4.0:Information of module
nrpe1
In comparison with brat1 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009627 systemic acquired resistance BP 9.880e-06
GO:0009697 salicylic acid biosynthetic process BP 3.180e-05
GO:0046189 phenol-containing compound biosynthetic ... BP 3.713e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0055114 oxidation-reduction process BP 2.357e-04
GO:0006281 DNA repair BP 2.066e-02
GO:0006974 cellular response to DNA damage stimulus BP 3.129e-02
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
nrpe1		 Log2 signal ratio
brat1
1 AT3G32240 AT3G32240 [CACTA-like transposase family (Ptta/En/Spm), has a 4.9e-90 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 10.661 -0.296
2 AT5G27845 AT5G27845 [non-LTR retrotransposon family (LINE), has a 6.6e-32 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)] 9.083 2.875
3 AT1G33840 AT1G33840 unknown 8.170 0.918
4 AT2G01422 AT2G01422 7.765 2.348
5 AT5G41830 AT5G41830 [RNI-like superfamily protein] 7.477 -0.252
6 AT3G28899 AT3G28899 unknown 7.254 -0.374
7 AT5G35205 AT5G35205 [non-LTR retrotransposon family (LINE), has a 1.1e-36 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)] 6.791 -0.000
8 AT3G32195 AT3G32195 [gypsy-like retrotransposon family, has a 8.8e-102 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)] 6.662 -0.001
9 AT4G10580 AT4G10580 [gypsy-like retrotransposon family, has a 1.1e-306 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)] 6.556 1.519
10 AT2G13860 AT2G13860 [gypsy-like retrotransposon family, has a 2.4e-275 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)] 6.378 -0.000
11 AT4G01975 AT4G01975 [pseudogene] 6.288 0.945
12 AT5G35207 AT5G35207 [pseudogene] 6.069 -0.000
13 AT1G28000 AT1G28000 [Pentatricopeptide repeat (PPR) superfamily protein] 5.926 0.374
14 AT3G42658 AT3G42658 SADHU3-2, sadhu non-coding retrotransposon 3-2 -4.905 -4.992
15 AT3G30720 AT3G30720 QQS, QUA-QUINE STARCH -4.770 -3.376
16 AT5G35057 AT5G35057 [gypsy-like retrotransposon family (Athila), has a 8.7e-292 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] -4.464 -4.551
17 AT3G06437 AT3G06437 [pseudogene] -4.256 -3.954
18 AT2G15040 AT2G15040 AtRLP18, receptor like protein 18, RLP18, receptor like protein 18 -3.814 -0.897
19 AT5G35052 AT5G35052 [copia-like retrotransposon family, has a 3.1e-94 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays)] -3.705 -3.791
20 AT2G06002 AT2G06002 other RNA -3.679 -0.089
21 AT2G36490 AT2G36490 AtROS1, DML1, demeter-like 1, ROS1, REPRESSOR OF SILENCING1 -2.883 0.407
22 AT2G18600 AT2G18600 [Ubiquitin-conjugating enzyme family protein] -2.727 -0.108
23 AT2G15042 AT2G15042 [Leucine-rich repeat (LRR) family protein] -2.527 -0.531
24 AT4G08115 AT4G08115 [gypsy-like retrotransposon family, has a 7.2e-05 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -2.417 -0.528
25 AT1G49790 AT1G49790 [F-box associated ubiquitination effector family protein] -2.228 -0.373