4.0:Information of module
root cap pGL2(root cap pGL2BRI1) 3h BL
In comparison with stele pSHR 3h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901698 response to nitrogen compound BP 1.500e-23
GO:0006820 anion transport BP 1.701e-19
GO:0015698 inorganic anion transport BP 3.982e-19
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 3.059e-19
GO:1901700 response to oxygen-containing compound BP 2.516e-16
GO:0050896 response to stimulus BP 1.035e-15
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root cap pGL2(root cap pGL2BRI1) 3h BL		 Log2 signal ratio
stele pSHR 3h BL
1 AT1G66600 AT1G66600 ABO3, ABA overly sensitive mutant 3, ATWRKY63, WRKY63, WRKY DNA-binding protein 63 5.853 1.048
2 AT4G11340 AT4G11340 [Disease resistance protein (TIR-NBS-LRR class) family] 4.736 -0.169
3 AT2G02010 AT2G02010 GAD4, glutamate decarboxylase 4 4.546 1.233
4 AT2G25410 AT2G25410 [RING/U-box superfamily protein] 4.137 2.652
5 AT3G01080 AT3G01080 ATWRKY58, WRKY DNA-BINDING PROTEIN 58, WRKY58, WRKY DNA-binding protein 58 4.054 1.511
6 AT4G21870 AT4G21870 [HSP20-like chaperones superfamily protein] 4.046 1.968
7 AT5G05390 AT5G05390 LAC12, laccase 12 4.015 -1.465
8 AT5G24220 AT5G24220 [Lipase class 3-related protein] 4.009 -0.169
9 AT5G45090 AT5G45090 AtPP2-A7, phloem protein 2-A7, PP2-A7, phloem protein 2-A7 3.961 1.298
10 AT1G33840 AT1G33840 unknown 3.935 1.695
11 AT1G57630 AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] 3.559 -0.169
12 AT1G44010 AT1G44010 unknown 3.543 0.744
13 AT5G25260 AT5G25260 [SPFH/Band 7/PHB domain-containing membrane-associated protein family] 3.524 -0.169
14 AT5G44050 AT5G44050 [MATE efflux family protein] 3.438 -0.163
15 AT3G03670 AT3G03670 [Peroxidase superfamily protein] 3.436 -0.703
16 AT4G04700 AT4G04700 CPK27, calcium-dependent protein kinase 27 3.384 0.200
17 AT4G01010 AT4G01010 ATCNGC13, CYCLIC NUCLEOTIDE-GATED CHANNEL 13, CNGC13, cyclic nucleotide-gated channel 13 3.381 0.999
18 AT5G48430 AT5G48430 [Eukaryotic aspartyl protease family protein] 3.369 2.512
19 AT4G13095 AT4G13095 LCR37, low-molecular-weight cysteine-rich 37 3.338 0.358
20 AT1G51913 AT1G51913 [LOCATED IN: endomembrane system] 3.303 1.867
21 AT5G22555 AT5G22555 unknown 3.271 -0.176
22 AT3G50480 AT3G50480 HR4, homolog of RPW8 4 3.267 2.144
23 AT1G26420 AT1G26420 [FAD-binding Berberine family protein] 3.247 0.256
24 AT4G13090 AT4G13090 XTH2, xyloglucan endotransglucosylase/hydrolase 2 3.233 2.988
25 AT1G22900 AT1G22900 [Disease resistance-responsive (dirigent-like protein) family protein] 3.185 3.193
26 AT3G50460 AT3G50460 HR2, homolog of RPW8 2 3.179 1.720
27 AT4G14630 AT4G14630 GLP9, germin-like protein 9 3.143 1.619
28 AT2G37810 AT2G37810 [Cysteine/Histidine-rich C1 domain family protein] 3.064 -0.169
29 AT5G54720 AT5G54720 [Ankyrin repeat family protein] 3.063 0.358
30 AT3G53770 AT3G53770 [late embryogenesis abundant 3 (LEA3) family protein] 3.057 -0.169
31 AT1G33813 AT1G33813 [copia-like retrotransposon family, has a 5.8e-39 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] 3.021 -0.169
32 AT4G00780 AT4G00780 [TRAF-like family protein] 3.011 -0.576
33 AT1G63570 AT1G63570 [Receptor-like protein kinase-related family protein] 2.990 -0.169
34 AT2G19190 AT2G19190 FRK1, FLG22-induced receptor-like kinase 1 2.975 1.001
35 AT1G66920 AT1G66920 [Protein kinase superfamily protein] 2.974 0.358
36 AT5G19880 AT5G19880 [Peroxidase superfamily protein] 2.964 -1.120
37 AT1G22890 AT1G22890 unknown 2.960 2.136
38 AT1G26250 AT1G26250 [Proline-rich extensin-like family protein] 2.924 1.433
39 AT1G51920 AT1G51920 unknown 2.912 2.380
40 AT1G65484 AT1G65484 unknown 2.906 1.511
41 AT1G05880 AT1G05880 ARI12, ARIADNE 12, ATARI12, ARABIDOPSIS ARIADNE 12 2.902 -0.169
42 AT4G23170 AT4G23170 CRK9, CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 9, EP1 2.882 -0.169
43 AT3G24400 AT3G24400 AtPERK2, proline-rich extensin-like receptor kinase 2, PERK2, proline-rich extensin-like receptor kinase 2 2.857 0.358
44 AT5G57220 AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 2.853 1.000
45 AT1G63560 AT1G63560 [Receptor-like protein kinase-related family protein] 2.845 1.047
46 AT1G32763 AT1G32763 [Cysteine-rich protein] 2.834 -0.169
47 AT1G63550 AT1G63550 [Receptor-like protein kinase-related family protein] 2.830 0.210
48 AT1G35230 AT1G35230 AGP5, arabinogalactan protein 5 2.801 -1.086
49 AT1G76220 AT1G76220 unknown -6.388 -1.416
50 AT4G08040 AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 -4.945 0.986
51 AT5G24110 AT5G24110 ATWRKY30, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY30, WRKY DNA-binding protein 30 -4.418 1.299
52 AT1G52342 AT1G52342 unknown -4.007 0.203
53 AT4G01680 AT4G01680 AtMYB55, myb domain protein 55, MYB55, myb domain protein 55 -3.378 -0.141
54 AT1G70720 AT1G70720 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -3.104 -0.277
55 AT1G07985 AT1G07985 [Expressed protein] -3.099 0.218
56 AT3G46613 AT3G46613 DVL15, DEVIL 15, RTFL4, ROTUNDIFOLIA like 4 -3.067 -0.169
57 AT4G31940 AT4G31940 CYP82C4, cytochrome P450, family 82, subfamily C, polypeptide 4 -3.049 -1.160
58 AT4G37310 AT4G37310 CYP81H1, cytochrome P450, family 81, subfamily H, polypeptide 1 -3.042 -0.038
59 AT5G57010 AT5G57010 [calmodulin-binding family protein] -3.018 -0.640
60 AT2G37640 AT2G37640 ATEXP3, EXPANSIN 3, ATEXPA3, ARABIDOPSIS THALIANA EXPANSIN A3, ATHEXP ALPHA 1.9, EXP3 -2.947 0.200
61 AT4G01670 AT4G01670 unknown -2.879 -0.034
62 AT5G27810 AT5G27810 [MADS-box transcription factor family protein] -2.817 -0.179
63 AT5G65300 AT5G65300 unknown -2.729 -0.562
64 AT2G30750 AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 -2.661 -0.431
65 AT4G39952 AT4G39952 [Pentatricopeptide repeat (PPR) superfamily protein] -2.623 -0.355
66 AT1G63720 AT1G63720 unknown -2.613 -0.975
67 AT5G57785 AT5G57785 unknown -2.583 -2.235
68 AT3G09280 AT3G09280 unknown -2.539 -1.337
69 AT3G59710 AT3G59710 [NAD(P)-binding Rossmann-fold superfamily protein] -2.511 -0.778
70 AT2G34490 AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 -2.430 -1.637
71 AT5G38020 AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -2.401 -1.963
72 AT3G25655 AT3G25655 IDL1, inflorescence deficient in abscission (IDA)-like 1 -2.398 -1.514
73 AT2G26870 AT2G26870 NPC2, non-specific phospholipase C2 -2.313 -0.482
74 AT5G17800 AT5G17800 AtMYB56, myb domain protein 56, MYB56, myb domain protein 56 -2.278 -1.178
75 AT1G18870 AT1G18870 ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ICS2, isochorismate synthase 2 -2.269 0.019
76 AT4G36780 AT4G36780 BEH2, BES1/BZR1 homolog 2 -2.244 -0.351
77 AT1G76790 AT1G76790 IGMT5, indole glucosinolate O-methyltransferase 5 -2.232 -0.948
78 AT5G38940 AT5G38940 [RmlC-like cupins superfamily protein] -2.203 -2.310
79 AT5G39050 AT5G39050 PMAT1, phenolic glucoside malonyltransferase 1 -2.180 -0.398
80 AT2G41240 AT2G41240 BHLH100, basic helix-loop-helix protein 100 -2.156 0.289
81 AT5G13080 AT5G13080 ATWRKY75, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY75, WRKY DNA-binding protein 75 -2.154 -0.178
82 AT1G55020 AT1G55020 ATLOX1, ARABIDOPSIS LIPOXYGENASE 1, LOX1, lipoxygenase 1 -2.123 0.320
83 AT1G58170 AT1G58170 [Disease resistance-responsive (dirigent-like protein) family protein] -2.119 -0.001
84 AT4G28703 AT4G28703 [RmlC-like cupins superfamily protein] -2.101 -0.681
85 AT5G20790 AT5G20790 unknown -2.096 -0.658
86 AT1G22160 AT1G22160 unknown -2.072 0.211
87 AT5G66080 AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -2.057 -2.816
88 AT5G38200 AT5G38200 [Class I glutamine amidotransferase-like superfamily protein] -2.030 0.360
89 AT1G76590 AT1G76590 [PLATZ transcription factor family protein] -2.025 0.016
90 AT3G18710 AT3G18710 ATPUB29, ARABIDOPSIS THALIANA PLANT U-BOX 29, PUB29, plant U-box 29 -2.017 -0.512
91 AT2G41312 AT2G41312 other RNA -1.992 -0.171
92 AT5G05880 AT5G05880 [UDP-Glycosyltransferase superfamily protein] -1.974 -0.563
93 AT1G51170 AT1G51170 AGC2-3, AGC2 kinase 3, UCN, UNICORN -1.958 0.224
94 AT1G21410 AT1G21410 SKP2A -1.952 -0.072
95 AT2G39710 AT2G39710 [Eukaryotic aspartyl protease family protein] -1.924 -0.349