4.0:Information of module
tga2 tga5 tga6 ctrl
In comparison with Light 3day hml help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001101 response to acid chemical BP 3.171e-33
GO:1901700 response to oxygen-containing compound BP 5.310e-32
GO:0010413 glucuronoxylan metabolic process BP 2.045e-28
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009607 response to biotic stimulus BP 5.094e-46
GO:0043207 response to external biotic stimulus BP 2.281e-45
GO:0051707 response to other organism BP 2.281e-45
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
tga2 tga5 tga6 ctrl		 Log2 signal ratio
Light 3day hml
1 AT5G44430 AT5G44430 PDF1.2c, plant defensin 1.2C 6.072 -1.094
2 AT3G01345 AT3G01345 [Expressed protein] 5.748 -0.177
3 AT1G53480 AT1G53480 ATMRD1, ARABIDOPSIS MTO 1 RESPONDING DOWN 1, MRD1, MTO 1 RESPONDING DOWN 1 5.164 -0.173
4 AT2G26020 AT2G26020 PDF1.2b, plant defensin 1.2b 4.770 -0.639
5 AT1G72260 AT1G72260 THI2.1, thionin 2.1, THI2.1.1 4.098 1.283
6 AT3G60140 AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 3.745 4.781
7 AT2G39030 AT2G39030 NATA1, N-acetyltransferase activity 1 3.730 3.968
8 AT1G27565 AT1G27565 unknown 3.718 -0.173
9 AT4G21830 AT4G21830 ATMSRB7, methionine sulfoxide reductase B7, MSRB7, methionine sulfoxide reductase B7 3.416 -0.173
10 AT4G16590 AT4G16590 ATCSLA01, cellulose synthase-like A01, ATCSLA1, CELLULOSE SYNTHASE-LIKE A1, CSLA01, CSLA01, cellulose synthase-like A01 3.389 3.269
11 AT5G24780 AT5G24780 ATVSP1, VSP1, vegetative storage protein 1 3.175 3.858
12 AT5G24770 AT5G24770 ATVSP2, VSP2, vegetative storage protein 2 3.017 2.663
13 AT5G11940 AT5G11940 [Subtilase family protein] 3.011 -0.173
14 AT1G54020 AT1G54020 [GDSL-like Lipase/Acylhydrolase superfamily protein] 2.955 1.283
15 AT1G14250 AT1G14250 [GDA1/CD39 nucleoside phosphatase family protein] 2.802 0.232
16 AT1G52040 AT1G52040 ATMBP, MBP1, myrosinase-binding protein 1 2.686 2.633
17 AT1G73325 AT1G73325 [Kunitz family trypsin and protease inhibitor protein] 2.578 1.038
18 AT4G16260 AT4G16260 [Glycosyl hydrolase superfamily protein] 2.524 -2.410
19 AT3G09220 AT3G09220 LAC7, laccase 7 2.482 -0.173
20 AT4G15210 AT4G15210 AT-BETA-AMY, ATBETA-AMY, ARABIDOPSIS THALIANA BETA-AMYLASE, BAM5, beta-amylase 5, BMY1, RAM1, REDUCED BETA AMYLASE 1 2.469 2.366
21 AT1G80160 AT1G80160 GLYI7, glyoxylase I 7 2.377 4.494
22 AT5G05340 AT5G05340 PRX52, peroxidase 52 2.356 1.938
23 AT3G55970 AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 2.295 4.140
24 AT2G30830 AT2G30830 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 2.281 0.354
25 AT1G67105 AT1G67105 other RNA 2.237 0.152
26 AT4G17220 AT4G17220 ATMAP70-5, microtubule-associated proteins 70-5, MAP70-5, microtubule-associated proteins 70-5 2.190 -0.944
27 AT4G13450 AT4G13450 [Adenine nucleotide alpha hydrolases-like superfamily protein] 2.166 -0.733
28 AT2G34600 AT2G34600 JAZ7, jasmonate-zim-domain protein 7, TIFY5B 2.136 -1.638
29 AT2G16367 AT2G16367 2.109 1.425
30 AT4G28940 AT4G28940 [Phosphorylase superfamily protein] 2.069 -0.173
31 AT5G03545 AT5G03545 AT4, ATIPS2, INDUCED BY PI STARVATION 2 2.055 -1.558
32 AT1G24070 AT1G24070 ATCSLA10, cellulose synthase-like A10, CSLA10, CELLULOSE SYNTHASE LIKE A10, CSLA10, cellulose synthase-like A10 2.044 0.640
33 AT1G73260 AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 2.033 3.297
34 AT2G39330 AT2G39330 JAL23, jacalin-related lectin 23 2.025 -0.151
35 AT4G37410 AT4G37410 CYP81F4, cytochrome P450, family 81, subfamily F, polypeptide 4 2.022 -0.173
36 AT5G15960 AT5G15960 KIN1 1.951 1.747
37 AT5G19470 AT5G19470 atnudt24, nudix hydrolase homolog 24, NUDT24, nudix hydrolase homolog 24, NUDX24, nudix hydrolase homolog 24 1.899 0.354
38 AT4G17470 AT4G17470 [alpha/beta-Hydrolases superfamily protein] 1.888 2.255
39 AT5G40790 AT5G40790 unknown 1.841 3.004
40 AT1G65890 AT1G65890 AAE12, acyl activating enzyme 12 1.839 -0.173
41 AT3G28220 AT3G28220 [TRAF-like family protein] 1.825 0.973
42 AT4G29930 AT4G29930 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 1.789 -0.173
43 AT4G18440 AT4G18440 [L-Aspartase-like family protein] 1.786 0.686
44 AT3G30122 AT3G30122 [expressed protein] 1.774 0.510
45 AT2G47480 AT2G47480 unknown 1.760 -0.002
46 AT5G06950 AT5G06950 AHBP-1B, TGA2, TGACG sequence-specific binding protein 2 -6.959 0.368
47 AT1G67550 AT1G67550 URE, urease -6.548 -0.128
48 AT3G12250 AT3G12250 BZIP45, TGA6, TGACG motif-binding factor 6 -6.323 0.096
49 AT2G05380 AT2G05380 GRP3S, glycine-rich protein 3 short isoform -6.115 -0.859
50 AT5G06940 AT5G06940 [Leucine-rich repeat receptor-like protein kinase family protein] -6.063 0.034
51 AT4G17030 AT4G17030 AT-EXPR, ATEXLB1, expansin-like B1, ATEXPR1, ATHEXP BETA 3.1, EXLB1, expansin-like B1, EXPR -5.885 -1.028
52 AT5G06960 AT5G06960 OBF5, OCS-element binding factor 5, TGA5, TGACG MOTIF-BINDING FACTOR 5 -5.834 -0.292
53 AT2G43120 AT2G43120 [RmlC-like cupins superfamily protein] -5.459 -0.116
54 AT3G42658 AT3G42658 SADHU3-2, sadhu non-coding retrotransposon 3-2 -5.132 2.646
55 AT3G05170 AT3G05170 [Phosphoglycerate mutase family protein] -5.075 0.182
56 AT5G27345 AT5G27345 [Mutator-like transposase family, has a 4.0e-48 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -5.075 -0.708
57 AT4G25434 AT4G25434 ATNUDT10, nudix hydrolase homolog 10, NUDT10, nudix hydrolase homolog 10 -4.973 -0.593
58 AT5G16980 AT5G16980 [Zinc-binding dehydrogenase family protein] -4.488 1.142
59 AT3G28830 AT3G28830 unknown -3.866 -2.423
60 AT3G28740 AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 -3.816 1.578
61 AT3G22231 AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 -3.810 -0.747
62 AT3G28915 AT3G28915 [non-LTR retrotransposon family (LINE), has a 7.3e-24 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)] -3.751 1.641
63 AT4G13180 AT4G13180 [NAD(P)-binding Rossmann-fold superfamily protein] -3.726 -0.190
64 AT3G11340 AT3G11340 UGT76B1, UDP-dependent glycosyltransferase 76B1 -3.680 -1.957
65 AT4G09770 AT4G09770 [TRAF-like family protein] -3.370 -1.846
66 AT5G05960 AT5G05960 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -3.262 -1.588
67 AT2G29420 AT2G29420 ATGSTU7, glutathione S-transferase tau 7, GST25, GLUTATHIONE S-TRANSFERASE 25, GSTU7, glutathione S-transferase tau 7 -3.256 0.364
68 AT1G14880 AT1G14880 AtPCR1, PCR1, PLANT CADMIUM RESISTANCE 1 -3.235 -2.018
69 AT4G34138 AT4G34138 UGT73B1, UDP-glucosyl transferase 73B1 -3.213 0.316
70 AT1G77450 AT1G77450 anac032, NAC domain containing protein 32, NAC032, NAC domain containing protein 32 -3.186 -0.175
71 AT1G20160 AT1G20160 ATSBT5.2 -3.085 -1.069
72 AT2G44300 AT2G44300 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -2.985 -0.413
73 AT3G53980 AT3G53980 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -2.951 -0.819
74 AT3G28510 AT3G28510 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -2.942 -1.573
75 AT1G33950 AT1G33950 [Avirulence induced gene (AIG1) family protein] -2.879 -1.935
76 AT2G01422 AT2G01422 -2.850 4.176
77 AT1G79400 AT1G79400 ATCHX2, cation/H+ exchanger 2, CHX2, cation/H+ exchanger 2 -2.816 -0.707
78 AT2G29490 AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 -2.773 -0.485
79 AT1G50590 AT1G50590 [RmlC-like cupins superfamily protein] -2.695 0.392
80 AT3G17180 AT3G17180 scpl33, serine carboxypeptidase-like 33 -2.646 -0.235
81 AT3G30720 AT3G30720 QQS, QUA-QUINE STARCH -2.638 -0.022
82 AT3G28840 AT3G28840 unknown -2.500 -1.393
83 AT4G30460 AT4G30460 [glycine-rich protein] -2.462 -0.683
84 AT4G33550 AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -2.428 -1.772
85 AT1G33840 AT1G33840 unknown -2.396 -2.531
86 AT3G57240 AT3G57240 AtBG3, BG3, beta-1,3-glucanase 3 -2.368 -2.404
87 AT1G66830 AT1G66830 [Leucine-rich repeat protein kinase family protein] -2.358 -0.119
88 AT1G19960 AT1G19960 unknown -2.350 0.638
89 AT4G15760 AT4G15760 MO1, monooxygenase 1 -2.349 0.183