4.0:Information of module
WR 35S 8h BL
In comparison with root cap pGL2(QC pSCRBRI1) 3h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 1.495e-27
GO:0019684 photosynthesis, light reaction BP 3.883e-27
GO:0010114 response to red light BP 3.600e-19
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009220 pyrimidine ribonucleotide biosynthetic p... BP 9.813e-14
GO:0009218 pyrimidine ribonucleotide metabolic proc... BP 1.554e-13
GO:0006221 pyrimidine nucleotide biosynthetic proce... BP 4.700e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WR 35S 8h BL		 Log2 signal ratio
root cap pGL2(QC pSCRBRI1) 3h BL
1 AT2G23270 AT2G23270 unknown 6.883 -1.336
2 AT5G20630 AT5G20630 ATGER3, ARABIDOPSIS THALIANA GERMIN 3, GER3, germin 3, GLP3, GERMIN-LIKE PROTEIN 3, GLP3A, GLP3B 6.539 -1.009
3 AT2G04050 AT2G04050 [MATE efflux family protein] 6.342 -0.062
4 AT1G26380 AT1G26380 [FAD-binding Berberine family protein] 6.011 0.518
5 AT1G31580 AT1G31580 CXC750, ECS1 5.917 -0.211
6 AT3G16660 AT3G16660 [Pollen Ole e 1 allergen and extensin family protein] 5.863 -0.062
7 AT3G16670 AT3G16670 [Pollen Ole e 1 allergen and extensin family protein] 5.832 -0.062
8 AT3G05730 AT3G05730 [LOCATED IN: endomembrane system] 5.790 -0.470
9 AT5G38430 AT5G38430 RBCS1B, Rubisco small subunit 1B 5.731 0.327
10 AT3G14420 AT3G14420 GOX1, glycolate oxidase 1 5.726 0.549
11 AT2G04070 AT2G04070 [MATE efflux family protein] 5.575 1.896
12 AT2G30750 AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 5.567 -0.985
13 AT5G38420 AT5G38420 RBCS2B, Rubisco small subunit 2B 5.521 0.569
14 AT5G43450 AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 5.172 1.140
15 AT2G10940 AT2G10940 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 5.139 0.782
16 AT3G47340 AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 5.011 0.892
17 AT5G38410 AT5G38410 RBCS3B, Rubisco small subunit 3B 4.974 0.170
18 AT4G26260 AT4G26260 MIOX4, myo-inositol oxygenase 4 4.956 0.579
19 AT1G26390 AT1G26390 [FAD-binding Berberine family protein] 4.798 -0.062
20 AT2G36800 AT2G36800 DOGT1, don-glucosyltransferase 1, UGT73C5, UDP-GLUCOSYL TRANSFERASE 73C5 4.795 0.468
21 AT4G17090 AT4G17090 AtBAM3, BAM3, BETA-AMYLASE 3, BMY8, BETA-AMYLASE 8, CT-BMY, chloroplast beta-amylase 4.774 0.431
22 AT2G34430 AT2G34430 LHB1B1, light-harvesting chlorophyll-protein complex II subunit B1, LHCB1.4, LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX II SUBUNIT B1 4.753 -0.570
23 AT1G19150 AT1G19150 LHCA2*1, Lhca6, photosystem I light harvesting complex gene 6 4.751 0.853
24 AT5G09570 AT5G09570 [Cox19-like CHCH family protein] 4.749 -0.062
25 AT3G23250 AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 4.748 1.097
26 AT3G45060 AT3G45060 ATNRT2.6, ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, NRT2.6, high affinity nitrate transporter 2.6 4.727 1.808
27 AT3G01500 AT3G01500 ATBCA1, BETA CARBONIC ANHYDRASE 1, ATSABP3, ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, CA1, carbonic anhydrase 1, SABP3, SALICYLIC ACID-BINDING PROTEIN 3 4.722 0.674
28 AT4G12500 AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 4.705 0.379
29 AT2G05070 AT2G05070 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.2, photosystem II light harvesting complex gene 2.2 4.658 -0.952
30 AT1G23130 AT1G23130 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 4.632 -0.062
31 AT5G24640 AT5G24640 unknown 4.615 -0.981
32 AT5G33355 AT5G33355 [Defensin-like (DEFL) family protein] 4.594 -0.062
33 AT5G25260 AT5G25260 [SPFH/Band 7/PHB domain-containing membrane-associated protein family] 4.447 -0.451
34 AT2G32690 AT2G32690 ATGRP23, GLYCINE-RICH PROTEIN 23, GRP23, glycine-rich protein 23 4.442 0.883
35 AT1G21500 AT1G21500 unknown 4.433 -2.091
36 AT4G12490 AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 4.400 0.589
37 AT5G14740 AT5G14740 BETA CA2, BETA CARBONIC ANHYDRASE 2, CA18, CARBONIC ANHYDRASE 18, CA2, carbonic anhydrase 2 4.383 -0.152
38 AT5G26000 AT5G26000 AtTGG1, BGLU38, BETA GLUCOSIDASE 38, TGG1, thioglucoside glucohydrolase 1 4.345 1.081
39 AT1G29920 AT1G29920 AB165, CAB2, chlorophyll A/B-binding protein 2, LHCB1.1, LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1 4.329 -0.382
40 AT1G66100 AT1G66100 [Plant thionin] 4.247 -0.062
41 AT5G39120 AT5G39120 [RmlC-like cupins superfamily protein] 4.247 0.084
42 AT3G27690 AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 4.140 0.863
43 AT3G46780 AT3G46780 PTAC16, plastid transcriptionally active 16 4.133 0.521
44 AT1G55260 AT1G55260 LTPG6, glycosylphosphatidylinositol-anchored lipid protein transfer 6 4.109 -0.219
45 AT2G21330 AT2G21330 AtFBA1, FBA1, fructose-bisphosphate aldolase 1 3.961 0.112
46 AT1G56250 AT1G56250 AtPP2-B14, phloem protein 2-B14, PP2-B14, phloem protein 2-B14, VBF, VIP1-binding F-box protein 3.945 1.101
47 AT4G32950 AT4G32950 [Protein phosphatase 2C family protein] 3.866 -0.594
48 AT5G25610 AT5G25610 ATRD22, RD22, RESPONSIVE TO DESSICATION 22 3.851 1.388
49 AT1G29910 AT1G29910 AB180, CAB3, chlorophyll A/B binding protein 3, LHCB1.2, LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2 3.845 0.130
50 AT5G52390 AT5G52390 [PAR1 protein] 3.822 -0.902
51 AT3G14520 AT3G14520 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 3.798 -0.062
52 AT4G30540 AT4G30540 [Class I glutamine amidotransferase-like superfamily protein] 3.763 -0.062
53 AT2G42220 AT2G42220 [Rhodanese/Cell cycle control phosphatase superfamily protein] 3.755 -0.349
54 AT5G46360 AT5G46360 ATKCO3, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3, KCO3, Ca2+ activated outward rectifying K+ channel 3 3.721 -1.009
55 AT4G14060 AT4G14060 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 3.716 0.162
56 AT1G47603 AT1G47603 ATPUP19, purine permease 19, PUP19, purine permease 19 3.702 1.104
57 AT3G62760 AT3G62760 ATGSTF13 -5.037 -1.010
58 AT4G04930 AT4G04930 DES-1-LIKE -4.420 -1.935
59 AT5G38940 AT5G38940 [RmlC-like cupins superfamily protein] -4.253 -0.851
60 AT5G22580 AT5G22580 [Stress responsive A/B Barrel Domain] -3.838 -0.795
61 AT1G76220 AT1G76220 unknown -3.203 -1.608
62 AT5G44582 AT5G44582 unknown -3.098 0.594
63 AT5G48130 AT5G48130 [Phototropic-responsive NPH3 family protein] -3.093 -1.537
64 AT3G44870 AT3G44870 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -2.943 -0.062
65 AT3G09330 AT3G09330 [Transmembrane amino acid transporter family protein] -2.914 1.038
66 AT4G15360 AT4G15360 CYP705A3, cytochrome P450, family 705, subfamily A, polypeptide 3 -2.878 -0.594
67 AT2G21510 AT2G21510 [DNAJ heat shock N-terminal domain-containing protein] -2.849 0.394
68 AT5G07550 AT5G07550 ATGRP19, GRP19, glycine-rich protein 19 -2.841 0.854
69 AT5G20260 AT5G20260 [Exostosin family protein] -2.823 -0.062
70 AT5G66080 AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -2.771 -1.340
71 AT5G62210 AT5G62210 [Embryo-specific protein 3, (ATS3)] -2.761 -1.114
72 AT1G76620 AT1G76620 unknown -2.727 -1.719
73 AT5G57785 AT5G57785 unknown -2.675 -0.751
74 AT2G24850 AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 -2.449 1.156
75 AT3G49630 AT3G49630 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -2.436 -0.073
76 AT1G64930 AT1G64930 CYP89A7, cytochrome P450, family 87, subfamily A, polypeptide 7 -2.434 -1.445
77 AT4G33145 AT4G33145 unknown -2.425 0.143
78 AT1G53130 AT1G53130 GRI, GRIM REAPER -2.405 -0.609
79 AT3G09280 AT3G09280 unknown -2.378 -1.302
80 AT4G01680 AT4G01680 AtMYB55, myb domain protein 55, MYB55, myb domain protein 55 -2.274 -1.925
81 AT2G46850 AT2G46850 [Protein kinase superfamily protein] -2.267 -0.978
82 AT5G66800 AT5G66800 unknown -2.260 -0.225
83 AT3G58000 AT3G58000 [VQ motif-containing protein] -2.256 -0.063
84 AT5G07190 AT5G07190 ATS3, seed gene 3 -2.160 -1.199
85 AT4G27170 AT4G27170 AT2S4, SESA4, seed storage albumin 4 -2.123 -2.095
86 AT5G35940 AT5G35940 [Mannose-binding lectin superfamily protein] -2.087 -0.170
87 AT2G41990 AT2G41990 unknown -2.073 -0.475
88 AT1G26870 AT1G26870 ANAC009, Arabidopsis NAC domain containing protein 9, FEZ, FEZ -2.072 -1.904
89 AT3G25655 AT3G25655 IDL1, inflorescence deficient in abscission (IDA)-like 1 -2.024 -1.856
90 AT4G33800 AT4G33800 unknown -1.998 -0.159
91 AT2G26870 AT2G26870 NPC2, non-specific phospholipase C2 -1.982 -0.076
92 AT1G59940 AT1G59940 ARR3, response regulator 3 -1.980 -0.754
93 AT3G56220 AT3G56220 [transcription regulators] -1.974 -0.406
94 AT3G01840 AT3G01840 LYK2, LysM-containing receptor-like kinase 2 -1.957 0.927
95 AT1G33612 AT1G33612 [Leucine-rich repeat (LRR) family protein] -1.930 0.214
96 AT3G62280 AT3G62280 [GDSL-like Lipase/Acylhydrolase superfamily protein] -1.915 0.016
97 AT2G04480 AT2G04480 unknown -1.902 0.041
98 AT5G10510 AT5G10510 AIL6, AINTEGUMENTA-like 6, PLT3, PLETHORA 3 -1.897 -0.009
99 AT3G59440 AT3G59440 [Calcium-binding EF-hand family protein] -1.884 1.450
100 AT3G30180 AT3G30180 BR6OX2, brassinosteroid-6-oxidase 2, CYP85A2 -1.878 -1.220
101 AT2G23050 AT2G23050 MEL4, MAB4/ENP/NPY1-LIKE 4, NPY4, NAKED PINS IN YUC MUTANTS 4 -1.868 -0.205
102 AT2G17070 AT2G17070 unknown -1.857 -1.239
103 AT2G25130 AT2G25130 [ARM repeat superfamily protein] -1.856 -1.028
104 AT1G49110 AT1G49110 unknown -1.844 -1.333
105 AT3G52440 AT3G52440 [Dof-type zinc finger DNA-binding family protein] -1.831 -0.062
106 AT1G02575 AT1G02575 unknown -1.826 -1.306
107 AT1G05835 AT1G05835 [PHD finger protein] -1.825 -1.065
108 AT4G15370 AT4G15370 BARS1, baruol synthase 1, PEN2, PENTACYCLIC TRITERPENE SYNTHASE 2 -1.820 -0.062
109 AT4G35200 AT4G35200 unknown -1.780 -0.413
110 AT5G52170 AT5G52170 HDG7, homeodomain GLABROUS 7 -1.769 0.015
111 AT3G50870 AT3G50870 GATA18, GATA TRANSCRIPTION FACTOR 18, HAN, HANABA TANARU, MNP, MONOPOLE -1.745 -0.185