4.0:Information of module
WR 35S 8h BL
In comparison with stele pSHR 3h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 1.495e-27
GO:0019684 photosynthesis, light reaction BP 3.883e-27
GO:0010114 response to red light BP 3.600e-19
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009220 pyrimidine ribonucleotide biosynthetic p... BP 9.813e-14
GO:0009218 pyrimidine ribonucleotide metabolic proc... BP 1.554e-13
GO:0006221 pyrimidine nucleotide biosynthetic proce... BP 4.700e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WR 35S 8h BL		 Log2 signal ratio
stele pSHR 3h BL
1 AT2G23270 AT2G23270 unknown 6.883 -0.169
2 AT5G20630 AT5G20630 ATGER3, ARABIDOPSIS THALIANA GERMIN 3, GER3, germin 3, GLP3, GERMIN-LIKE PROTEIN 3, GLP3A, GLP3B 6.539 0.358
3 AT2G04050 AT2G04050 [MATE efflux family protein] 6.342 -0.169
4 AT1G26380 AT1G26380 [FAD-binding Berberine family protein] 6.011 0.378
5 AT1G31580 AT1G31580 CXC750, ECS1 5.917 -0.169
6 AT3G16660 AT3G16660 [Pollen Ole e 1 allergen and extensin family protein] 5.863 -0.169
7 AT3G16670 AT3G16670 [Pollen Ole e 1 allergen and extensin family protein] 5.832 -0.169
8 AT3G05730 AT3G05730 [LOCATED IN: endomembrane system] 5.790 3.970
9 AT5G38430 AT5G38430 RBCS1B, Rubisco small subunit 1B 5.731 -0.592
10 AT3G14420 AT3G14420 GOX1, glycolate oxidase 1 5.726 1.513
11 AT2G04070 AT2G04070 [MATE efflux family protein] 5.575 -0.169
12 AT2G30750 AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 5.567 -0.431
13 AT5G38420 AT5G38420 RBCS2B, Rubisco small subunit 2B 5.521 0.526
14 AT5G43450 AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 5.172 0.513
15 AT2G10940 AT2G10940 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 5.139 1.512
16 AT3G47340 AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 5.011 0.166
17 AT5G38410 AT5G38410 RBCS3B, Rubisco small subunit 3B 4.974 1.721
18 AT4G26260 AT4G26260 MIOX4, myo-inositol oxygenase 4 4.956 1.143
19 AT1G26390 AT1G26390 [FAD-binding Berberine family protein] 4.798 -0.169
20 AT2G36800 AT2G36800 DOGT1, don-glucosyltransferase 1, UGT73C5, UDP-GLUCOSYL TRANSFERASE 73C5 4.795 0.358
21 AT4G17090 AT4G17090 AtBAM3, BAM3, BETA-AMYLASE 3, BMY8, BETA-AMYLASE 8, CT-BMY, chloroplast beta-amylase 4.774 -0.183
22 AT2G34430 AT2G34430 LHB1B1, light-harvesting chlorophyll-protein complex II subunit B1, LHCB1.4, LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX II SUBUNIT B1 4.753 0.979
23 AT1G19150 AT1G19150 LHCA2*1, Lhca6, photosystem I light harvesting complex gene 6 4.751 0.358
24 AT5G09570 AT5G09570 [Cox19-like CHCH family protein] 4.749 2.009
25 AT3G23250 AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 4.748 -0.282
26 AT3G45060 AT3G45060 ATNRT2.6, ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, NRT2.6, high affinity nitrate transporter 2.6 4.727 -0.169
27 AT3G01500 AT3G01500 ATBCA1, BETA CARBONIC ANHYDRASE 1, ATSABP3, ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, CA1, carbonic anhydrase 1, SABP3, SALICYLIC ACID-BINDING PROTEIN 3 4.722 1.330
28 AT4G12500 AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 4.705 -0.169
29 AT2G05070 AT2G05070 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.2, photosystem II light harvesting complex gene 2.2 4.658 -0.653
30 AT1G23130 AT1G23130 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 4.632 1.299
31 AT5G24640 AT5G24640 unknown 4.615 0.358
32 AT5G33355 AT5G33355 [Defensin-like (DEFL) family protein] 4.594 -0.703
33 AT5G25260 AT5G25260 [SPFH/Band 7/PHB domain-containing membrane-associated protein family] 4.447 -0.169
34 AT2G32690 AT2G32690 ATGRP23, GLYCINE-RICH PROTEIN 23, GRP23, glycine-rich protein 23 4.442 1.047
35 AT1G21500 AT1G21500 unknown 4.433 0.743
36 AT4G12490 AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 4.400 -0.169
37 AT5G14740 AT5G14740 BETA CA2, BETA CARBONIC ANHYDRASE 2, CA18, CARBONIC ANHYDRASE 18, CA2, carbonic anhydrase 2 4.383 0.068
38 AT5G26000 AT5G26000 AtTGG1, BGLU38, BETA GLUCOSIDASE 38, TGG1, thioglucoside glucohydrolase 1 4.345 1.048
39 AT1G29920 AT1G29920 AB165, CAB2, chlorophyll A/B-binding protein 2, LHCB1.1, LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1 4.329 -0.518
40 AT1G66100 AT1G66100 [Plant thionin] 4.247 -0.169
41 AT5G39120 AT5G39120 [RmlC-like cupins superfamily protein] 4.247 -0.703
42 AT3G27690 AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 4.140 2.822
43 AT3G46780 AT3G46780 PTAC16, plastid transcriptionally active 16 4.133 0.358
44 AT1G55260 AT1G55260 LTPG6, glycosylphosphatidylinositol-anchored lipid protein transfer 6 4.109 1.298
45 AT2G21330 AT2G21330 AtFBA1, FBA1, fructose-bisphosphate aldolase 1 3.961 0.358
46 AT1G56250 AT1G56250 AtPP2-B14, phloem protein 2-B14, PP2-B14, phloem protein 2-B14, VBF, VIP1-binding F-box protein 3.945 2.057
47 AT4G32950 AT4G32950 [Protein phosphatase 2C family protein] 3.866 0.743
48 AT5G25610 AT5G25610 ATRD22, RD22, RESPONSIVE TO DESSICATION 22 3.851 0.634
49 AT1G29910 AT1G29910 AB180, CAB3, chlorophyll A/B binding protein 3, LHCB1.2, LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2 3.845 -0.085
50 AT5G52390 AT5G52390 [PAR1 protein] 3.822 -2.472
51 AT3G14520 AT3G14520 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 3.798 -0.703
52 AT4G30540 AT4G30540 [Class I glutamine amidotransferase-like superfamily protein] 3.763 -0.169
53 AT2G42220 AT2G42220 [Rhodanese/Cell cycle control phosphatase superfamily protein] 3.755 0.567
54 AT5G46360 AT5G46360 ATKCO3, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3, KCO3, Ca2+ activated outward rectifying K+ channel 3 3.721 0.358
55 AT4G14060 AT4G14060 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 3.716 -0.169
56 AT1G47603 AT1G47603 ATPUP19, purine permease 19, PUP19, purine permease 19 3.702 -0.353
57 AT3G62760 AT3G62760 ATGSTF13 -5.037 -2.091
58 AT4G04930 AT4G04930 DES-1-LIKE -4.420 -1.865
59 AT5G38940 AT5G38940 [RmlC-like cupins superfamily protein] -4.253 -2.310
60 AT5G22580 AT5G22580 [Stress responsive A/B Barrel Domain] -3.838 -2.423
61 AT1G76220 AT1G76220 unknown -3.203 -1.416
62 AT5G44582 AT5G44582 unknown -3.098 -0.936
63 AT5G48130 AT5G48130 [Phototropic-responsive NPH3 family protein] -3.093 -0.703
64 AT3G44870 AT3G44870 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -2.943 -0.429
65 AT3G09330 AT3G09330 [Transmembrane amino acid transporter family protein] -2.914 0.383
66 AT4G15360 AT4G15360 CYP705A3, cytochrome P450, family 705, subfamily A, polypeptide 3 -2.878 0.358
67 AT2G21510 AT2G21510 [DNAJ heat shock N-terminal domain-containing protein] -2.849 -0.304
68 AT5G07550 AT5G07550 ATGRP19, GRP19, glycine-rich protein 19 -2.841 -1.092
69 AT5G20260 AT5G20260 [Exostosin family protein] -2.823 -0.169
70 AT5G66080 AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -2.771 -2.816
71 AT5G62210 AT5G62210 [Embryo-specific protein 3, (ATS3)] -2.761 -1.467
72 AT1G76620 AT1G76620 unknown -2.727 -1.398
73 AT5G57785 AT5G57785 unknown -2.675 -2.235
74 AT2G24850 AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 -2.449 1.697
75 AT3G49630 AT3G49630 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -2.436 -1.826
76 AT1G64930 AT1G64930 CYP89A7, cytochrome P450, family 87, subfamily A, polypeptide 7 -2.434 -0.117
77 AT4G33145 AT4G33145 unknown -2.425 -0.837
78 AT1G53130 AT1G53130 GRI, GRIM REAPER -2.405 -1.855
79 AT3G09280 AT3G09280 unknown -2.378 -1.337
80 AT4G01680 AT4G01680 AtMYB55, myb domain protein 55, MYB55, myb domain protein 55 -2.274 -0.141
81 AT2G46850 AT2G46850 [Protein kinase superfamily protein] -2.267 -3.703
82 AT5G66800 AT5G66800 unknown -2.260 -1.352
83 AT3G58000 AT3G58000 [VQ motif-containing protein] -2.256 -0.703
84 AT5G07190 AT5G07190 ATS3, seed gene 3 -2.160 -0.476
85 AT4G27170 AT4G27170 AT2S4, SESA4, seed storage albumin 4 -2.123 -1.301
86 AT5G35940 AT5G35940 [Mannose-binding lectin superfamily protein] -2.087 -0.587
87 AT2G41990 AT2G41990 unknown -2.073 -1.125
88 AT1G26870 AT1G26870 ANAC009, Arabidopsis NAC domain containing protein 9, FEZ, FEZ -2.072 -1.690
89 AT3G25655 AT3G25655 IDL1, inflorescence deficient in abscission (IDA)-like 1 -2.024 -1.514
90 AT4G33800 AT4G33800 unknown -1.998 -2.178
91 AT2G26870 AT2G26870 NPC2, non-specific phospholipase C2 -1.982 -0.482
92 AT1G59940 AT1G59940 ARR3, response regulator 3 -1.980 -0.793
93 AT3G56220 AT3G56220 [transcription regulators] -1.974 -0.381
94 AT3G01840 AT3G01840 LYK2, LysM-containing receptor-like kinase 2 -1.957 0.569
95 AT1G33612 AT1G33612 [Leucine-rich repeat (LRR) family protein] -1.930 0.132
96 AT3G62280 AT3G62280 [GDSL-like Lipase/Acylhydrolase superfamily protein] -1.915 -0.466
97 AT2G04480 AT2G04480 unknown -1.902 -1.000
98 AT5G10510 AT5G10510 AIL6, AINTEGUMENTA-like 6, PLT3, PLETHORA 3 -1.897 -1.641
99 AT3G59440 AT3G59440 [Calcium-binding EF-hand family protein] -1.884 -0.526
100 AT3G30180 AT3G30180 BR6OX2, brassinosteroid-6-oxidase 2, CYP85A2 -1.878 -0.922
101 AT2G23050 AT2G23050 MEL4, MAB4/ENP/NPY1-LIKE 4, NPY4, NAKED PINS IN YUC MUTANTS 4 -1.868 -0.498
102 AT2G17070 AT2G17070 unknown -1.857 -0.877
103 AT2G25130 AT2G25130 [ARM repeat superfamily protein] -1.856 -0.952
104 AT1G49110 AT1G49110 unknown -1.844 -0.278
105 AT3G52440 AT3G52440 [Dof-type zinc finger DNA-binding family protein] -1.831 -0.175
106 AT1G02575 AT1G02575 unknown -1.826 -1.884
107 AT1G05835 AT1G05835 [PHD finger protein] -1.825 -1.717
108 AT4G15370 AT4G15370 BARS1, baruol synthase 1, PEN2, PENTACYCLIC TRITERPENE SYNTHASE 2 -1.820 0.589
109 AT4G35200 AT4G35200 unknown -1.780 -0.429
110 AT5G52170 AT5G52170 HDG7, homeodomain GLABROUS 7 -1.769 -0.105
111 AT3G50870 AT3G50870 GATA18, GATA TRANSCRIPTION FACTOR 18, HAN, HANABA TANARU, MNP, MONOPOLE -1.745 -0.909