4.0:Information of module
lateral root cap-columella pBRN2 3h BL
In comparison with 21h-DC3000 hrpA help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 1.823e-18
GO:0050896 response to stimulus BP 1.994e-16
GO:0010033 response to organic substance BP 1.349e-12
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 2.254e-08
GO:1901362 organic cyclic compound biosynthetic pro... BP 1.108e-07
GO:0019438 aromatic compound biosynthetic process BP 2.330e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
lateral root cap-columella pBRN2 3h BL		 Log2 signal ratio
21h-DC3000 hrpA
1 AT4G23170 AT4G23170 CRK9, CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 9, EP1 4.713 no data
2 AT4G21200 AT4G21200 ATGA2OX8, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, GA2OX8, gibberellin 2-oxidase 8 4.585 -0.012
3 AT1G29500 AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 4.048 0.010
4 AT1G67980 AT1G67980 CCOAMT, caffeoyl-CoA 3-O-methyltransferase 3.947 -0.052
5 AT4G31370 AT4G31370 FLA5, FASCICLIN-like arabinogalactan protein 5 precursor 3.742 no data
6 AT1G54950 AT1G54950 unknown 3.549 no data
7 AT5G03310 AT5G03310 SAUR44, SMALL AUXIN UPREGULATED RNA 44 3.346 -0.107
8 AT3G48740 AT3G48740 AtSWEET11, SWEET11 3.254 -0.030
9 AT1G19530 AT1G19530 unknown 3.219 -0.011
10 AT1G22990 AT1G22990 HIPP22, heavy metal associated isoprenylated plant protein 22 3.193 -0.030
11 AT5G23660 AT5G23660 AtSWEET12, MTN3, homolog of Medicago truncatula MTN3, SWEET12 3.100 -0.230
12 AT2G34820 AT2G34820 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 3.037 -0.053
13 AT2G43890 AT2G43890 [Pectin lyase-like superfamily protein] 2.958 -0.021
14 AT1G02930 AT1G02930 ATGST1, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, ATGSTF3, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ATGSTF6, GLUTATHIONE S-TRANSFERASE, ERD11, EARLY RESPONSIVE TO DEHYDRATION 11, GST1, GLUTATHIONE S-TRANSFERASE 1, GSTF6, glutathione S-transferase 6 2.930 no data
15 AT1G08090 AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT 2.874 -0.036
16 AT2G35950 AT2G35950 EDA12, embryo sac development arrest 12 2.866 -0.052
17 AT3G50480 AT3G50480 HR4, homolog of RPW8 4 2.839 -0.002
18 AT4G21870 AT4G21870 [HSP20-like chaperones superfamily protein] 2.774 0.007
19 AT3G11980 AT3G11980 FAR2, FATTY ACID REDUCTASE 2, MS2, MALE STERILITY 2 2.728 -0.016
20 AT1G15630 AT1G15630 unknown 2.712 no data
21 AT1G22890 AT1G22890 unknown 2.696 -0.060
22 AT2G24400 AT2G24400 SAUR38, SMALL AUXIN UPREGULATED RNA 38 2.553 0.021
23 AT4G01630 AT4G01630 ATEXP17, EXPANSIN 17, ATEXPA17, expansin A17, ATHEXP ALPHA 1.13, EXPA17, expansin A17 2.514 -0.087
24 AT2G45410 AT2G45410 LBD19, LOB domain-containing protein 19 -4.763 no data
25 AT3G62670 AT3G62670 ARR20, response regulator 20, MEE41, maternal effect embryo arrest 41, RR20, response regulator 20 -4.244 no data
26 AT5G57785 AT5G57785 unknown -4.067 -0.074
27 AT3G09280 AT3G09280 unknown -3.913 -0.069
28 AT3G29110 AT3G29110 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -3.872 0.021
29 AT1G76620 AT1G76620 unknown -3.712 0.015
30 AT3G19500 AT3G19500 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -3.708 -0.093
31 AT1G03800 AT1G03800 ATERF10, ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF10, ERF domain protein 10 -3.410 no data
32 AT5G66080 AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -3.166 0.026
33 AT1G02450 AT1G02450 NIMIN-1, NIMIN1, NIM1-interacting 1 -3.005 -0.019
34 AT1G76220 AT1G76220 unknown -2.979 -0.001
35 AT1G53130 AT1G53130 GRI, GRIM REAPER -2.962 no data
36 AT1G72520 AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 -2.780 -0.202
37 AT3G62760 AT3G62760 ATGSTF13 -2.761 -0.003
38 AT2G46850 AT2G46850 [Protein kinase superfamily protein] -2.737 -0.017
39 AT3G02020 AT3G02020 AK3, aspartate kinase 3 -2.592 no data
40 AT5G48130 AT5G48130 [Phototropic-responsive NPH3 family protein] -2.512 -0.010
41 AT5G23010 AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 -2.484 -0.091
42 AT4G02330 AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 -2.406 0.019
43 AT3G19710 AT3G19710 BCAT4, branched-chain aminotransferase4 -2.388 -0.100
44 AT5G20260 AT5G20260 [Exostosin family protein] -2.384 no data
45 AT4G36780 AT4G36780 BEH2, BES1/BZR1 homolog 2 -2.265 -0.055
46 AT5G38200 AT5G38200 [Class I glutamine amidotransferase-like superfamily protein] -2.218 no data