4.0:Information of module
lateral root cap-columella pBRN2 3h BL
In comparison with QC pSCR 3h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 1.823e-18
GO:0050896 response to stimulus BP 1.994e-16
GO:0010033 response to organic substance BP 1.349e-12
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 2.254e-08
GO:1901362 organic cyclic compound biosynthetic pro... BP 1.108e-07
GO:0019438 aromatic compound biosynthetic process BP 2.330e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
lateral root cap-columella pBRN2 3h BL		 Log2 signal ratio
QC pSCR 3h BL
1 AT4G23170 AT4G23170 CRK9, CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 9, EP1 4.713 1.431
2 AT4G21200 AT4G21200 ATGA2OX8, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, GA2OX8, gibberellin 2-oxidase 8 4.585 0.310
3 AT1G29500 AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 4.048 2.521
4 AT1G67980 AT1G67980 CCOAMT, caffeoyl-CoA 3-O-methyltransferase 3.947 0.920
5 AT4G31370 AT4G31370 FLA5, FASCICLIN-like arabinogalactan protein 5 precursor 3.742 0.695
6 AT1G54950 AT1G54950 unknown 3.549 0.999
7 AT5G03310 AT5G03310 SAUR44, SMALL AUXIN UPREGULATED RNA 44 3.346 0.826
8 AT3G48740 AT3G48740 AtSWEET11, SWEET11 3.254 1.448
9 AT1G19530 AT1G19530 unknown 3.219 2.088
10 AT1G22990 AT1G22990 HIPP22, heavy metal associated isoprenylated plant protein 22 3.193 0.412
11 AT5G23660 AT5G23660 AtSWEET12, MTN3, homolog of Medicago truncatula MTN3, SWEET12 3.100 1.653
12 AT2G34820 AT2G34820 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 3.037 -0.216
13 AT2G43890 AT2G43890 [Pectin lyase-like superfamily protein] 2.958 2.344
14 AT1G02930 AT1G02930 ATGST1, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, ATGSTF3, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ATGSTF6, GLUTATHIONE S-TRANSFERASE, ERD11, EARLY RESPONSIVE TO DEHYDRATION 11, GST1, GLUTATHIONE S-TRANSFERASE 1, GSTF6, glutathione S-transferase 6 2.930 1.311
15 AT1G08090 AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT 2.874 1.519
16 AT2G35950 AT2G35950 EDA12, embryo sac development arrest 12 2.866 0.310
17 AT3G50480 AT3G50480 HR4, homolog of RPW8 4 2.839 1.489
18 AT4G21870 AT4G21870 [HSP20-like chaperones superfamily protein] 2.774 1.916
19 AT3G11980 AT3G11980 FAR2, FATTY ACID REDUCTASE 2, MS2, MALE STERILITY 2 2.728 0.231
20 AT1G15630 AT1G15630 unknown 2.712 0.251
21 AT1G22890 AT1G22890 unknown 2.696 1.257
22 AT2G24400 AT2G24400 SAUR38, SMALL AUXIN UPREGULATED RNA 38 2.553 0.803
23 AT4G01630 AT4G01630 ATEXP17, EXPANSIN 17, ATEXPA17, expansin A17, ATHEXP ALPHA 1.13, EXPA17, expansin A17 2.514 0.335
24 AT2G45410 AT2G45410 LBD19, LOB domain-containing protein 19 -4.763 -0.216
25 AT3G62670 AT3G62670 ARR20, response regulator 20, MEE41, maternal effect embryo arrest 41, RR20, response regulator 20 -4.244 -0.216
26 AT5G57785 AT5G57785 unknown -4.067 -0.796
27 AT3G09280 AT3G09280 unknown -3.913 -2.262
28 AT3G29110 AT3G29110 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -3.872 -0.216
29 AT1G76620 AT1G76620 unknown -3.712 -1.574
30 AT3G19500 AT3G19500 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -3.708 -2.034
31 AT1G03800 AT1G03800 ATERF10, ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF10, ERF domain protein 10 -3.410 -2.745
32 AT5G66080 AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -3.166 -3.711
33 AT1G02450 AT1G02450 NIMIN-1, NIMIN1, NIM1-interacting 1 -3.005 -0.216
34 AT1G76220 AT1G76220 unknown -2.979 -1.014
35 AT1G53130 AT1G53130 GRI, GRIM REAPER -2.962 -1.019
36 AT1G72520 AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 -2.780 0.419
37 AT3G62760 AT3G62760 ATGSTF13 -2.761 -2.650
38 AT2G46850 AT2G46850 [Protein kinase superfamily protein] -2.737 -1.754
39 AT3G02020 AT3G02020 AK3, aspartate kinase 3 -2.592 -0.276
40 AT5G48130 AT5G48130 [Phototropic-responsive NPH3 family protein] -2.512 -0.751
41 AT5G23010 AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 -2.484 -2.236
42 AT4G02330 AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 -2.406 -0.232
43 AT3G19710 AT3G19710 BCAT4, branched-chain aminotransferase4 -2.388 -2.007
44 AT5G20260 AT5G20260 [Exostosin family protein] -2.384 -0.216
45 AT4G36780 AT4G36780 BEH2, BES1/BZR1 homolog 2 -2.265 -0.550
46 AT5G38200 AT5G38200 [Class I glutamine amidotransferase-like superfamily protein] -2.218 -1.841