4.0:Information of module
lateral root cap-columella pBRN2 3h BL
In comparison with lateral root cap-columella pBRN2 8h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 1.823e-18
GO:0050896 response to stimulus BP 1.994e-16
GO:0010033 response to organic substance BP 1.349e-12
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 2.254e-08
GO:1901362 organic cyclic compound biosynthetic pro... BP 1.108e-07
GO:0019438 aromatic compound biosynthetic process BP 2.330e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
lateral root cap-columella pBRN2 3h BL		 Log2 signal ratio
lateral root cap-columella pBRN2 8h BL
1 AT4G23170 AT4G23170 CRK9, CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 9, EP1 4.713 0.223
2 AT4G21200 AT4G21200 ATGA2OX8, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, GA2OX8, gibberellin 2-oxidase 8 4.585 4.438
3 AT1G29500 AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 4.048 3.670
4 AT1G67980 AT1G67980 CCOAMT, caffeoyl-CoA 3-O-methyltransferase 3.947 -1.441
5 AT4G31370 AT4G31370 FLA5, FASCICLIN-like arabinogalactan protein 5 precursor 3.742 1.290
6 AT1G54950 AT1G54950 unknown 3.549 2.215
7 AT5G03310 AT5G03310 SAUR44, SMALL AUXIN UPREGULATED RNA 44 3.346 2.392
8 AT3G48740 AT3G48740 AtSWEET11, SWEET11 3.254 1.570
9 AT1G19530 AT1G19530 unknown 3.219 0.739
10 AT1G22990 AT1G22990 HIPP22, heavy metal associated isoprenylated plant protein 22 3.193 1.708
11 AT5G23660 AT5G23660 AtSWEET12, MTN3, homolog of Medicago truncatula MTN3, SWEET12 3.100 1.187
12 AT2G34820 AT2G34820 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 3.037 1.824
13 AT2G43890 AT2G43890 [Pectin lyase-like superfamily protein] 2.958 2.782
14 AT1G02930 AT1G02930 ATGST1, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, ATGSTF3, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ATGSTF6, GLUTATHIONE S-TRANSFERASE, ERD11, EARLY RESPONSIVE TO DEHYDRATION 11, GST1, GLUTATHIONE S-TRANSFERASE 1, GSTF6, glutathione S-transferase 6 2.930 -2.376
15 AT1G08090 AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT 2.874 -0.434
16 AT2G35950 AT2G35950 EDA12, embryo sac development arrest 12 2.866 1.758
17 AT3G50480 AT3G50480 HR4, homolog of RPW8 4 2.839 0.224
18 AT4G21870 AT4G21870 [HSP20-like chaperones superfamily protein] 2.774 1.355
19 AT3G11980 AT3G11980 FAR2, FATTY ACID REDUCTASE 2, MS2, MALE STERILITY 2 2.728 2.077
20 AT1G15630 AT1G15630 unknown 2.712 2.873
21 AT1G22890 AT1G22890 unknown 2.696 0.882
22 AT2G24400 AT2G24400 SAUR38, SMALL AUXIN UPREGULATED RNA 38 2.553 1.095
23 AT4G01630 AT4G01630 ATEXP17, EXPANSIN 17, ATEXPA17, expansin A17, ATHEXP ALPHA 1.13, EXPA17, expansin A17 2.514 1.888
24 AT2G45410 AT2G45410 LBD19, LOB domain-containing protein 19 -4.763 -2.109
25 AT3G62670 AT3G62670 ARR20, response regulator 20, MEE41, maternal effect embryo arrest 41, RR20, response regulator 20 -4.244 -1.637
26 AT5G57785 AT5G57785 unknown -4.067 -4.900
27 AT3G09280 AT3G09280 unknown -3.913 -3.850
28 AT3G29110 AT3G29110 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -3.872 -1.460
29 AT1G76620 AT1G76620 unknown -3.712 -1.700
30 AT3G19500 AT3G19500 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -3.708 -0.844
31 AT1G03800 AT1G03800 ATERF10, ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF10, ERF domain protein 10 -3.410 -2.731
32 AT5G66080 AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -3.166 -2.984
33 AT1G02450 AT1G02450 NIMIN-1, NIMIN1, NIM1-interacting 1 -3.005 -3.610
34 AT1G76220 AT1G76220 unknown -2.979 -2.979
35 AT1G53130 AT1G53130 GRI, GRIM REAPER -2.962 -3.161
36 AT1G72520 AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 -2.780 -0.293
37 AT3G62760 AT3G62760 ATGSTF13 -2.761 -3.666
38 AT2G46850 AT2G46850 [Protein kinase superfamily protein] -2.737 -1.695
39 AT3G02020 AT3G02020 AK3, aspartate kinase 3 -2.592 0.456
40 AT5G48130 AT5G48130 [Phototropic-responsive NPH3 family protein] -2.512 -1.786
41 AT5G23010 AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 -2.484 -0.542
42 AT4G02330 AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 -2.406 -3.380
43 AT3G19710 AT3G19710 BCAT4, branched-chain aminotransferase4 -2.388 -0.495
44 AT5G20260 AT5G20260 [Exostosin family protein] -2.384 -2.296
45 AT4G36780 AT4G36780 BEH2, BES1/BZR1 homolog 2 -2.265 -1.541
46 AT5G38200 AT5G38200 [Class I glutamine amidotransferase-like superfamily protein] -2.218 -1.793