4.0:Information of module
root cap pGL2 8h BL
In comparison with Red Light 45min  help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 2.795e-26
GO:1901700 response to oxygen-containing compound BP 6.740e-23
GO:0010033 response to organic substance BP 5.004e-22
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006606 protein import into nucleus BP 1.488e-28
GO:0044744 protein targeting to nucleus BP 1.488e-28
GO:1902593 single-organism nuclear import BP 1.488e-28
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root cap pGL2 8h BL		 Log2 signal ratio
Red Light 45min
1 AT1G75830 AT1G75830 LCR67, low-molecular-weight cysteine-rich 67, PDF1.1, PLANT DEFENSIN 1.1 8.194 -0.018
2 AT5G44120 AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 8.091 0.016
3 AT4G28520 AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 7.576 -0.081
4 AT5G54740 AT5G54740 SESA5, seed storage albumin 5 7.271 -0.044
5 AT3G22640 AT3G22640 PAP85 7.235 0.044
6 AT4G27160 AT4G27160 AT2S3, SESA3, seed storage albumin 3 7.094 -0.015
7 AT1G68250 AT1G68250 unknown 6.653 -0.052
8 AT3G15670 AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] 6.563 0.020
9 AT4G25140 AT4G25140 OLE1, OLEOSIN 1, OLEO1, oleosin 1 6.263 -0.030
10 AT4G26260 AT4G26260 MIOX4, myo-inositol oxygenase 4 6.067 -0.035
11 AT1G04560 AT1G04560 [AWPM-19-like family protein] 6.015 0.047
12 AT5G66400 AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 5.983 0.023
13 AT2G40170 AT2G40170 ATEM6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, EM6, EARLY METHIONINE-LABELLED 6, GEA6, LATE EMBRYOGENESIS ABUNDANT 6 5.528 -0.025
14 AT5G22470 AT5G22470 [NAD+ ADP-ribosyltransferases] 5.194 0.081
15 AT4G27140 AT4G27140 AT2S1, SESA1, seed storage albumin 1 5.175 0.033
16 AT1G03880 AT1G03880 CRB, CRUCIFERIN B, CRU2, cruciferin 2 4.997 -0.026
17 AT2G21490 AT2G21490 LEA, dehydrin LEA 4.975 0.021
18 AT3G27660 AT3G27660 OLE3, OLEOSIN 3, OLEO4, oleosin 4 4.887 -0.004
19 AT5G40420 AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 4.864 0.055
20 AT3G47340 AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 4.853 -0.001
21 AT4G21020 AT4G21020 [Late embryogenesis abundant protein (LEA) family protein] 4.841 0.041
22 AT2G41280 AT2G41280 ATM10, M10 4.841 -0.022
23 AT4G08620 AT4G08620 SULTR1;1, sulphate transporter 1;1 4.832 -0.055
24 AT1G15330 AT1G15330 [Cystathionine beta-synthase (CBS) protein] 4.823 -0.017
25 AT1G17810 AT1G17810 BETA-TIP, beta-tonoplast intrinsic protein 4.797 0.017
26 AT2G41260 AT2G41260 ATM17, M17 4.793 0.329
27 AT3G56350 AT3G56350 [Iron/manganese superoxide dismutase family protein] 4.718 0.030
28 AT5G45690 AT5G45690 unknown 4.639 0.011
29 AT1G48130 AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 4.611 0.043
30 AT3G45060 AT3G45060 ATNRT2.6, ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, NRT2.6, high affinity nitrate transporter 2.6 4.576 -0.007
31 AT3G22500 AT3G22500 ATECP31, LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP31 4.526 -0.018
32 AT2G28490 AT2G28490 [RmlC-like cupins superfamily protein] 4.497 0.054
33 AT3G54940 AT3G54940 [Papain family cysteine protease] 4.497 0.048
34 AT5G57550 AT5G57550 XTH25, xyloglucan endotransglucosylase/hydrolase 25, XTR3, xyloglucan endotransglycosylase 3 4.497 0.011
35 AT3G05260 AT3G05260 [NAD(P)-binding Rossmann-fold superfamily protein] 4.453 0.051
36 AT3G58450 AT3G58450 [Adenine nucleotide alpha hydrolases-like superfamily protein] 4.372 0.061
37 AT3G49700 AT3G49700 ACS9, 1-aminocyclopropane-1-carboxylate synthase 9, AtACS9, ETO3, ETHYLENE OVERPRODUCING 3 4.322 -0.011
38 AT1G72100 AT1G72100 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] 4.306 -0.010
39 AT4G21200 AT4G21200 ATGA2OX8, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, GA2OX8, gibberellin 2-oxidase 8 4.291 0.024
40 AT5G49360 AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 4.285 0.000
41 AT2G04515 AT2G04515 unknown 4.248 no data
42 AT5G07330 AT5G07330 unknown 4.087 0.029
43 AT1G52570 AT1G52570 PLDALPHA2, phospholipase D alpha 2 4.057 -0.008
44 AT1G35230 AT1G35230 AGP5, arabinogalactan protein 5 4.046 -0.064
45 AT1G11690 AT1G11690 unknown 3.993 -0.074
46 AT3G16120 AT3G16120 [Dynein light chain type 1 family protein] 3.885 0.110
47 AT5G06760 AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 3.788 -0.012
48 AT1G54870 AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] 3.709 0.041
49 AT1G51920 AT1G51920 unknown 3.603 0.040
50 AT2G44220 AT2G44220 unknown 3.532 no data
51 AT1G19960 AT1G19960 unknown 3.527 -0.037
52 AT1G68320 AT1G68320 AtMYB62, myb domain protein 62, BW62B, BW62C, MYB62, myb domain protein 62 3.517 -0.037
53 AT1G15040 AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 3.489 0.077
54 AT3G03840 AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 3.441 0.406
55 AT2G31083 AT2G31083 AtCLE5, CLE5, CLAVATA3/ESR-RELATED 5 3.369 no data
56 AT2G29010 AT2G29010 [pseudogene] 3.324 no data
57 AT5G14470 AT5G14470 AtGALK2, GALK2, galactokinase 2 3.322 0.021
58 AT4G12410 AT4G12410 SAUR35, SMALL AUXIN UPREGULATED RNA 35 3.268 0.043
59 AT5G11060 AT5G11060 KNAT4, KNOTTED1-like homeobox gene 4 3.209 0.078
60 AT1G29510 AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 3.203 0.172
61 AT1G47610 AT1G47610 [Transducin/WD40 repeat-like superfamily protein] 3.195 -0.074
62 AT2G17680 AT2G17680 unknown 3.182 0.039
63 AT2G18470 AT2G18470 AtPERK4, proline-rich extensin-like receptor kinase 4, PERK4, proline-rich extensin-like receptor kinase 4 3.151 -0.042
64 AT3G54830 AT3G54830 [Transmembrane amino acid transporter family protein] 3.141 no data
65 AT5G19880 AT5G19880 [Peroxidase superfamily protein] 3.111 -0.052
66 AT3G55970 AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 3.099 -0.055
67 AT1G74110 AT1G74110 CYP78A10, cytochrome P450, family 78, subfamily A, polypeptide 10 3.093 -0.001
68 AT3G01175 AT3G01175 unknown 3.077 -0.057
69 AT1G22890 AT1G22890 unknown 3.075 0.136
70 AT4G28850 AT4G28850 ATXTH26, XTH26, xyloglucan endotransglucosylase/hydrolase 26 3.053 0.007
71 AT5G57520 AT5G57520 ATZFP2, ZINC FINGER PROTEIN 2, ZFP2, zinc finger protein 2 3.047 -0.018
72 AT3G56400 AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 3.046 -0.038
73 AT1G29500 AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 3.044 0.193
74 AT1G24430 AT1G24430 [HXXXD-type acyl-transferase family protein] 3.028 -0.051
75 AT5G21120 AT5G21120 EIL2, ETHYLENE-INSENSITIVE3-like 2 2.991 -0.050
76 AT5G02760 AT5G02760 APD7, Arabidopsis Pp2c clade D 7 2.980 -0.007
77 AT1G29230 AT1G29230 ATCIPK18, ATWL1, WPL4-LIKE 1, CIPK18, CBL-interacting protein kinase 18, SnRK3.20, SNF1-RELATED PROTEIN KINASE 3.20, WL1, WPL4-LIKE 1 2.932 -0.024
78 AT2G20520 AT2G20520 FLA6, FASCICLIN-like arabinogalactan 6 2.930 0.017
79 AT1G52580 AT1G52580 ATRBL5, RHOMBOID-like protein 5, RBL5, RHOMBOID-like protein 5 2.925 0.043
80 AT1G73120 AT1G73120 unknown 2.873 0.021
81 AT4G30540 AT4G30540 [Class I glutamine amidotransferase-like superfamily protein] 2.859 -0.022
82 AT5G02020 AT5G02020 SIS, Salt Induced Serine rich 2.842 0.037
83 AT1G33817 AT1G33817 [copia-like retrotransposon family, has a 8.1e-100 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] 2.828 -0.002
84 AT3G01080 AT3G01080 ATWRKY58, WRKY DNA-BINDING PROTEIN 58, WRKY58, WRKY DNA-binding protein 58 2.784 -0.065
85 AT1G21120 AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 2.780 0.039
86 AT3G62760 AT3G62760 ATGSTF13 -5.163 -0.007
87 AT5G38940 AT5G38940 [RmlC-like cupins superfamily protein] -5.085 no data
88 AT1G76220 AT1G76220 unknown -5.056 0.027
89 AT4G08040 AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 -4.942 -0.022
90 AT4G04930 AT4G04930 DES-1-LIKE -4.296 0.005
91 AT5G65300 AT5G65300 unknown -3.909 0.062
92 AT3G50610 AT3G50610 unknown -3.675 -0.034
93 AT3G56710 AT3G56710 SIB1, sigma factor binding protein 1 -3.666 -0.018
94 AT5G57780 AT5G57780 P1R1, P1R1 -3.621 -0.013
95 AT4G15360 AT4G15360 CYP705A3, cytochrome P450, family 705, subfamily A, polypeptide 3 -3.577 0.003
96 AT3G57500 AT3G57500 unknown -3.559 no data
97 AT3G23250 AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 -3.519 -0.058
98 AT3G49630 AT3G49630 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -3.513 -0.018
99 AT4G01680 AT4G01680 AtMYB55, myb domain protein 55, MYB55, myb domain protein 55 -3.453 -0.030
100 AT3G11110 AT3G11110 [RING/U-box superfamily protein] -3.343 -0.009
101 AT3G20140 AT3G20140 CYP705A23, cytochrome P450, family 705, subfamily A, polypeptide 23 -3.332 0.018
102 AT3G23170 AT3G23170 unknown -3.318 -0.026
103 AT5G22580 AT5G22580 [Stress responsive A/B Barrel Domain] -3.136 0.004
104 AT3G09280 AT3G09280 unknown -3.079 -0.008
105 AT5G52750 AT5G52750 [Heavy metal transport/detoxification superfamily protein ] -3.056 -0.040
106 AT5G59060 AT5G59060 unknown -3.054 -0.012
107 AT5G57010 AT5G57010 [calmodulin-binding family protein] -3.045 no data
108 AT3G18710 AT3G18710 ATPUB29, ARABIDOPSIS THALIANA PLANT U-BOX 29, PUB29, plant U-box 29 -2.917 0.024
109 AT1G70880 AT1G70880 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -2.904 -0.045
110 AT5G57785 AT5G57785 unknown -2.890 -0.014
111 AT2G46850 AT2G46850 [Protein kinase superfamily protein] -2.872 -0.036
112 AT3G21330 AT3G21330 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -2.846 no data
113 AT1G59940 AT1G59940 ARR3, response regulator 3 -2.799 -0.031
114 AT4G36830 AT4G36830 HOS3-1 -2.766 -0.037
115 AT2G43510 AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 -2.754 0.013
116 AT2G02300 AT2G02300 AtPP2-B5, phloem protein 2-B5, PP2-B5, phloem protein 2-B5 -2.750 0.052
117 AT3G15030 AT3G15030 MEE35, maternal effect embryo arrest 35, TCP4, TCP family transcription factor 4 -2.748 -0.003
118 AT5G22300 AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 -2.610 -0.046
119 AT4G15620 AT4G15620 [Uncharacterised protein family (UPF0497)] -2.598 -0.022
120 AT2G25130 AT2G25130 [ARM repeat superfamily protein] -2.552 no data
121 AT4G36780 AT4G36780 BEH2, BES1/BZR1 homolog 2 -2.516 -0.018
122 AT5G54062 AT5G54062 unknown -2.507 no data
123 AT2G45080 AT2G45080 cycp3;1, cyclin p3;1 -2.470 -0.015
124 AT3G21800 AT3G21800 UGT71B8, UDP-glucosyl transferase 71B8 -2.459 -0.000
125 AT1G72930 AT1G72930 AtTN10, TIR, toll/interleukin-1 receptor-like, TN10, TIR-nucleotide binding site family 10 -2.431 no data
126 AT1G72940 AT1G72940 [Toll-Interleukin-Resistance (TIR) domain-containing protein] -2.418 -0.034
127 AT2G44578 AT2G44578 [RING/U-box superfamily protein] -2.407 no data
128 AT1G26870 AT1G26870 ANAC009, Arabidopsis NAC domain containing protein 9, FEZ, FEZ -2.375 -0.056
129 AT1G36622 AT1G36622 unknown -2.328 no data
130 AT1G15460 AT1G15460 ATBOR4, ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, BOR4, REQUIRES HIGH BORON 4 -2.326 -0.095
131 AT5G52310 AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A -2.301 0.017
132 AT5G17800 AT5G17800 AtMYB56, myb domain protein 56, MYB56, myb domain protein 56 -2.295 -0.020
133 AT1G53130 AT1G53130 GRI, GRIM REAPER -2.257 no data
134 AT3G16300 AT3G16300 [Uncharacterised protein family (UPF0497)] -2.231 no data
135 AT3G50800 AT3G50800 unknown -2.222 no data
136 AT5G66080 AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -2.217 -0.011
137 AT2G21510 AT2G21510 [DNAJ heat shock N-terminal domain-containing protein] -2.216 0.001
138 AT1G55020 AT1G55020 ATLOX1, ARABIDOPSIS LIPOXYGENASE 1, LOX1, lipoxygenase 1 -2.214 -0.022
139 AT4G26200 AT4G26200 ACCS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ACS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ATACS7 -2.212 -0.014
140 AT1G68390 AT1G68390 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -2.211 no data
141 AT1G08090 AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT -2.202 -0.054
142 AT4G15350 AT4G15350 CYP705A2, cytochrome P450, family 705, subfamily A, polypeptide 2 -2.191 -0.100
143 AT5G65280 AT5G65280 GCL1, GCR2-like 1 -2.183 -0.014
144 AT3G46613 AT3G46613 DVL15, DEVIL 15, RTFL4, ROTUNDIFOLIA like 4 -2.174 no data
145 AT2G23050 AT2G23050 MEL4, MAB4/ENP/NPY1-LIKE 4, NPY4, NAKED PINS IN YUC MUTANTS 4 -2.172 -0.040
146 AT3G53160 AT3G53160 UGT73C7, UDP-glucosyl transferase 73C7 -2.159 0.011
147 AT5G36150 AT5G36150 ATPEN3, putative pentacyclic triterpene synthase 3, PEN3, putative pentacyclic triterpene synthase 3 -2.149 -0.036
148 AT1G02920 AT1G02920 ATGST11, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, ATGSTF7, ATGSTF8, GST11, GLUTATHIONE S-TRANSFERASE 11, GSTF7, glutathione S-transferase 7 -2.144 no data
149 AT1G65920 AT1G65920 [Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain] -2.129 0.095
150 AT5G38020 AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -2.125 -0.058
151 AT1G18870 AT1G18870 ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ICS2, isochorismate synthase 2 -2.115 0.001
152 AT1G68470 AT1G68470 [Exostosin family protein] -2.114 -0.015
153 AT3G49570 AT3G49570 LSU3, RESPONSE TO LOW SULFUR 3 -2.110 no data
154 AT5G20510 AT5G20510 AL5, alfin-like 5 -2.102 no data
155 AT5G10510 AT5G10510 AIL6, AINTEGUMENTA-like 6, PLT3, PLETHORA 3 -2.080 0.017
156 AT2G46130 AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 -2.077 0.008
157 AT2G28870 AT2G28870 unknown -2.066 0.006
158 AT2G26870 AT2G26870 NPC2, non-specific phospholipase C2 -2.065 -0.012
159 AT5G05880 AT5G05880 [UDP-Glycosyltransferase superfamily protein] -2.053 0.011
160 AT4G01670 AT4G01670 unknown -2.015 no data
161 AT4G22470 AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] -2.013 -0.026
162 AT1G47510 AT1G47510 inositol polyphosphate 5-phosphatase 11 -2.007 no data
163 AT1G32190 AT1G32190 [alpha/beta-Hydrolases superfamily protein] -2.005 -0.038
164 AT4G36820 AT4G36820 unknown -1.995 no data
165 AT1G76500 AT1G76500 AHL29, AT-hook motif nuclear-localized protein 29, SOB3, SUPPRESSOR OF PHYB-4#3 -1.993 -0.010
166 AT3G47480 AT3G47480 [Calcium-binding EF-hand family protein] -1.993 -0.003
167 AT1G53541 AT1G53541 unknown -1.977 no data
168 AT1G76620 AT1G76620 unknown -1.973 0.003
169 AT5G51470 AT5G51470 [Auxin-responsive GH3 family protein] -1.936 -0.015