4.0:Information of module
root cap pGL2 8h BL
In comparison with low CO2 + dark help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 2.795e-26
GO:1901700 response to oxygen-containing compound BP 6.740e-23
GO:0010033 response to organic substance BP 5.004e-22
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006606 protein import into nucleus BP 1.488e-28
GO:0044744 protein targeting to nucleus BP 1.488e-28
GO:1902593 single-organism nuclear import BP 1.488e-28
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root cap pGL2 8h BL		 Log2 signal ratio
low CO2 + dark
1 AT1G75830 AT1G75830 LCR67, low-molecular-weight cysteine-rich 67, PDF1.1, PLANT DEFENSIN 1.1 8.194 0.074
2 AT5G44120 AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 8.091 -0.047
3 AT4G28520 AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 7.576 0.050
4 AT5G54740 AT5G54740 SESA5, seed storage albumin 5 7.271 0.008
5 AT3G22640 AT3G22640 PAP85 7.235 0.414
6 AT4G27160 AT4G27160 AT2S3, SESA3, seed storage albumin 3 7.094 0.021
7 AT1G68250 AT1G68250 unknown 6.653 0.052
8 AT3G15670 AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] 6.563 0.065
9 AT4G25140 AT4G25140 OLE1, OLEOSIN 1, OLEO1, oleosin 1 6.263 -0.033
10 AT4G26260 AT4G26260 MIOX4, myo-inositol oxygenase 4 6.067 0.315
11 AT1G04560 AT1G04560 [AWPM-19-like family protein] 6.015 0.089
12 AT5G66400 AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 5.983 0.556
13 AT2G40170 AT2G40170 ATEM6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, EM6, EARLY METHIONINE-LABELLED 6, GEA6, LATE EMBRYOGENESIS ABUNDANT 6 5.528 -0.023
14 AT5G22470 AT5G22470 [NAD+ ADP-ribosyltransferases] 5.194 0.119
15 AT4G27140 AT4G27140 AT2S1, SESA1, seed storage albumin 1 5.175 0.080
16 AT1G03880 AT1G03880 CRB, CRUCIFERIN B, CRU2, cruciferin 2 4.997 -0.029
17 AT2G21490 AT2G21490 LEA, dehydrin LEA 4.975 0.029
18 AT3G27660 AT3G27660 OLE3, OLEOSIN 3, OLEO4, oleosin 4 4.887 0.001
19 AT5G40420 AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 4.864 0.019
20 AT3G47340 AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 4.853 1.125
21 AT4G21020 AT4G21020 [Late embryogenesis abundant protein (LEA) family protein] 4.841 0.003
22 AT2G41280 AT2G41280 ATM10, M10 4.841 0.125
23 AT4G08620 AT4G08620 SULTR1;1, sulphate transporter 1;1 4.832 -0.044
24 AT1G15330 AT1G15330 [Cystathionine beta-synthase (CBS) protein] 4.823 0.383
25 AT1G17810 AT1G17810 BETA-TIP, beta-tonoplast intrinsic protein 4.797 0.008
26 AT2G41260 AT2G41260 ATM17, M17 4.793 0.074
27 AT3G56350 AT3G56350 [Iron/manganese superoxide dismutase family protein] 4.718 -0.031
28 AT5G45690 AT5G45690 unknown 4.639 0.038
29 AT1G48130 AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 4.611 0.053
30 AT3G45060 AT3G45060 ATNRT2.6, ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, NRT2.6, high affinity nitrate transporter 2.6 4.576 0.082
31 AT3G22500 AT3G22500 ATECP31, LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP31 4.526 -0.026
32 AT2G28490 AT2G28490 [RmlC-like cupins superfamily protein] 4.497 -0.006
33 AT3G54940 AT3G54940 [Papain family cysteine protease] 4.497 0.046
34 AT5G57550 AT5G57550 XTH25, xyloglucan endotransglucosylase/hydrolase 25, XTR3, xyloglucan endotransglycosylase 3 4.497 0.468
35 AT3G05260 AT3G05260 [NAD(P)-binding Rossmann-fold superfamily protein] 4.453 0.044
36 AT3G58450 AT3G58450 [Adenine nucleotide alpha hydrolases-like superfamily protein] 4.372 0.038
37 AT3G49700 AT3G49700 ACS9, 1-aminocyclopropane-1-carboxylate synthase 9, AtACS9, ETO3, ETHYLENE OVERPRODUCING 3 4.322 0.049
38 AT1G72100 AT1G72100 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] 4.306 0.003
39 AT4G21200 AT4G21200 ATGA2OX8, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, GA2OX8, gibberellin 2-oxidase 8 4.291 0.038
40 AT5G49360 AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 4.285 0.610
41 AT2G04515 AT2G04515 unknown 4.248 no data
42 AT5G07330 AT5G07330 unknown 4.087 0.089
43 AT1G52570 AT1G52570 PLDALPHA2, phospholipase D alpha 2 4.057 -0.016
44 AT1G35230 AT1G35230 AGP5, arabinogalactan protein 5 4.046 0.213
45 AT1G11690 AT1G11690 unknown 3.993 0.040
46 AT3G16120 AT3G16120 [Dynein light chain type 1 family protein] 3.885 0.137
47 AT5G06760 AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 3.788 0.456
48 AT1G54870 AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] 3.709 0.065
49 AT1G51920 AT1G51920 unknown 3.603 0.007
50 AT2G44220 AT2G44220 unknown 3.532 no data
51 AT1G19960 AT1G19960 unknown 3.527 -0.468
52 AT1G68320 AT1G68320 AtMYB62, myb domain protein 62, BW62B, BW62C, MYB62, myb domain protein 62 3.517 0.025
53 AT1G15040 AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 3.489 0.298
54 AT3G03840 AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 3.441 0.122
55 AT2G31083 AT2G31083 AtCLE5, CLE5, CLAVATA3/ESR-RELATED 5 3.369 no data
56 AT2G29010 AT2G29010 [pseudogene] 3.324 no data
57 AT5G14470 AT5G14470 AtGALK2, GALK2, galactokinase 2 3.322 0.648
58 AT4G12410 AT4G12410 SAUR35, SMALL AUXIN UPREGULATED RNA 35 3.268 0.062
59 AT5G11060 AT5G11060 KNAT4, KNOTTED1-like homeobox gene 4 3.209 0.082
60 AT1G29510 AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 3.203 0.129
61 AT1G47610 AT1G47610 [Transducin/WD40 repeat-like superfamily protein] 3.195 0.071
62 AT2G17680 AT2G17680 unknown 3.182 0.019
63 AT2G18470 AT2G18470 AtPERK4, proline-rich extensin-like receptor kinase 4, PERK4, proline-rich extensin-like receptor kinase 4 3.151 -0.014
64 AT3G54830 AT3G54830 [Transmembrane amino acid transporter family protein] 3.141 no data
65 AT5G19880 AT5G19880 [Peroxidase superfamily protein] 3.111 0.027
66 AT3G55970 AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 3.099 0.008
67 AT1G74110 AT1G74110 CYP78A10, cytochrome P450, family 78, subfamily A, polypeptide 10 3.093 -0.004
68 AT3G01175 AT3G01175 unknown 3.077 0.051
69 AT1G22890 AT1G22890 unknown 3.075 0.802
70 AT4G28850 AT4G28850 ATXTH26, XTH26, xyloglucan endotransglucosylase/hydrolase 26 3.053 0.008
71 AT5G57520 AT5G57520 ATZFP2, ZINC FINGER PROTEIN 2, ZFP2, zinc finger protein 2 3.047 0.086
72 AT3G56400 AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 3.046 -0.094
73 AT1G29500 AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 3.044 0.209
74 AT1G24430 AT1G24430 [HXXXD-type acyl-transferase family protein] 3.028 0.028
75 AT5G21120 AT5G21120 EIL2, ETHYLENE-INSENSITIVE3-like 2 2.991 0.070
76 AT5G02760 AT5G02760 APD7, Arabidopsis Pp2c clade D 7 2.980 -0.015
77 AT1G29230 AT1G29230 ATCIPK18, ATWL1, WPL4-LIKE 1, CIPK18, CBL-interacting protein kinase 18, SnRK3.20, SNF1-RELATED PROTEIN KINASE 3.20, WL1, WPL4-LIKE 1 2.932 0.093
78 AT2G20520 AT2G20520 FLA6, FASCICLIN-like arabinogalactan 6 2.930 0.035
79 AT1G52580 AT1G52580 ATRBL5, RHOMBOID-like protein 5, RBL5, RHOMBOID-like protein 5 2.925 0.069
80 AT1G73120 AT1G73120 unknown 2.873 0.071
81 AT4G30540 AT4G30540 [Class I glutamine amidotransferase-like superfamily protein] 2.859 0.006
82 AT5G02020 AT5G02020 SIS, Salt Induced Serine rich 2.842 0.962
83 AT1G33817 AT1G33817 [copia-like retrotransposon family, has a 8.1e-100 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] 2.828 0.032
84 AT3G01080 AT3G01080 ATWRKY58, WRKY DNA-BINDING PROTEIN 58, WRKY58, WRKY DNA-binding protein 58 2.784 0.037
85 AT1G21120 AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 2.780 0.305
86 AT3G62760 AT3G62760 ATGSTF13 -5.163 -0.005
87 AT5G38940 AT5G38940 [RmlC-like cupins superfamily protein] -5.085 no data
88 AT1G76220 AT1G76220 unknown -5.056 0.013
89 AT4G08040 AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 -4.942 0.077
90 AT4G04930 AT4G04930 DES-1-LIKE -4.296 0.040
91 AT5G65300 AT5G65300 unknown -3.909 0.151
92 AT3G50610 AT3G50610 unknown -3.675 -0.024
93 AT3G56710 AT3G56710 SIB1, sigma factor binding protein 1 -3.666 -0.074
94 AT5G57780 AT5G57780 P1R1, P1R1 -3.621 -0.004
95 AT4G15360 AT4G15360 CYP705A3, cytochrome P450, family 705, subfamily A, polypeptide 3 -3.577 -0.002
96 AT3G57500 AT3G57500 unknown -3.559 no data
97 AT3G23250 AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 -3.519 0.022
98 AT3G49630 AT3G49630 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -3.513 0.044
99 AT4G01680 AT4G01680 AtMYB55, myb domain protein 55, MYB55, myb domain protein 55 -3.453 0.061
100 AT3G11110 AT3G11110 [RING/U-box superfamily protein] -3.343 -0.069
101 AT3G20140 AT3G20140 CYP705A23, cytochrome P450, family 705, subfamily A, polypeptide 23 -3.332 0.054
102 AT3G23170 AT3G23170 unknown -3.318 -0.191
103 AT5G22580 AT5G22580 [Stress responsive A/B Barrel Domain] -3.136 -0.043
104 AT3G09280 AT3G09280 unknown -3.079 -0.004
105 AT5G52750 AT5G52750 [Heavy metal transport/detoxification superfamily protein ] -3.056 0.396
106 AT5G59060 AT5G59060 unknown -3.054 0.005
107 AT5G57010 AT5G57010 [calmodulin-binding family protein] -3.045 no data
108 AT3G18710 AT3G18710 ATPUB29, ARABIDOPSIS THALIANA PLANT U-BOX 29, PUB29, plant U-box 29 -2.917 -0.138
109 AT1G70880 AT1G70880 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -2.904 -0.018
110 AT5G57785 AT5G57785 unknown -2.890 0.364
111 AT2G46850 AT2G46850 [Protein kinase superfamily protein] -2.872 0.006
112 AT3G21330 AT3G21330 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -2.846 no data
113 AT1G59940 AT1G59940 ARR3, response regulator 3 -2.799 0.107
114 AT4G36830 AT4G36830 HOS3-1 -2.766 -0.008
115 AT2G43510 AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 -2.754 0.020
116 AT2G02300 AT2G02300 AtPP2-B5, phloem protein 2-B5, PP2-B5, phloem protein 2-B5 -2.750 0.029
117 AT3G15030 AT3G15030 MEE35, maternal effect embryo arrest 35, TCP4, TCP family transcription factor 4 -2.748 -0.307
118 AT5G22300 AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 -2.610 -0.148
119 AT4G15620 AT4G15620 [Uncharacterised protein family (UPF0497)] -2.598 -0.141
120 AT2G25130 AT2G25130 [ARM repeat superfamily protein] -2.552 no data
121 AT4G36780 AT4G36780 BEH2, BES1/BZR1 homolog 2 -2.516 0.396
122 AT5G54062 AT5G54062 unknown -2.507 no data
123 AT2G45080 AT2G45080 cycp3;1, cyclin p3;1 -2.470 -0.034
124 AT3G21800 AT3G21800 UGT71B8, UDP-glucosyl transferase 71B8 -2.459 0.018
125 AT1G72930 AT1G72930 AtTN10, TIR, toll/interleukin-1 receptor-like, TN10, TIR-nucleotide binding site family 10 -2.431 no data
126 AT1G72940 AT1G72940 [Toll-Interleukin-Resistance (TIR) domain-containing protein] -2.418 0.108
127 AT2G44578 AT2G44578 [RING/U-box superfamily protein] -2.407 no data
128 AT1G26870 AT1G26870 ANAC009, Arabidopsis NAC domain containing protein 9, FEZ, FEZ -2.375 0.050
129 AT1G36622 AT1G36622 unknown -2.328 no data
130 AT1G15460 AT1G15460 ATBOR4, ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, BOR4, REQUIRES HIGH BORON 4 -2.326 0.037
131 AT5G52310 AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A -2.301 0.072
132 AT5G17800 AT5G17800 AtMYB56, myb domain protein 56, MYB56, myb domain protein 56 -2.295 -0.007
133 AT1G53130 AT1G53130 GRI, GRIM REAPER -2.257 no data
134 AT3G16300 AT3G16300 [Uncharacterised protein family (UPF0497)] -2.231 no data
135 AT3G50800 AT3G50800 unknown -2.222 no data
136 AT5G66080 AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -2.217 0.074
137 AT2G21510 AT2G21510 [DNAJ heat shock N-terminal domain-containing protein] -2.216 0.014
138 AT1G55020 AT1G55020 ATLOX1, ARABIDOPSIS LIPOXYGENASE 1, LOX1, lipoxygenase 1 -2.214 -0.158
139 AT4G26200 AT4G26200 ACCS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ACS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ATACS7 -2.212 0.068
140 AT1G68390 AT1G68390 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -2.211 no data
141 AT1G08090 AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT -2.202 -0.008
142 AT4G15350 AT4G15350 CYP705A2, cytochrome P450, family 705, subfamily A, polypeptide 2 -2.191 0.025
143 AT5G65280 AT5G65280 GCL1, GCR2-like 1 -2.183 0.023
144 AT3G46613 AT3G46613 DVL15, DEVIL 15, RTFL4, ROTUNDIFOLIA like 4 -2.174 no data
145 AT2G23050 AT2G23050 MEL4, MAB4/ENP/NPY1-LIKE 4, NPY4, NAKED PINS IN YUC MUTANTS 4 -2.172 -0.017
146 AT3G53160 AT3G53160 UGT73C7, UDP-glucosyl transferase 73C7 -2.159 0.083
147 AT5G36150 AT5G36150 ATPEN3, putative pentacyclic triterpene synthase 3, PEN3, putative pentacyclic triterpene synthase 3 -2.149 -0.023
148 AT1G02920 AT1G02920 ATGST11, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, ATGSTF7, ATGSTF8, GST11, GLUTATHIONE S-TRANSFERASE 11, GSTF7, glutathione S-transferase 7 -2.144 no data
149 AT1G65920 AT1G65920 [Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain] -2.129 -0.215
150 AT5G38020 AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -2.125 -0.053
151 AT1G18870 AT1G18870 ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ICS2, isochorismate synthase 2 -2.115 -0.088
152 AT1G68470 AT1G68470 [Exostosin family protein] -2.114 -0.075
153 AT3G49570 AT3G49570 LSU3, RESPONSE TO LOW SULFUR 3 -2.110 no data
154 AT5G20510 AT5G20510 AL5, alfin-like 5 -2.102 no data
155 AT5G10510 AT5G10510 AIL6, AINTEGUMENTA-like 6, PLT3, PLETHORA 3 -2.080 -0.033
156 AT2G46130 AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 -2.077 0.021
157 AT2G28870 AT2G28870 unknown -2.066 -0.046
158 AT2G26870 AT2G26870 NPC2, non-specific phospholipase C2 -2.065 -0.071
159 AT5G05880 AT5G05880 [UDP-Glycosyltransferase superfamily protein] -2.053 0.107
160 AT4G01670 AT4G01670 unknown -2.015 no data
161 AT4G22470 AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] -2.013 -0.049
162 AT1G47510 AT1G47510 inositol polyphosphate 5-phosphatase 11 -2.007 no data
163 AT1G32190 AT1G32190 [alpha/beta-Hydrolases superfamily protein] -2.005 0.062
164 AT4G36820 AT4G36820 unknown -1.995 no data
165 AT1G76500 AT1G76500 AHL29, AT-hook motif nuclear-localized protein 29, SOB3, SUPPRESSOR OF PHYB-4#3 -1.993 0.030
166 AT3G47480 AT3G47480 [Calcium-binding EF-hand family protein] -1.993 -0.038
167 AT1G53541 AT1G53541 unknown -1.977 no data
168 AT1G76620 AT1G76620 unknown -1.973 -0.192
169 AT5G51470 AT5G51470 [Auxin-responsive GH3 family protein] -1.936 0.029