4.0:Information of module
WT zebularine 5d
In comparison with Col-0 DEX Shade help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009628 response to abiotic stimulus BP 2.324e-36
GO:0044710 single-organism metabolic process BP 1.142e-31
GO:0050896 response to stimulus BP 2.807e-29
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006950 response to stress BP 1.175e-38
GO:0009605 response to external stimulus BP 4.659e-36
GO:0006952 defense response BP 5.285e-34
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WT zebularine 5d		 Log2 signal ratio
Col-0 DEX Shade
1 AT1G20750 AT1G20750 [RAD3-like DNA-binding helicase protein] 5.512 -0.162
2 AT2G15020 AT2G15020 unknown 4.439 -4.010
3 AT3G27630 AT3G27630 SMR7, SIAMESE-RELATED 7 4.273 -0.178
4 AT5G60250 AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 3.870 -0.107
5 AT4G22960 AT4G22960 unknown 3.824 -0.889
6 AT5G35057 AT5G35057 [gypsy-like retrotransposon family (Athila), has a 8.7e-292 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] 3.801 -0.696
7 AT2G41240 AT2G41240 BHLH100, basic helix-loop-helix protein 100 3.719 -0.888
8 AT3G56980 AT3G56980 BHLH039, bHLH39, basic helix-loop-helix 39, ORG3, OBP3-RESPONSIVE GENE 3 3.692 -0.913
9 AT3G01345 AT3G01345 [Expressed protein] 3.691 0.077
10 AT5G14490 AT5G14490 anac085, NAC domain containing protein 85, NAC085, NAC domain containing protein 85 3.589 -0.168
11 AT5G53230 AT5G53230 unknown 3.524 -0.573
12 AT3G56970 AT3G56970 BHLH038, bHLH38, basic helix-loop-helix 38, ORG2, OBP3-RESPONSIVE GENE 3 3.486 -0.870
13 AT1G13608 AT1G13608 [Defensin-like (DEFL) family protein] 3.342 -0.722
14 AT4G15248 AT4G15248 BBX30, B-box domain protein 30 3.271 -5.733
15 AT3G27620 AT3G27620 AOX1C, alternative oxidase 1C 3.256 0.359
16 AT3G09450 AT3G09450 unknown 3.158 -2.936
17 AT4G25330 AT4G25330 unknown 3.100 -0.696
18 AT2G16367 AT2G16367 3.040 -1.283
19 AT3G28270 AT3G28270 unknown 3.014 -0.264
20 AT5G28335 AT5G28335 [gypsy-like retrotransposon family, has a 4.8e-178 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)] 2.971 0.521
21 AT3G01600 AT3G01600 anac044, NAC domain containing protein 44, NAC044, NAC domain containing protein 44 2.889 0.404
22 AT2G17690 AT2G17690 SDC, SUPPRESSOR OF DRM1 DRM2 CMT3 2.841 -0.173
23 AT3G15310 AT3G15310 unknown 2.834 -2.681
24 AT3G58270 AT3G58270 [Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain] 2.827 0.068
25 AT2G05914 AT2G05914 2.822 0.597
26 AT2G14247 AT2G14247 [Expressed protein] 2.801 -0.427
27 AT4G39500 AT4G39500 CYP96A11, cytochrome P450, family 96, subfamily A, polypeptide 11 2.789 1.520
28 AT1G42050 AT1G42050 [pseudogene] 2.644 -0.162
29 AT4G14060 AT4G14060 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 2.527 0.245
30 AT3G28915 AT3G28915 [non-LTR retrotransposon family (LINE), has a 7.3e-24 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)] 2.499 1.421
31 AT1G13609 AT1G13609 [Defensin-like (DEFL) family protein] 2.418 -0.710
32 AT2G18193 AT2G18193 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 2.364 0.621
33 AT3G21890 AT3G21890 BBX31, B-box domain protein 31 2.209 -3.015
34 AT4G37610 AT4G37610 BT5, BTB and TAZ domain protein 5 2.191 1.049
35 AT5G45990 AT5G45990 [crooked neck protein, putative / cell cycle protein, putative] 2.150 -0.354
36 AT4G13900 AT4G13900 AtRLP49, receptor like protein 49, RLP49, receptor like protein 49 2.140 -1.322
37 AT4G21070 AT4G21070 ATBRCA1, ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, BRCA1, breast cancer susceptibility1 2.134 0.269
38 AT1G01390 AT1G01390 [UDP-Glycosyltransferase superfamily protein] 2.094 -0.125
39 AT4G19130 AT4G19130 [Replication factor-A protein 1-related] 2.093 -0.093
40 AT3G24420 AT3G24420 [alpha/beta-Hydrolases superfamily protein] 2.062 -0.019
41 AT5G58610 AT5G58610 [PHD finger transcription factor, putative] 2.030 0.420
42 AT2G30766 AT2G30766 unknown 2.026 -1.615
43 AT3G27060 AT3G27060 ATTSO2, TSO2, TSO MEANING 'UGLY' IN CHINESE 2 1.992 -0.573
44 AT3G07800 AT3G07800 AtTK1a, TK1a, thymidine kinase 1a 1.977 -0.023
45 AT5G04150 AT5G04150 BHLH101 1.955 0.153
46 AT1G47395 AT1G47395 unknown 1.934 -1.089
47 AT1G24580 AT1G24580 [RING/U-box superfamily protein] 1.925 -1.764
48 AT2G27420 AT2G27420 [Cysteine proteinases superfamily protein] 1.906 -3.232
49 AT3G30720 AT3G30720 QQS, QUA-QUINE STARCH 1.895 0.222
50 AT3G52740 AT3G52740 unknown 1.887 -1.963
51 AT1G68200 AT1G68200 [Zinc finger C-x8-C-x5-C-x3-H type family protein] 1.886 0.759
52 AT5G56550 AT5G56550 ATOXS3, OXIDATIVE STRESS 3, OXS3, OXIDATIVE STRESS 3 1.879 1.787
53 AT5G64060 AT5G64060 anac103, NAC domain containing protein 103, NAC103, NAC domain containing protein 103 1.846 -0.265
54 AT4G02390 AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase 1.842 0.107
55 AT5G24280 AT5G24280 GMI1, GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 1.800 0.017
56 AT1G47400 AT1G47400 unknown 1.799 -1.555
57 AT5G05250 AT5G05250 unknown 1.787 -0.355
58 AT2G05440 AT2G05440 ATGRP9, ARABIDOPSIS GLYCINE RICH PROTEIN 9, GRP9, GLYCINE RICH PROTEIN 9 1.780 0.001
59 AT1G74770 AT1G74770 [zinc ion binding] 1.763 0.365
60 AT2G30770 AT2G30770 CYP71A13, cytochrome P450, family 71, subfamily A, polypeptide 13 1.742 -0.532
61 AT5G53450 AT5G53450 ORG1, OBP3-responsive gene 1 1.714 -0.462
62 AT5G17300 AT5G17300 RVE1, REVEILLE 1 1.700 -1.513
63 AT3G48280 AT3G48280 CYP71A25, cytochrome P450, family 71, subfamily A, polypeptide 25 1.678 -0.616
64 AT1G08090 AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT 1.662 0.668
65 AT2G31380 AT2G31380 BBX25, B-box domain protein 25, STH, salt tolerance homologue 1.660 -1.091
66 AT2G23590 AT2G23590 ATMES8, METHYL ESTERASE 8, MES8, methyl esterase 8 1.647 -0.287
67 AT3G26320 AT3G26320 CYP71B36, cytochrome P450, family 71, subfamily B, polypeptide 36 1.626 -0.658
68 AT3G21670 AT3G21670 AtNPF6.4, NPF6.4, NRT1/ PTR family 6.4 1.616 -1.365
69 AT2G15810 AT2G15810 [Mutator-like transposase family, has a 1.5e-12 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] 1.612 0.690
70 AT3G09922 AT3G09922 ATIPS1, A. THALIANA INDUCED BY PHOSPHATE STARVATION1, IPS1, INDUCED BY PHOSPHATE STARVATION1 -5.632 -0.375
71 AT1G17710 AT1G17710 AtPEPC1, Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, PEPC1, phosphoethanolamine/phosphocholine phosphatase 1 -5.067 -0.967
72 AT1G09240 AT1G09240 ATNAS3, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, NAS3, nicotianamine synthase 3 -5.029 -1.485
73 AT1G52940 AT1G52940 ATPAP5, PAP5, purple acid phosphatase 5 -5.018 -0.162
74 AT5G03545 AT5G03545 AT4, ATIPS2, INDUCED BY PI STARVATION 2 -4.773 -0.178
75 AT2G02990 AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 -4.709 -0.126
76 AT3G25240 AT3G25240 unknown -4.582 -2.837
77 AT3G43110 AT3G43110 unknown -4.551 -1.751
78 AT2G46880 AT2G46880 ATPAP14, PAP14, purple acid phosphatase 14 -4.515 -0.956
79 AT2G45135 AT2G45135 [RING/U-box superfamily protein] -4.281 0.601
80 AT1G73010 AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 -4.254 -2.630
81 AT2G34600 AT2G34600 JAZ7, jasmonate-zim-domain protein 7, TIFY5B -4.228 1.881
82 AT1G08310 AT1G08310 [alpha/beta-Hydrolases superfamily protein] -4.131 0.004
83 AT2G45130 AT2G45130 ATSPX3, ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX3, SPX domain gene 3 -4.051 -1.730
84 AT2G11810 AT2G11810 ATMGD3, MGD3, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MGDC, monogalactosyldiacylglycerol synthase type C -3.959 -1.706
85 AT3G22275 AT3G22275 unknown -3.936 -0.478
86 AT1G23110 AT1G23110 unknown -3.925 -1.014
87 AT1G76430 AT1G76430 PHT1;9, phosphate transporter 1;9 -3.888 -0.526
88 AT3G03260 AT3G03260 HDG8, homeodomain GLABROUS 8 -3.846 -0.557
89 AT2G34210 AT2G34210 [Transcription elongation factor Spt5] -3.735 -2.139
90 AT3G44510 AT3G44510 [alpha/beta-Hydrolases superfamily protein] -3.713 0.157
91 AT1G03020 AT1G03020 [Thioredoxin superfamily protein] -3.494 -0.428
92 AT2G29460 AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 -3.271 0.460
93 AT5G09570 AT5G09570 [Cox19-like CHCH family protein] -3.231 -0.417
94 AT1G12340 AT1G12340 [Cornichon family protein] -3.193 -0.296
95 AT1G22150 AT1G22150 SULTR1;3, sulfate transporter 1;3 -3.170 -0.417
96 AT3G57157 AT3G57157 other RNA -3.166 -0.508
97 AT1G56600 AT1G56600 AtGolS2, galactinol synthase 2, GolS2, galactinol synthase 2 -3.149 -0.030
98 AT5G44420 AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A -3.113 0.279
99 AT1G11185 AT1G11185 other RNA -2.921 0.697
100 AT1G52800 AT1G52800 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -2.910 -0.612
101 AT3G23240 AT3G23240 ATERF1, ETHYLENE RESPONSE FACTOR 1, ERF1, ethylene response factor 1 -2.856 0.520
102 AT5G20790 AT5G20790 unknown -2.816 -3.476
103 AT4G21230 AT4G21230 CRK27, cysteine-rich RLK (RECEPTOR-like protein kinase) 27 -2.807 0.177
104 AT1G22990 AT1G22990 HIPP22, heavy metal associated isoprenylated plant protein 22 -2.782 -0.795
105 AT3G23870 AT3G23870 unknown -2.769 -0.597
106 AT4G24890 AT4G24890 ATPAP24, ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, PAP24, purple acid phosphatase 24 -2.756 -1.454
107 AT4G11170 AT4G11170 RMG1, Resistance Methylated Gene 1 -2.745 1.707
108 AT1G65970 AT1G65970 TPX2, thioredoxin-dependent peroxidase 2 -2.727 -0.610
109 AT5G43300 AT5G43300 AtGDPD3, GDPD3, glycerophosphodiester phosphodiesterase 3 -2.722 -0.666
110 AT4G26890 AT4G26890 MAPKKK16, mitogen-activated protein kinase kinase kinase 16 -2.685 -0.493
111 AT3G08885 AT3G08885 [pseudogene] -2.643 1.616
112 AT1G51920 AT1G51920 unknown -2.605 -0.162
113 AT1G66860 AT1G66860 [Class I glutamine amidotransferase-like superfamily protein] -2.570 0.365
114 AT5G59310 AT5G59310 LTP4, lipid transfer protein 4 -2.550 -0.863
115 AT3G61410 AT3G61410 unknown -2.490 0.013
116 AT2G44840 AT2G44840 ATERF13, ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13, EREBP, ERF13, ethylene-responsive element binding factor 13 -2.479 0.383
117 AT4G37400 AT4G37400 CYP81F3, cytochrome P450, family 81, subfamily F, polypeptide 3 -2.431 0.159
118 AT2G41230 AT2G41230 ORS1, ORGAN SIZE RELATED 1 -2.360 -0.108
119 AT1G69720 AT1G69720 HO3, heme oxygenase 3 -2.341 0.381
120 AT5G02200 AT5G02200 FHL, far-red-elongated hypocotyl1-like -2.341 1.254
121 AT3G54150 AT3G54150 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -2.334 0.611
122 AT2G17740 AT2G17740 [Cysteine/Histidine-rich C1 domain family protein] -2.325 -0.982
123 AT3G18250 AT3G18250 [Putative membrane lipoprotein] -2.258 -0.801
124 AT1G22220 AT1G22220 AUF2, auxin up-regulated f-box protein 2 -2.229 -0.574
125 AT1G02850 AT1G02850 BGLU11, beta glucosidase 11 -2.222 0.044
126 AT5G53048 AT5G53048 other RNA -2.210 -1.314
127 AT3G19680 AT3G19680 unknown -2.195 0.782
128 AT1G17380 AT1G17380 JAZ5, jasmonate-zim-domain protein 5, TIFY11A -2.175 0.484
129 AT1G72520 AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 -2.172 -0.336
130 AT2G24610 AT2G24610 ATCNGC14, cyclic nucleotide-gated channel 14, CNGC14, cyclic nucleotide-gated channel 14 -2.165 0.361
131 AT4G12490 AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -2.130 -0.988
132 AT1G23140 AT1G23140 [Calcium-dependent lipid-binding (CaLB domain) family protein] -2.115 -0.411
133 AT1G50040 AT1G50040 unknown -2.080 1.197
134 AT5G67080 AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 -2.069 0.666
135 AT3G02040 AT3G02040 AtGDPD1, GDPD1, Glycerophosphodiester phosphodiesterase 1, SRG3, senescence-related gene 3 -2.047 -1.641
136 AT4G11000 AT4G11000 [Ankyrin repeat family protein] -2.009 -0.341
137 AT3G17790 AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 -1.994 -2.542