4.0:Information of module
root cap pGL2(QC pSCRBRI1) 3h BL
In comparison with lateral root cap-columella pBRN2 3h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006820 anion transport BP 3.656e-28
GO:0071705 nitrogen compound transport BP 4.281e-27
GO:0006811 ion transport BP 9.823e-26
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 1.811e-18
GO:0042221 response to chemical BP 1.624e-16
GO:0010033 response to organic substance BP 2.175e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root cap pGL2(QC pSCRBRI1) 3h BL		 Log2 signal ratio
lateral root cap-columella pBRN2 3h BL
1 AT5G36925 AT5G36925 unknown 5.126 -0.520
2 AT4G37780 AT4G37780 ATMYB87, MYB87, myb domain protein 87 4.516 1.258
3 AT1G52690 AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 4.386 -0.864
4 AT4G03480 AT4G03480 [Ankyrin repeat family protein] 4.208 0.935
5 AT5G36920 AT5G36920 unknown 4.177 -0.496
6 AT4G18195 AT4G18195 ATPUP8, ARABIDOPSIS THALIANA PURINE PERMEASE 8, PUP8, purine permease 8 4.132 0.035
7 AT5G05390 AT5G05390 LAC12, laccase 12 4.007 -0.936
8 AT5G48430 AT5G48430 [Eukaryotic aspartyl protease family protein] 3.963 1.430
9 AT4G14365 AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 3.903 -0.192
10 AT4G23170 AT4G23170 CRK9, CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 9, EP1 3.756 4.713
11 AT2G26150 AT2G26150 ATHSFA2, heat shock transcription factor A2, HSFA2, heat shock transcription factor A2 3.404 1.435
12 AT1G51913 AT1G51913 [LOCATED IN: endomembrane system] 3.289 1.125
13 AT1G22890 AT1G22890 unknown 3.269 2.696
14 AT4G11480 AT4G11480 CRK32, cysteine-rich RLK (RECEPTOR-like protein kinase) 32 3.173 0.035
15 AT1G21320 AT1G21320 [nucleotide binding] 3.146 0.442
16 AT5G37490 AT5G37490 [ARM repeat superfamily protein] 3.045 1.030
17 AT2G02010 AT2G02010 GAD4, glutamate decarboxylase 4 3.036 0.566
18 AT1G74710 AT1G74710 ATICS1, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, EDS16, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ICS1, ISOCHORISMATE SYNTHASE 1, SID2, SALICYLIC ACID INDUCTION DEFICIENT 2 3.011 1.377
19 AT1G22900 AT1G22900 [Disease resistance-responsive (dirigent-like protein) family protein] 2.868 2.371
20 AT2G31540 AT2G31540 [GDSL-like Lipase/Acylhydrolase superfamily protein] 2.681 1.102
21 AT4G14450 AT4G14450 unknown 2.665 -1.625
22 AT1G49000 AT1G49000 unknown 2.636 0.189
23 AT5G20230 AT5G20230 ATBCB, blue-copper-binding protein, BCB, BLUE COPPER BINDING PROTEIN, BCB, blue-copper-binding protein, SAG14, SENESCENCE ASSOCIATED GENE 14 2.527 1.467
24 AT1G14540 AT1G14540 PER4, peroxidase 4 2.444 1.240
25 AT4G04700 AT4G04700 CPK27, calcium-dependent protein kinase 27 2.382 0.549
26 AT4G15417 AT4G15417 ATRTL1, RNAse II-like 1, RTL1, RNAse II-like 1 2.348 1.125
27 AT4G21870 AT4G21870 [HSP20-like chaperones superfamily protein] 2.307 2.774
28 AT3G50470 AT3G50470 HR3, homolog of RPW8 3, MLA10, INTRACELLULAR MILDEW A 10 2.264 0.796
29 AT5G64750 AT5G64750 ABR1, ABA REPRESSOR1 2.221 0.740
30 AT1G07620 AT1G07620 ATOBGM, TRM32, TON1 Recruiting Motif 32 2.205 1.472
31 AT5G52640 AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 2.171 1.017
32 AT5G65300 AT5G65300 unknown -2.631 -0.700
33 AT1G63720 AT1G63720 unknown -2.303 -1.253
34 AT1G77760 AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 -2.042 -1.042
35 AT3G49570 AT3G49570 LSU3, RESPONSE TO LOW SULFUR 3 -1.963 -1.072
36 AT4G01680 AT4G01680 AtMYB55, myb domain protein 55, MYB55, myb domain protein 55 -1.925 -1.660
37 AT3G15030 AT3G15030 MEE35, maternal effect embryo arrest 35, TCP4, TCP family transcription factor 4 -1.920 -0.108
38 AT2G25450 AT2G25450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -1.872 -0.664
39 AT3G25655 AT3G25655 IDL1, inflorescence deficient in abscission (IDA)-like 1 -1.856 -1.640
40 AT5G17800 AT5G17800 AtMYB56, myb domain protein 56, MYB56, myb domain protein 56 -1.855 -1.402
41 AT3G49580 AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 -1.774 -0.769
42 AT2G25090 AT2G25090 AtCIPK16, CIPK16, CBL-interacting protein kinase 16, SnRK3.18, SNF1-RELATED PROTEIN KINASE 3.18 -1.764 -0.041
43 AT5G38200 AT5G38200 [Class I glutamine amidotransferase-like superfamily protein] -1.692 -2.218
44 AT3G50660 AT3G50660 AtDWF4, CLM, CLOMAZONE-RESISTANT, CYP90B1, CYTOCHROME P450 90B1, DWF4, DWARF 4, PSC1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, SAV1, SHADE AVOIDANCE 1, SNP2, SUPPRESSOR OF NPH4 2 -1.629 -1.050
45 AT4G36220 AT4G36220 CYP84A1, CYTOCHROME P450 84A1, FAH1, ferulic acid 5-hydroxylase 1 -1.617 -0.265
46 AT5G65340 AT5G65340 unknown -1.572 -0.612
47 AT4G30270 AT4G30270 MERI-5, MERISTEM 5, MERI5B, meristem-5, SEN4, SENESCENCE 4, XTH24, xyloglucan endotransglucosylase/hydrolase 24 -1.560 -0.563
48 AT4G27410 AT4G27410 ANAC072, Arabidopsis NAC domain containing protein 72, RD26, RESPONSIVE TO DESICCATION 26 -1.534 -0.390
49 AT2G35200 AT2G35200 unknown -1.510 -0.418
50 AT5G03390 AT5G03390 unknown -1.499 -2.394
51 AT3G23570 AT3G23570 [alpha/beta-Hydrolases superfamily protein] -1.474 -0.900
52 AT5G14200 AT5G14200 ATIMD1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, IMD1, isopropylmalate dehydrogenase 1 -1.452 -1.895
53 AT2G42430 AT2G42430 ASL18, ASYMMETRIC LEAVES2-LIKE 18, LBD16, lateral organ boundaries-domain 16 -1.441 -0.036
54 AT2G26370 AT2G26370 [MD-2-related lipid recognition domain-containing protein] -1.422 -0.008
55 AT4G38770 AT4G38770 ATPRP4, ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 4, PRP4, proline-rich protein 4 -1.410 -0.421
56 AT2G23620 AT2G23620 ATMES1, ARABIDOPSIS THALIANA METHYL ESTERASE 1, MES1, methyl esterase 1 -1.383 -0.565
57 AT3G13380 AT3G13380 BRL3, BRI1-like 3 -1.355 -0.405
58 AT5G66080 AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -1.340 -3.166
59 AT1G51170 AT1G51170 AGC2-3, AGC2 kinase 3, UCN, UNICORN -1.319 -0.702
60 AT3G54600 AT3G54600 DJ-1f, DJ1F -1.313 -1.449
61 AT1G14960 AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -1.288 -0.685