4.0:Information of module
tga2 tga5 tga6 ctrl
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001101 response to acid chemical BP 3.171e-33
GO:1901700 response to oxygen-containing compound BP 5.310e-32
GO:0010413 glucuronoxylan metabolic process BP 2.045e-28
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009607 response to biotic stimulus BP 5.094e-46
GO:0043207 response to external biotic stimulus BP 2.281e-45
GO:0051707 response to other organism BP 2.281e-45
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
tga2 tga5 tga6 ctrl		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 AT5G44430 AT5G44430 PDF1.2c, plant defensin 1.2C 6.072 no data
2 AT3G01345 AT3G01345 [Expressed protein] 5.748 no data
3 AT1G53480 AT1G53480 ATMRD1, ARABIDOPSIS MTO 1 RESPONDING DOWN 1, MRD1, MTO 1 RESPONDING DOWN 1 5.164 no data
4 AT2G26020 AT2G26020 PDF1.2b, plant defensin 1.2b 4.770 0.132
5 AT1G72260 AT1G72260 THI2.1, thionin 2.1, THI2.1.1 4.098 0.010
6 AT3G60140 AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 3.745 -0.109
7 AT2G39030 AT2G39030 NATA1, N-acetyltransferase activity 1 3.730 -0.004
8 AT1G27565 AT1G27565 unknown 3.718 no data
9 AT4G21830 AT4G21830 ATMSRB7, methionine sulfoxide reductase B7, MSRB7, methionine sulfoxide reductase B7 3.416 no data
10 AT4G16590 AT4G16590 ATCSLA01, cellulose synthase-like A01, ATCSLA1, CELLULOSE SYNTHASE-LIKE A1, CSLA01, CSLA01, cellulose synthase-like A01 3.389 0.008
11 AT5G24780 AT5G24780 ATVSP1, VSP1, vegetative storage protein 1 3.175 no data
12 AT5G24770 AT5G24770 ATVSP2, VSP2, vegetative storage protein 2 3.017 no data
13 AT5G11940 AT5G11940 [Subtilase family protein] 3.011 -0.042
14 AT1G54020 AT1G54020 [GDSL-like Lipase/Acylhydrolase superfamily protein] 2.955 0.439
15 AT1G14250 AT1G14250 [GDA1/CD39 nucleoside phosphatase family protein] 2.802 no data
16 AT1G52040 AT1G52040 ATMBP, MBP1, myrosinase-binding protein 1 2.686 no data
17 AT1G73325 AT1G73325 [Kunitz family trypsin and protease inhibitor protein] 2.578 no data
18 AT4G16260 AT4G16260 [Glycosyl hydrolase superfamily protein] 2.524 -0.300
19 AT3G09220 AT3G09220 LAC7, laccase 7 2.482 -0.082
20 AT4G15210 AT4G15210 AT-BETA-AMY, ATBETA-AMY, ARABIDOPSIS THALIANA BETA-AMYLASE, BAM5, beta-amylase 5, BMY1, RAM1, REDUCED BETA AMYLASE 1 2.469 -0.038
21 AT1G80160 AT1G80160 GLYI7, glyoxylase I 7 2.377 0.046
22 AT5G05340 AT5G05340 PRX52, peroxidase 52 2.356 0.029
23 AT3G55970 AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 2.295 -0.097
24 AT2G30830 AT2G30830 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 2.281 -0.138
25 AT1G67105 AT1G67105 other RNA 2.237 no data
26 AT4G17220 AT4G17220 ATMAP70-5, microtubule-associated proteins 70-5, MAP70-5, microtubule-associated proteins 70-5 2.190 0.092
27 AT4G13450 AT4G13450 [Adenine nucleotide alpha hydrolases-like superfamily protein] 2.166 -0.083
28 AT2G34600 AT2G34600 JAZ7, jasmonate-zim-domain protein 7, TIFY5B 2.136 -0.070
29 AT2G16367 AT2G16367 2.109 no data
30 AT4G28940 AT4G28940 [Phosphorylase superfamily protein] 2.069 0.039
31 AT5G03545 AT5G03545 AT4, ATIPS2, INDUCED BY PI STARVATION 2 2.055 no data
32 AT1G24070 AT1G24070 ATCSLA10, cellulose synthase-like A10, CSLA10, CELLULOSE SYNTHASE LIKE A10, CSLA10, cellulose synthase-like A10 2.044 0.036
33 AT1G73260 AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 2.033 -0.011
34 AT2G39330 AT2G39330 JAL23, jacalin-related lectin 23 2.025 -0.015
35 AT4G37410 AT4G37410 CYP81F4, cytochrome P450, family 81, subfamily F, polypeptide 4 2.022 0.008
36 AT5G15960 AT5G15960 KIN1 1.951 no data
37 AT5G19470 AT5G19470 atnudt24, nudix hydrolase homolog 24, NUDT24, nudix hydrolase homolog 24, NUDX24, nudix hydrolase homolog 24 1.899 no data
38 AT4G17470 AT4G17470 [alpha/beta-Hydrolases superfamily protein] 1.888 -0.018
39 AT5G40790 AT5G40790 unknown 1.841 no data
40 AT1G65890 AT1G65890 AAE12, acyl activating enzyme 12 1.839 -0.015
41 AT3G28220 AT3G28220 [TRAF-like family protein] 1.825 0.009
42 AT4G29930 AT4G29930 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 1.789 no data
43 AT4G18440 AT4G18440 [L-Aspartase-like family protein] 1.786 no data
44 AT3G30122 AT3G30122 [expressed protein] 1.774 no data
45 AT2G47480 AT2G47480 unknown 1.760 no data
46 AT5G06950 AT5G06950 AHBP-1B, TGA2, TGACG sequence-specific binding protein 2 -6.959 -0.005
47 AT1G67550 AT1G67550 URE, urease -6.548 0.092
48 AT3G12250 AT3G12250 BZIP45, TGA6, TGACG motif-binding factor 6 -6.323 0.131
49 AT2G05380 AT2G05380 GRP3S, glycine-rich protein 3 short isoform -6.115 -0.158
50 AT5G06940 AT5G06940 [Leucine-rich repeat receptor-like protein kinase family protein] -6.063 -0.057
51 AT4G17030 AT4G17030 AT-EXPR, ATEXLB1, expansin-like B1, ATEXPR1, ATHEXP BETA 3.1, EXLB1, expansin-like B1, EXPR -5.885 -0.158
52 AT5G06960 AT5G06960 OBF5, OCS-element binding factor 5, TGA5, TGACG MOTIF-BINDING FACTOR 5 -5.834 -0.044
53 AT2G43120 AT2G43120 [RmlC-like cupins superfamily protein] -5.459 no data
54 AT3G42658 AT3G42658 SADHU3-2, sadhu non-coding retrotransposon 3-2 -5.132 no data
55 AT3G05170 AT3G05170 [Phosphoglycerate mutase family protein] -5.075 -0.129
56 AT5G27345 AT5G27345 [Mutator-like transposase family, has a 4.0e-48 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -5.075 no data
57 AT4G25434 AT4G25434 ATNUDT10, nudix hydrolase homolog 10, NUDT10, nudix hydrolase homolog 10 -4.973 -0.121
58 AT5G16980 AT5G16980 [Zinc-binding dehydrogenase family protein] -4.488 0.044
59 AT3G28830 AT3G28830 unknown -3.866 -0.126
60 AT3G28740 AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 -3.816 0.147
61 AT3G22231 AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 -3.810 0.069
62 AT3G28915 AT3G28915 [non-LTR retrotransposon family (LINE), has a 7.3e-24 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)] -3.751 no data
63 AT4G13180 AT4G13180 [NAD(P)-binding Rossmann-fold superfamily protein] -3.726 -0.057
64 AT3G11340 AT3G11340 UGT76B1, UDP-dependent glycosyltransferase 76B1 -3.680 0.032
65 AT4G09770 AT4G09770 [TRAF-like family protein] -3.370 no data
66 AT5G05960 AT5G05960 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -3.262 0.096
67 AT2G29420 AT2G29420 ATGSTU7, glutathione S-transferase tau 7, GST25, GLUTATHIONE S-TRANSFERASE 25, GSTU7, glutathione S-transferase tau 7 -3.256 -0.056
68 AT1G14880 AT1G14880 AtPCR1, PCR1, PLANT CADMIUM RESISTANCE 1 -3.235 no data
69 AT4G34138 AT4G34138 UGT73B1, UDP-glucosyl transferase 73B1 -3.213 -0.166
70 AT1G77450 AT1G77450 anac032, NAC domain containing protein 32, NAC032, NAC domain containing protein 32 -3.186 -0.132
71 AT1G20160 AT1G20160 ATSBT5.2 -3.085 -0.031
72 AT2G44300 AT2G44300 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -2.985 -0.103
73 AT3G53980 AT3G53980 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -2.951 0.393
74 AT3G28510 AT3G28510 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -2.942 -0.109
75 AT1G33950 AT1G33950 [Avirulence induced gene (AIG1) family protein] -2.879 0.383
76 AT2G01422 AT2G01422 -2.850 no data
77 AT1G79400 AT1G79400 ATCHX2, cation/H+ exchanger 2, CHX2, cation/H+ exchanger 2 -2.816 0.003
78 AT2G29490 AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 -2.773 0.072
79 AT1G50590 AT1G50590 [RmlC-like cupins superfamily protein] -2.695 -0.021
80 AT3G17180 AT3G17180 scpl33, serine carboxypeptidase-like 33 -2.646 0.032
81 AT3G30720 AT3G30720 QQS, QUA-QUINE STARCH -2.638 -0.031
82 AT3G28840 AT3G28840 unknown -2.500 0.034
83 AT4G30460 AT4G30460 [glycine-rich protein] -2.462 0.034
84 AT4G33550 AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -2.428 0.111
85 AT1G33840 AT1G33840 unknown -2.396 0.098
86 AT3G57240 AT3G57240 AtBG3, BG3, beta-1,3-glucanase 3 -2.368 -0.134
87 AT1G66830 AT1G66830 [Leucine-rich repeat protein kinase family protein] -2.358 0.036
88 AT1G19960 AT1G19960 unknown -2.350 0.019
89 AT4G15760 AT4G15760 MO1, monooxygenase 1 -2.349 no data