4.0:Information of module
atr mitomycin C
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 1.079e-110
GO:1901700 response to oxygen-containing compound BP 6.245e-108
GO:0010033 response to organic substance BP 5.226e-104
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 1.265e-26
GO:0009719 response to endogenous stimulus BP 8.489e-25
GO:1901700 response to oxygen-containing compound BP 1.569e-23
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
atr mitomycin C		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 AT4G31950 AT4G31950 CYP82C3, cytochrome P450, family 82, subfamily C, polypeptide 3 6.133 -0.103
2 AT2G20880 AT2G20880 AtERF53, ERF53, ERF domain 53 5.934 0.055
3 AT3G12910 AT3G12910 [NAC (No Apical Meristem) domain transcriptional regulator superfamily protein] 5.469 -0.071
4 AT1G66270 AT1G66270 BGLU21 5.014 no data
5 AT1G60190 AT1G60190 AtPUB19, PUB19, plant U-box 19 4.910 0.192
6 AT3G28550 AT3G28550 [Proline-rich extensin-like family protein] 4.844 no data
7 AT4G33467 AT4G33467 unknown 4.827 no data
8 AT4G28140 AT4G28140 [Integrase-type DNA-binding superfamily protein] 4.659 0.000
9 AT5G03210 AT5G03210 AtDIP2, DIP2, DBP-interacting protein 2 4.283 0.035
10 AT2G39030 AT2G39030 NATA1, N-acetyltransferase activity 1 4.091 -0.004
11 AT4G18540 AT4G18540 unknown 4.003 -0.111
12 AT5G67310 AT5G67310 CYP81G1, cytochrome P450, family 81, subfamily G, polypeptide 1 3.955 0.026
13 AT1G30370 AT1G30370 DLAH, DAD1-like acylhydrolase 3.771 0.134
14 AT1G22810 AT1G22810 [Integrase-type DNA-binding superfamily protein] 3.714 0.039
15 AT5G65080 AT5G65080 AGL68, AGAMOUS-like 68, MAF5, MADS AFFECTING FLOWERING 5 3.615 0.007
16 AT1G60960 AT1G60960 ATIRT3, IRON REGULATED TRANSPORTER 3, IRT3, iron regulated transporter 3 3.552 -0.009
17 AT1G43000 AT1G43000 [PLATZ transcription factor family protein] 3.507 -0.063
18 AT3G14440 AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 3.457 0.197
19 AT1G29970 AT1G29970 RPL18AA, 60S ribosomal protein L18A-1 3.426 -0.079
20 AT1G52890 AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 3.410 0.145
21 AT1G79680 AT1G79680 ATWAKL10, WAKL10, WALL ASSOCIATED KINASE (WAK)-LIKE 10 3.262 0.127
22 AT4G32630 AT4G32630 [ArfGap/RecO-like zinc finger domain-containing protein] 3.207 -0.051
23 AT3G56790 AT3G56790 [RNA splicing factor-related] 3.175 no data
24 AT4G22710 AT4G22710 CYP706A2, cytochrome P450, family 706, subfamily A, polypeptide 2 3.166 no data
25 AT5G28610 AT5G28610 unknown 3.107 -0.044
26 AT2G44840 AT2G44840 ATERF13, ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13, EREBP, ERF13, ethylene-responsive element binding factor 13 3.080 0.253
27 AT1G64380 AT1G64380 [Integrase-type DNA-binding superfamily protein] 3.071 -0.089
28 AT3G02840 AT3G02840 [ARM repeat superfamily protein] 3.042 -0.045
29 AT1G71520 AT1G71520 [Integrase-type DNA-binding superfamily protein] 3.041 no data
30 AT3G63060 AT3G63060 EDL3, EID1-like 3 3.019 0.034
31 AT3G23230 AT3G23230 AtERF98, AtTDR1, ERF98, Ethylene Response Factor 98, TDR1, Transcriptional Regulator of Defense Response 1 3.009 -0.190
32 AT5G64905 AT5G64905 PROPEP3, elicitor peptide 3 precursor 2.985 -0.027
33 AT4G30280 AT4G30280 ATXTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18, XTH18, xyloglucan endotransglucosylase/hydrolase 18 2.970 0.126
34 AT5G52300 AT5G52300 LTI65, LOW-TEMPERATURE-INDUCED 65, RD29B, RESPONSIVE TO DESSICATION 29B 2.918 0.690
35 AT3G27250 AT3G27250 unknown 2.815 no data
36 AT3G29000 AT3G29000 [Calcium-binding EF-hand family protein] 2.814 no data
37 AT4G25470 AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 2.779 -0.065
38 AT1G14540 AT1G14540 PER4, peroxidase 4 2.743 0.422
39 AT3G55970 AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 2.711 -0.097
40 AT1G05675 AT1G05675 [UDP-Glycosyltransferase superfamily protein] 2.696 no data
41 AT4G37290 AT4G37290 unknown 2.652 0.070
42 AT5G42380 AT5G42380 CML37, calmodulin like 37 2.623 0.003
43 AT1G07160 AT1G07160 [Protein phosphatase 2C family protein] 2.615 -0.015
44 AT1G69260 AT1G69260 AFP1, ABI five binding protein 2.604 -0.125
45 AT1G72520 AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 2.565 0.127
46 AT1G07430 AT1G07430 AIP1, AKT1 interacting protein phosphatase 1, AtAIP1, HAI2, highly ABA-induced PP2C gene 2, HON, HONSU (Korean for abnormal drowsiness) 2.563 -0.032
47 AT4G29610 AT4G29610 [Cytidine/deoxycytidylate deaminase family protein] 2.550 -0.094
48 AT5G59220 AT5G59220 HAI1, highly ABA-induced PP2C gene 1, SAG113, senescence associated gene 113 2.543 0.018
49 AT5G59580 AT5G59580 UGT76E1, UDP-glucosyl transferase 76E1 2.523 -0.163
50 AT1G56240 AT1G56240 AtPP2-B13, phloem protein 2-B13, PP2-B13, phloem protein 2-B13 2.522 no data
51 AT1G61340 AT1G61340 AtFBS1, FBS1, F-box stress induced 1 2.517 0.086
52 AT5G65600 AT5G65600 LecRK-IX.2, L-type lectin receptor kinase IX.2 2.513 -0.073
53 AT1G20070 AT1G20070 unknown 2.455 -0.052
54 AT4G15975 AT4G15975 [RING/U-box superfamily protein] 2.449 no data
55 AT5G24110 AT5G24110 ATWRKY30, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY30, WRKY DNA-binding protein 30 2.426 -0.119
56 AT2G37430 AT2G37430 ZAT11, zinc finger of Arabidopsis thaliana 11 2.412 0.067
57 AT3G24420 AT3G24420 [alpha/beta-Hydrolases superfamily protein] 2.407 no data
58 AT1G21326 AT1G21326 [VQ motif-containing protein] 2.373 no data
59 AT3G55840 AT3G55840 [Hs1pro-1 protein] 2.365 0.017
60 AT1G56250 AT1G56250 AtPP2-B14, phloem protein 2-B14, PP2-B14, phloem protein 2-B14, VBF, VIP1-binding F-box protein 2.277 no data
61 AT5G65070 AT5G65070 AGL69, AGAMOUS-like 69, FCL4, MAF4, MADS AFFECTING FLOWERING 4 2.274 0.040
62 AT1G21120 AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 2.203 -0.103
63 AT1G49450 AT1G49450 [Transducin/WD40 repeat-like superfamily protein] 2.154 -0.096
64 AT1G56600 AT1G56600 AtGolS2, galactinol synthase 2, GolS2, galactinol synthase 2 2.132 -0.088
65 AT4G35720 AT4G35720 unknown 2.098 0.093
66 AT3G25780 AT3G25780 AOC3, allene oxide cyclase 3 2.084 0.103
67 AT4G39580 AT4G39580 [Galactose oxidase/kelch repeat superfamily protein] 2.054 no data
68 AT2G24600 AT2G24600 [Ankyrin repeat family protein] 2.050 0.043
69 AT4G21390 AT4G21390 B120 2.015 0.026
70 AT5G66650 AT5G66650 unknown 1.964 -0.073
71 AT1G17147 AT1G17147 [VQ motif-containing protein] 1.930 no data
72 AT1G21110 AT1G21110 IGMT3, indole glucosinolate O-methyltransferase 3 1.927 no data
73 AT2G33380 AT2G33380 AtCLO3, Arabidopsis thaliana caleosin 3, CLO-3, caleosin 3, CLO3, caleosin 3, RD20, RESPONSIVE TO DESSICATION 20 1.902 0.071
74 AT1G63820 AT1G63820 [CCT motif family protein] 1.901 -0.281
75 AT3G22910 AT3G22910 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] 1.881 0.038
76 AT4G05100 AT4G05100 AtMYB74, myb domain protein 74, MYB74, myb domain protein 74 1.879 0.096
77 AT1G05575 AT1G05575 unknown 1.862 -0.034
78 AT3G45960 AT3G45960 ATEXLA3, expansin-like A3, ATEXPL3, ATHEXP BETA 2.3, EXLA3, expansin-like A3, EXPL3 1.846 -0.048
79 AT1G78410 AT1G78410 [VQ motif-containing protein] 1.832 -0.152
80 AT1G78070 AT1G78070 [Transducin/WD40 repeat-like superfamily protein] 1.817 0.018
81 AT1G17380 AT1G17380 JAZ5, jasmonate-zim-domain protein 5, TIFY11A 1.810 0.266
82 AT3G47340 AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 1.778 -0.011
83 AT1G66090 AT1G66090 [Disease resistance protein (TIR-NBS class)] 1.775 0.002
84 AT2G40140 AT2G40140 ATSZF2, CZF1, SZF2, (SALT-INDUCIBLE ZINC FINGER 2, ZFAR1 1.773 0.141
85 AT3G29575 AT3G29575 AFP3, ABI five binding protein 3 1.751 0.200
86 AT2G32200 AT2G32200 unknown 1.661 no data
87 AT1G50750 AT1G50750 [Plant mobile domain protein family] 1.660 -0.223
88 AT2G14560 AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA -6.698 -0.001
89 AT2G14610 AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 -6.353 -0.073
90 AT1G14880 AT1G14880 AtPCR1, PCR1, PLANT CADMIUM RESISTANCE 1 -5.618 no data
91 AT3G49340 AT3G49340 [Cysteine proteinases superfamily protein] -5.326 -0.033
92 AT3G22231 AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 -5.227 0.069
93 AT4G08093 AT4G08093 [expressed protein, blastp match of 44% identity and 9.5e-07 P-value to GP|14091850|gb|AAK53853.1|AC016781_7|AC016781 Hypothetical protein {Oryza sativa}] -4.417 no data
94 AT2G11810 AT2G11810 ATMGD3, MGD3, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MGDC, monogalactosyldiacylglycerol synthase type C -4.415 0.092
95 AT1G53480 AT1G53480 ATMRD1, ARABIDOPSIS MTO 1 RESPONDING DOWN 1, MRD1, MTO 1 RESPONDING DOWN 1 -4.060 no data
96 AT2G18660 AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A -3.944 -0.016
97 AT3G22235 AT3G22235 unknown -3.840 no data
98 AT1G21240 AT1G21240 WAK3, wall associated kinase 3 -3.821 -0.001
99 AT5G52390 AT5G52390 [PAR1 protein] -3.615 0.041
100 AT1G66960 AT1G66960 LUP5 -3.509 -0.247
101 AT1G21910 AT1G21910 DREB26, dehydration response element-binding protein 26 -3.361 0.030
102 AT1G09080 AT1G09080 BIP3, binding protein 3 -3.276 -0.055
103 AT3G57260 AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 -3.268 -0.234
104 AT2G20670 AT2G20670 unknown -3.252 0.083
105 AT4G04500 AT4G04500 CRK37, cysteine-rich RLK (RECEPTOR-like protein kinase) 37 -3.235 0.031
106 AT5G38250 AT5G38250 [Protein kinase family protein] -3.229 no data
107 AT1G12940 AT1G12940 ATNRT2.5, nitrate transporter2.5, NRT2.5, nitrate transporter2.5 -3.227 -0.015
108 AT2G04070 AT2G04070 [MATE efflux family protein] -3.211 -0.076
109 AT4G35180 AT4G35180 LHT7, LYS/HIS transporter 7 -3.199 -0.170
110 AT3G47480 AT3G47480 [Calcium-binding EF-hand family protein] -3.112 0.075
111 AT4G23310 AT4G23310 CRK23, cysteine-rich RLK (RECEPTOR-like protein kinase) 23 -3.058 0.165
112 AT5G25260 AT5G25260 [SPFH/Band 7/PHB domain-containing membrane-associated protein family] -3.015 no data
113 AT3G20360 AT3G20360 [TRAF-like family protein] -2.999 no data
114 AT3G09450 AT3G09450 unknown -2.952 no data
115 AT3G15536 AT3G15536 -2.907 no data
116 AT1G23110 AT1G23110 unknown -2.884 no data
117 AT5G13320 AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 -2.874 -0.178
118 AT3G11340 AT3G11340 UGT76B1, UDP-dependent glycosyltransferase 76B1 -2.769 0.032
119 AT4G36430 AT4G36430 [Peroxidase superfamily protein] -2.762 0.067
120 AT1G67626 AT1G67626 [pseudogene] -2.733 no data
121 AT1G80440 AT1G80440 KFB20, Kelch repeat F-box 20, KMD1, KISS ME DEADLY 1 -2.726 0.040
122 AT1G26200 AT1G26200 [TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein] -2.718 no data
123 AT1G44130 AT1G44130 [Eukaryotic aspartyl protease family protein] -2.705 -0.134
124 AT4G08950 AT4G08950 EXO, EXORDIUM -2.686 -0.063
125 AT2G02680 AT2G02680 [Cysteine/Histidine-rich C1 domain family protein] -2.681 0.017
126 AT5G10760 AT5G10760 [Eukaryotic aspartyl protease family protein] -2.663 -0.097
127 AT3G19680 AT3G19680 unknown -2.627 -0.024
128 AT1G52342 AT1G52342 unknown -2.616 no data
129 AT5G43890 AT5G43890 SUPER1, SUPPRESSOR OF ER 1, YUC5, YUCCA5 -2.589 0.185
130 AT4G23150 AT4G23150 CRK7, cysteine-rich RLK (RECEPTOR-like protein kinase) 7 -2.589 0.246
131 AT5G40820 AT5G40820 ATATR, ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, ATR, Ataxia telangiectasia-mutated and RAD3-related, ATRAD3 -2.578 0.058
132 AT1G21890 AT1G21890 UMAMIT19, Usually multiple acids move in and out Transporters 19 -2.575 0.085
133 AT5G61590 AT5G61590 [Integrase-type DNA-binding superfamily protein] -2.568 -0.137
134 AT1G73830 AT1G73830 BEE3, BR enhanced expression 3 -2.554 -0.493
135 AT5G19190 AT5G19190 unknown -2.551 no data
136 AT1G79770 AT1G79770 unknown -2.520 0.011
137 AT1G25560 AT1G25560 AtTEM1, EDF1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, TEM1, TEMPRANILLO 1 -2.454 -0.124
138 AT1G13260 AT1G13260 EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, related to ABI3/VP1 1 -2.438 0.235
139 AT5G59680 AT5G59680 [Leucine-rich repeat protein kinase family protein] -2.437 -0.055
140 AT5G20410 AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 -2.434 0.071
141 AT1G33960 AT1G33960 AIG1, AVRRPT2-INDUCED GENE 1 -2.410 -0.095
142 AT5G54610 AT5G54610 ANK, ankyrin, BDA1, bian da 2 (becoming big in Chinese) -2.370 -0.083
143 AT1G17710 AT1G17710 AtPEPC1, Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, PEPC1, phosphoethanolamine/phosphocholine phosphatase 1 -2.362 -0.058
144 AT2G30230 AT2G30230 unknown -2.361 no data
145 AT1G06160 AT1G06160 ORA59, octadecanoid-responsive Arabidopsis AP2/ERF 59 -2.350 0.025
146 AT5G48850 AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 -2.332 0.037
147 AT1G73010 AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 -2.310 -0.026
148 AT5G62280 AT5G62280 unknown -2.304 0.102
149 AT1G30935 AT1G30935 [pseudogene] -2.302 no data
150 AT5G04190 AT5G04190 PKS4, phytochrome kinase substrate 4 -2.264 0.096
151 AT2G44380 AT2G44380 [Cysteine/Histidine-rich C1 domain family protein] -2.257 0.104
152 AT1G23390 AT1G23390 [Kelch repeat-containing F-box family protein] -2.216 0.108
153 AT4G34770 AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 -2.215 0.302
154 AT2G19190 AT2G19190 FRK1, FLG22-induced receptor-like kinase 1 -2.213 -0.133
155 AT3G18250 AT3G18250 [Putative membrane lipoprotein] -2.213 0.051
156 AT5G05440 AT5G05440 PYL5, PYRABACTIN RESISTANCE 1-LIKE 5, RCAR8, regulatory component of ABA receptor 8 -2.190 0.022
157 AT2G15020 AT2G15020 unknown -2.187 0.066
158 AT1G10340 AT1G10340 [Ankyrin repeat family protein] -2.173 0.053
159 AT5G24200 AT5G24200 [alpha/beta-Hydrolases superfamily protein] -2.161 no data
160 AT2G44080 AT2G44080 ARL, ARGOS-like -2.128 0.020
161 AT2G23290 AT2G23290 AtMYB70, myb domain protein 70, MYB70, myb domain protein 70 -2.125 0.032
162 AT3G05630 AT3G05630 PDLZ2, PHOSPHOLIPASE D ZETA 2, PLDP2, phospholipase D P2, PLDZETA2, PHOSPHOLIPASE D ZETA 2 -2.107 -0.086
163 AT2G40330 AT2G40330 PYL6, PYR1-like 6, RCAR9, regulatory components of ABA receptor 9 -2.101 0.004
164 AT2G41640 AT2G41640 [Glycosyltransferase family 61 protein] -2.095 0.173
165 AT5G47220 AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 -2.078 0.286
166 AT1G72416 AT1G72416 [Chaperone DnaJ-domain superfamily protein] -2.076 no data
167 AT5G13170 AT5G13170 AtSWEET15, SAG29, senescence-associated gene 29, SWEET15 -2.069 0.043
168 AT1G13670 AT1G13670 unknown -2.065 -0.581
169 AT5G14360 AT5G14360 [Ubiquitin-like superfamily protein] -2.056 no data
170 AT1G13480 AT1G13480 unknown -2.049 no data
171 AT1G02610 AT1G02610 [RING/FYVE/PHD zinc finger superfamily protein] -2.048 no data
172 AT5G17300 AT5G17300 RVE1, REVEILLE 1 -2.047 0.187
173 AT3G26830 AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 -2.038 0.058