4.0:Information of module
root cap pGL2 8h BL
In comparison with lateral root cap-columella pBRN2 8h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 2.795e-26
GO:1901700 response to oxygen-containing compound BP 6.740e-23
GO:0010033 response to organic substance BP 5.004e-22
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006606 protein import into nucleus BP 1.488e-28
GO:0044744 protein targeting to nucleus BP 1.488e-28
GO:1902593 single-organism nuclear import BP 1.488e-28
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root cap pGL2 8h BL		 Log2 signal ratio
lateral root cap-columella pBRN2 8h BL
1 AT1G75830 AT1G75830 LCR67, low-molecular-weight cysteine-rich 67, PDF1.1, PLANT DEFENSIN 1.1 8.194 0.218
2 AT5G44120 AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 8.091 -0.163
3 AT4G28520 AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 7.576 -0.163
4 AT5G54740 AT5G54740 SESA5, seed storage albumin 5 7.271 -0.163
5 AT3G22640 AT3G22640 PAP85 7.235 -0.163
6 AT4G27160 AT4G27160 AT2S3, SESA3, seed storage albumin 3 7.094 -0.163
7 AT1G68250 AT1G68250 unknown 6.653 -0.163
8 AT3G15670 AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] 6.563 -1.150
9 AT4G25140 AT4G25140 OLE1, OLEOSIN 1, OLEO1, oleosin 1 6.263 0.747
10 AT4G26260 AT4G26260 MIOX4, myo-inositol oxygenase 4 6.067 3.594
11 AT1G04560 AT1G04560 [AWPM-19-like family protein] 6.015 -0.697
12 AT5G66400 AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 5.983 -0.163
13 AT2G40170 AT2G40170 ATEM6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, EM6, EARLY METHIONINE-LABELLED 6, GEA6, LATE EMBRYOGENESIS ABUNDANT 6 5.528 -0.170
14 AT5G22470 AT5G22470 [NAD+ ADP-ribosyltransferases] 5.194 -0.163
15 AT4G27140 AT4G27140 AT2S1, SESA1, seed storage albumin 1 5.175 -0.163
16 AT1G03880 AT1G03880 CRB, CRUCIFERIN B, CRU2, cruciferin 2 4.997 -0.163
17 AT2G21490 AT2G21490 LEA, dehydrin LEA 4.975 -0.163
18 AT3G27660 AT3G27660 OLE3, OLEOSIN 3, OLEO4, oleosin 4 4.887 1.236
19 AT5G40420 AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 4.864 -0.163
20 AT3G47340 AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 4.853 4.008
21 AT4G21020 AT4G21020 [Late embryogenesis abundant protein (LEA) family protein] 4.841 -1.084
22 AT2G41280 AT2G41280 ATM10, M10 4.841 -1.504
23 AT4G08620 AT4G08620 SULTR1;1, sulphate transporter 1;1 4.832 2.409
24 AT1G15330 AT1G15330 [Cystathionine beta-synthase (CBS) protein] 4.823 2.610
25 AT1G17810 AT1G17810 BETA-TIP, beta-tonoplast intrinsic protein 4.797 -0.163
26 AT2G41260 AT2G41260 ATM17, M17 4.793 -0.163
27 AT3G56350 AT3G56350 [Iron/manganese superoxide dismutase family protein] 4.718 -0.163
28 AT5G45690 AT5G45690 unknown 4.639 -0.163
29 AT1G48130 AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 4.611 -0.163
30 AT3G45060 AT3G45060 ATNRT2.6, ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, NRT2.6, high affinity nitrate transporter 2.6 4.576 2.396
31 AT3G22500 AT3G22500 ATECP31, LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP31 4.526 -0.163
32 AT2G28490 AT2G28490 [RmlC-like cupins superfamily protein] 4.497 0.216
33 AT3G54940 AT3G54940 [Papain family cysteine protease] 4.497 -0.163
34 AT5G57550 AT5G57550 XTH25, xyloglucan endotransglucosylase/hydrolase 25, XTR3, xyloglucan endotransglycosylase 3 4.497 -0.163
35 AT3G05260 AT3G05260 [NAD(P)-binding Rossmann-fold superfamily protein] 4.453 -0.371
36 AT3G58450 AT3G58450 [Adenine nucleotide alpha hydrolases-like superfamily protein] 4.372 1.316
37 AT3G49700 AT3G49700 ACS9, 1-aminocyclopropane-1-carboxylate synthase 9, AtACS9, ETO3, ETHYLENE OVERPRODUCING 3 4.322 2.137
38 AT1G72100 AT1G72100 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] 4.306 1.328
39 AT4G21200 AT4G21200 ATGA2OX8, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, GA2OX8, gibberellin 2-oxidase 8 4.291 4.438
40 AT5G49360 AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 4.285 1.579
41 AT2G04515 AT2G04515 unknown 4.248 -0.163
42 AT5G07330 AT5G07330 unknown 4.087 -1.085
43 AT1G52570 AT1G52570 PLDALPHA2, phospholipase D alpha 2 4.057 0.987
44 AT1G35230 AT1G35230 AGP5, arabinogalactan protein 5 4.046 -0.112
45 AT1G11690 AT1G11690 unknown 3.993 1.866
46 AT3G16120 AT3G16120 [Dynein light chain type 1 family protein] 3.885 0.993
47 AT5G06760 AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 3.788 0.977
48 AT1G54870 AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] 3.709 -0.163
49 AT1G51920 AT1G51920 unknown 3.603 1.938
50 AT2G44220 AT2G44220 unknown 3.532 2.326
51 AT1G19960 AT1G19960 unknown 3.527 0.181
52 AT1G68320 AT1G68320 AtMYB62, myb domain protein 62, BW62B, BW62C, MYB62, myb domain protein 62 3.517 -0.163
53 AT1G15040 AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 3.489 1.941
54 AT3G03840 AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 3.441 -0.163
55 AT2G31083 AT2G31083 AtCLE5, CLE5, CLAVATA3/ESR-RELATED 5 3.369 -0.002
56 AT2G29010 AT2G29010 [pseudogene] 3.324 1.728
57 AT5G14470 AT5G14470 AtGALK2, GALK2, galactokinase 2 3.322 1.273
58 AT4G12410 AT4G12410 SAUR35, SMALL AUXIN UPREGULATED RNA 35 3.268 -0.312
59 AT5G11060 AT5G11060 KNAT4, KNOTTED1-like homeobox gene 4 3.209 0.747
60 AT1G29510 AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 3.203 0.006
61 AT1G47610 AT1G47610 [Transducin/WD40 repeat-like superfamily protein] 3.195 1.287
62 AT2G17680 AT2G17680 unknown 3.182 2.552
63 AT2G18470 AT2G18470 AtPERK4, proline-rich extensin-like receptor kinase 4, PERK4, proline-rich extensin-like receptor kinase 4 3.151 1.709
64 AT3G54830 AT3G54830 [Transmembrane amino acid transporter family protein] 3.141 2.138
65 AT5G19880 AT5G19880 [Peroxidase superfamily protein] 3.111 1.825
66 AT3G55970 AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 3.099 2.726
67 AT1G74110 AT1G74110 CYP78A10, cytochrome P450, family 78, subfamily A, polypeptide 10 3.093 2.435
68 AT3G01175 AT3G01175 unknown 3.077 1.282
69 AT1G22890 AT1G22890 unknown 3.075 0.882
70 AT4G28850 AT4G28850 ATXTH26, XTH26, xyloglucan endotransglucosylase/hydrolase 26 3.053 0.281
71 AT5G57520 AT5G57520 ATZFP2, ZINC FINGER PROTEIN 2, ZFP2, zinc finger protein 2 3.047 2.263
72 AT3G56400 AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 3.046 0.788
73 AT1G29500 AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 3.044 3.670
74 AT1G24430 AT1G24430 [HXXXD-type acyl-transferase family protein] 3.028 1.102
75 AT5G21120 AT5G21120 EIL2, ETHYLENE-INSENSITIVE3-like 2 2.991 1.662
76 AT5G02760 AT5G02760 APD7, Arabidopsis Pp2c clade D 7 2.980 0.976
77 AT1G29230 AT1G29230 ATCIPK18, ATWL1, WPL4-LIKE 1, CIPK18, CBL-interacting protein kinase 18, SnRK3.20, SNF1-RELATED PROTEIN KINASE 3.20, WL1, WPL4-LIKE 1 2.932 2.024
78 AT2G20520 AT2G20520 FLA6, FASCICLIN-like arabinogalactan 6 2.930 0.441
79 AT1G52580 AT1G52580 ATRBL5, RHOMBOID-like protein 5, RBL5, RHOMBOID-like protein 5 2.925 1.087
80 AT1G73120 AT1G73120 unknown 2.873 1.188
81 AT4G30540 AT4G30540 [Class I glutamine amidotransferase-like superfamily protein] 2.859 3.251
82 AT5G02020 AT5G02020 SIS, Salt Induced Serine rich 2.842 1.091
83 AT1G33817 AT1G33817 [copia-like retrotransposon family, has a 8.1e-100 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] 2.828 1.842
84 AT3G01080 AT3G01080 ATWRKY58, WRKY DNA-BINDING PROTEIN 58, WRKY58, WRKY DNA-binding protein 58 2.784 0.815
85 AT1G21120 AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 2.780 -1.543
86 AT3G62760 AT3G62760 ATGSTF13 -5.163 -3.666
87 AT5G38940 AT5G38940 [RmlC-like cupins superfamily protein] -5.085 -2.993
88 AT1G76220 AT1G76220 unknown -5.056 -2.979
89 AT4G08040 AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 -4.942 -2.354
90 AT4G04930 AT4G04930 DES-1-LIKE -4.296 -1.714
91 AT5G65300 AT5G65300 unknown -3.909 -1.033
92 AT3G50610 AT3G50610 unknown -3.675 -1.190
93 AT3G56710 AT3G56710 SIB1, sigma factor binding protein 1 -3.666 -1.458
94 AT5G57780 AT5G57780 P1R1, P1R1 -3.621 -0.489
95 AT4G15360 AT4G15360 CYP705A3, cytochrome P450, family 705, subfamily A, polypeptide 3 -3.577 -2.282
96 AT3G57500 AT3G57500 unknown -3.559 -0.718
97 AT3G23250 AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 -3.519 0.956
98 AT3G49630 AT3G49630 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -3.513 -1.360
99 AT4G01680 AT4G01680 AtMYB55, myb domain protein 55, MYB55, myb domain protein 55 -3.453 -1.662
100 AT3G11110 AT3G11110 [RING/U-box superfamily protein] -3.343 -2.841
101 AT3G20140 AT3G20140 CYP705A23, cytochrome P450, family 705, subfamily A, polypeptide 23 -3.332 -2.402
102 AT3G23170 AT3G23170 unknown -3.318 -1.728
103 AT5G22580 AT5G22580 [Stress responsive A/B Barrel Domain] -3.136 -3.824
104 AT3G09280 AT3G09280 unknown -3.079 -3.850
105 AT5G52750 AT5G52750 [Heavy metal transport/detoxification superfamily protein ] -3.056 -0.974
106 AT5G59060 AT5G59060 unknown -3.054 -1.885
107 AT5G57010 AT5G57010 [calmodulin-binding family protein] -3.045 -1.434
108 AT3G18710 AT3G18710 ATPUB29, ARABIDOPSIS THALIANA PLANT U-BOX 29, PUB29, plant U-box 29 -2.917 -0.586
109 AT1G70880 AT1G70880 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -2.904 -2.615
110 AT5G57785 AT5G57785 unknown -2.890 -4.900
111 AT2G46850 AT2G46850 [Protein kinase superfamily protein] -2.872 -1.695
112 AT3G21330 AT3G21330 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -2.846 0.253
113 AT1G59940 AT1G59940 ARR3, response regulator 3 -2.799 -1.464
114 AT4G36830 AT4G36830 HOS3-1 -2.766 -0.601
115 AT2G43510 AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 -2.754 -0.807
116 AT2G02300 AT2G02300 AtPP2-B5, phloem protein 2-B5, PP2-B5, phloem protein 2-B5 -2.750 -0.522
117 AT3G15030 AT3G15030 MEE35, maternal effect embryo arrest 35, TCP4, TCP family transcription factor 4 -2.748 1.477
118 AT5G22300 AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 -2.610 -1.189
119 AT4G15620 AT4G15620 [Uncharacterised protein family (UPF0497)] -2.598 -0.163
120 AT2G25130 AT2G25130 [ARM repeat superfamily protein] -2.552 -2.356
121 AT4G36780 AT4G36780 BEH2, BES1/BZR1 homolog 2 -2.516 -1.541
122 AT5G54062 AT5G54062 unknown -2.507 -1.878
123 AT2G45080 AT2G45080 cycp3;1, cyclin p3;1 -2.470 -2.051
124 AT3G21800 AT3G21800 UGT71B8, UDP-glucosyl transferase 71B8 -2.459 -0.019
125 AT1G72930 AT1G72930 AtTN10, TIR, toll/interleukin-1 receptor-like, TN10, TIR-nucleotide binding site family 10 -2.431 0.183
126 AT1G72940 AT1G72940 [Toll-Interleukin-Resistance (TIR) domain-containing protein] -2.418 -0.300
127 AT2G44578 AT2G44578 [RING/U-box superfamily protein] -2.407 -0.318
128 AT1G26870 AT1G26870 ANAC009, Arabidopsis NAC domain containing protein 9, FEZ, FEZ -2.375 -1.267
129 AT1G36622 AT1G36622 unknown -2.328 -4.576
130 AT1G15460 AT1G15460 ATBOR4, ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, BOR4, REQUIRES HIGH BORON 4 -2.326 -0.805
131 AT5G52310 AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A -2.301 0.025
132 AT5G17800 AT5G17800 AtMYB56, myb domain protein 56, MYB56, myb domain protein 56 -2.295 -0.352
133 AT1G53130 AT1G53130 GRI, GRIM REAPER -2.257 -3.161
134 AT3G16300 AT3G16300 [Uncharacterised protein family (UPF0497)] -2.231 -1.378
135 AT3G50800 AT3G50800 unknown -2.222 -1.908
136 AT5G66080 AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -2.217 -2.984
137 AT2G21510 AT2G21510 [DNAJ heat shock N-terminal domain-containing protein] -2.216 -0.151
138 AT1G55020 AT1G55020 ATLOX1, ARABIDOPSIS LIPOXYGENASE 1, LOX1, lipoxygenase 1 -2.214 -0.618
139 AT4G26200 AT4G26200 ACCS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ACS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ATACS7 -2.212 0.244
140 AT1G68390 AT1G68390 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -2.211 -0.762
141 AT1G08090 AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT -2.202 -0.434
142 AT4G15350 AT4G15350 CYP705A2, cytochrome P450, family 705, subfamily A, polypeptide 2 -2.191 -0.592
143 AT5G65280 AT5G65280 GCL1, GCR2-like 1 -2.183 -0.547
144 AT3G46613 AT3G46613 DVL15, DEVIL 15, RTFL4, ROTUNDIFOLIA like 4 -2.174 -0.860
145 AT2G23050 AT2G23050 MEL4, MAB4/ENP/NPY1-LIKE 4, NPY4, NAKED PINS IN YUC MUTANTS 4 -2.172 -0.944
146 AT3G53160 AT3G53160 UGT73C7, UDP-glucosyl transferase 73C7 -2.159 0.067
147 AT5G36150 AT5G36150 ATPEN3, putative pentacyclic triterpene synthase 3, PEN3, putative pentacyclic triterpene synthase 3 -2.149 0.475
148 AT1G02920 AT1G02920 ATGST11, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, ATGSTF7, ATGSTF8, GST11, GLUTATHIONE S-TRANSFERASE 11, GSTF7, glutathione S-transferase 7 -2.144 -2.185
149 AT1G65920 AT1G65920 [Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain] -2.129 -0.626
150 AT5G38020 AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -2.125 -0.965
151 AT1G18870 AT1G18870 ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ICS2, isochorismate synthase 2 -2.115 -1.216
152 AT1G68470 AT1G68470 [Exostosin family protein] -2.114 0.718
153 AT3G49570 AT3G49570 LSU3, RESPONSE TO LOW SULFUR 3 -2.110 -0.123
154 AT5G20510 AT5G20510 AL5, alfin-like 5 -2.102 -0.056
155 AT5G10510 AT5G10510 AIL6, AINTEGUMENTA-like 6, PLT3, PLETHORA 3 -2.080 -1.004
156 AT2G46130 AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 -2.077 -0.505
157 AT2G28870 AT2G28870 unknown -2.066 -0.617
158 AT2G26870 AT2G26870 NPC2, non-specific phospholipase C2 -2.065 -0.960
159 AT5G05880 AT5G05880 [UDP-Glycosyltransferase superfamily protein] -2.053 -0.775
160 AT4G01670 AT4G01670 unknown -2.015 -0.683
161 AT4G22470 AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] -2.013 -0.419
162 AT1G47510 AT1G47510 inositol polyphosphate 5-phosphatase 11 -2.007 0.419
163 AT1G32190 AT1G32190 [alpha/beta-Hydrolases superfamily protein] -2.005 -1.049
164 AT4G36820 AT4G36820 unknown -1.995 0.662
165 AT1G76500 AT1G76500 AHL29, AT-hook motif nuclear-localized protein 29, SOB3, SUPPRESSOR OF PHYB-4#3 -1.993 -1.302
166 AT3G47480 AT3G47480 [Calcium-binding EF-hand family protein] -1.993 -1.282
167 AT1G53541 AT1G53541 unknown -1.977 -1.617
168 AT1G76620 AT1G76620 unknown -1.973 -1.700
169 AT5G51470 AT5G51470 [Auxin-responsive GH3 family protein] -1.936 -0.515