21210 AT2G21210 SAUR6, SMALL AUXIN UPREGULATED RNA 6 -1.054 -3.505
103 AT1G31173 AT1G31173 MIR167D, microRNA167D -1.020 1.101
104 AT2G05540 AT2G05540 [Glycine-rich protein family] -1.018 2.802
105 AT5G39610 AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 -1.001 1.972
106 AT5G54190 AT5G54190 PORA, protochlorophyllide oxidoreductase A -0.999 3.487
107 AT3G28270 AT3G28270 unknown -0.977 -4.823
108 AT1G77380 AT1G77380 AAP3, amino acid permease 3, ATAAP3 -0.970 2.678
109 AT2G33380 AT2G33380 AtCLO3, Arabidopsis thaliana caleosin 3, CLO-3, caleosin 3, CLO3, caleosin 3, RD20, RESPONSIVE TO DESSICATION 20 -0.964 1.225
110 AT1G22500 AT1G22500 AtATL15, Arabidopsis thaliana Arabidopsis toxicos en levadura 15, ATL15, Arabidopsis toxicos en levadura 15 -0.959 0.505
111 AT1G02820 AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 -0.947 -0.835
112 AT3G18950 AT3G18950 [Transducin/WD40 repeat-like superfamily protein] -0.937 -2.846
113 AT3G09450 AT3G09450 unknown -0.916 -8.843
114 AT1G02850 AT1G02850 BGLU11, beta glucosidase 11 -0.907 1.909
115 AT1G76410 AT1G76410 ATL8 -0.897 4.136
116 AT5G40720 AT5G40720 unknown -0.887 1.041
117 AT5G56870 AT5G56870 BGAL4, beta-galactosidase 4 -0.882 4.870
118 AT1G52342 AT1G52342 unknown -0.878 -0.160
119 AT2G22200 AT2G22200 [Integrase-type DNA-binding superfamily protein] -0.875 -0.692
120 AT1G48330 AT1G48330 unknown -0.854 0.831
121 AT2G30420 AT2G30420 ETC2, ENHANCER OF TRY AND CPC 2 -0.840 0.553
122 AT2G42540 AT2G42540 COR15, COR15A, cold-regulated 15a -0.835 4.252
123 AT5G26200 AT5G26200 [Mitochondrial substrate carrier family protein] -0.832 -1.365
124 AT4G36850 AT4G36850 [PQ-loop repeat family protein / transmembrane family protein] -0.817 2.474
125 AT1G80570 AT1G80570 [RNI-like superfamily protein] -0.813 2.982
126 AT1G73480 AT1G73480 [alpha/beta-Hydrolases superfamily protein] -0.804 2.696
127 AT3G20395 AT3G20395 [RING/U-box superfamily protein] -0.798 -0.396
128 AT1G48100 AT1G48100 [Pectin lyase-like superfamily protein] -0.796 -0.978
129 AT3G19030 AT3G19030 unknown -0.792 -2.365
130 AT3G26165 AT3G26165 CYP71B18, cytochrome P450, family 71, subfamily B, polypeptide 18 -0.791 1.105
131 AT4G16146 AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] -0.775 4.905
132 AT3G62550 AT3G62550 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.773 6.672
133 AT4G32340 AT4G32340 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.770 3.319
134 AT4G26530 AT4G26530 AtFBA5, FBA5, fructose-bisphosphate aldolase 5 -0.766 1.754
135 AT1G70420 AT1G70420 unknown -0.762 3.077
136 AT1G72830 AT1G72830 ATHAP2C, HAP2C, NF-YA3, nuclear factor Y, subunit A3 -0.758 0.658
137 AT1G08650 AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 -0.754 -1.795
138 AT3G06500 AT3G06500 A/N-InvC, alkaline/neutral invertase C -0.749 2.636
139 AT1G62510 AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.748 4.491
140 AT4G19170 AT4G19170 CCD4, carotenoid cleavage dioxygenase 4, NCED4, nine-cis-epoxycarotenoid dioxygenase 4 -0.745 1.085