4.0:Information of module
Col-0 DEX Shade
In comparison with Dark 1day hml help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009725 response to hormone BP 5.364e-35
GO:0009719 response to endogenous stimulus BP 3.897e-34
GO:0010033 response to organic substance BP 3.738e-28
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 2.811e-39
GO:0009628 response to abiotic stimulus BP 2.111e-36
GO:1901700 response to oxygen-containing compound BP 8.257e-29
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 DEX Shade		 Log2 signal ratio
Dark 1day hml
1 AT4G27150 AT4G27150 AT2S2, SESA2, seed storage albumin 2 8.902 -0.175
2 AT4G27160 AT4G27160 AT2S3, SESA3, seed storage albumin 3 8.699 -0.175
3 AT4G27140 AT4G27140 AT2S1, SESA1, seed storage albumin 1 8.564 -0.175
4 AT4G27170 AT4G27170 AT2S4, SESA4, seed storage albumin 4 7.696 -0.175
5 AT1G03880 AT1G03880 CRB, CRUCIFERIN B, CRU2, cruciferin 2 7.544 -0.175
6 AT4G28520 AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 7.016 -0.175
7 AT1G47540 AT1G47540 [Scorpion toxin-like knottin superfamily protein] 6.964 -0.175
8 AT4G25140 AT4G25140 OLE1, OLEOSIN 1, OLEO1, oleosin 1 5.017 -0.175
9 AT4G31380 AT4G31380 FLP1, FPF1-like protein 1 4.955 6.116
10 AT5G54740 AT5G54740 SESA5, seed storage albumin 5 4.901 -0.175
11 AT2G05580 AT2G05580 [Glycine-rich protein family] 4.756 -0.175
12 AT1G04180 AT1G04180 YUC9, YUCCA 9 4.447 2.813
13 AT2G15010 AT2G15010 [Plant thionin] 4.417 -0.175
14 AT4G26740 AT4G26740 AtCLO1, ATPXG1, ARABIDOPSIS THALIANA PEROXYGENASE 1, ATS1, seed gene 1, CLO1, CALEOSIN1 4.337 -0.175
15 AT2G44910 AT2G44910 ATHB-4, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, ATHB4, homeobox-leucine zipper protein 4, HB4, homeobox-leucine zipper protein 4 3.537 0.162
16 AT3G21330 AT3G21330 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 3.429 4.213
17 AT4G32280 AT4G32280 IAA29, indole-3-acetic acid inducible 29 3.028 3.262
18 AT2G42870 AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 2.943 1.665
19 ATCG00290 ATCG00290 TRNS.2 2.928 -0.538
20 AT3G43850 AT3G43850 unknown 2.754 5.059
21 AT4G16780 AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 2.735 2.867
22 AT3G03830 AT3G03830 SAUR28, SMALL AUXIN UP RNA 28 2.710 -1.667
23 AT3G62950 AT3G62950 [Thioredoxin superfamily protein] 2.647 1.286
24 AT5G65800 AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 2.596 1.500
25 AT4G35770 AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 2.588 8.089
26 AT3G22961 AT3G22961 [Paired amphipathic helix (PAH2) superfamily protein] 2.500 4.460
27 AT2G18700 AT2G18700 ATTPS11, trehalose phosphatase/synthase 11, ATTPSB, TPS11, trehalose phosphatase/synthase 11, TPS11, TREHALOSE-6-PHOSPHATE SYNTHASE 11 2.500 2.456
28 AT3G50800 AT3G50800 unknown 2.490 -3.214
29 AT4G27450 AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] 2.469 3.476
30 AT5G18050 AT5G18050 SAUR22, SMALL AUXIN UP RNA 22 2.460 2.053
31 AT5G44260 AT5G44260 AtTZF5, TZF5, Tandem CCCH Zinc Finger protein 5 2.448 2.763
32 AT5G18010 AT5G18010 SAUR19, small auxin up RNA 19 2.400 -0.041
33 AT3G21320 AT3G21320 unknown 2.364 3.656
34 AT5G12050 AT5G12050 unknown 2.329 1.324
35 AT4G37770 AT4G37770 ACS8, 1-amino-cyclopropane-1-carboxylate synthase 8 2.321 3.191
36 AT3G29370 AT3G29370 P1R3, P1R3 2.257 2.257
37 AT2G46970 AT2G46970 PIL1, phytochrome interacting factor 3-like 1 2.154 1.629
38 AT1G26240 AT1G26240 [Proline-rich extensin-like family protein] 2.121 -0.175
39 AT5G22920 AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] 2.118 3.588
40 AT3G47340 AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 2.117 7.086
41 AT1G02620 AT1G02620 [Ras-related small GTP-binding family protein] 2.116 5.421
42 AT1G02660 AT1G02660 [alpha/beta-Hydrolases superfamily protein] 2.112 3.118
43 AT4G16000 AT4G16000 unknown 2.107 1.084
44 ATCG00350 ATCG00350 PSAA 2.098 1.294
45 AT1G02640 AT1G02640 ATBXL2, BETA-XYLOSIDASE 2, BXL2, beta-xylosidase 2 2.091 -0.946
46 AT4G28720 AT4G28720 YUC8, YUCCA 8 2.090 1.538
47 AT4G34770 AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 2.083 -0.573
48 AT5G25640 AT5G25640 [Rhomboid-related intramembrane serine protease family protein] 2.068 -1.351
49 AT1G02610 AT1G02610 [RING/FYVE/PHD zinc finger superfamily protein] 2.056 1.885
50 AT5G43890 AT5G43890 SUPER1, SUPPRESSOR OF ER 1, YUC5, YUCCA5 2.042 -0.436
51 AT3G62550 AT3G62550 [Adenine nucleotide alpha hydrolases-like superfamily protein] 2.038 4.384
52 AT2G23270 AT2G23270 unknown 2.012 -1.647
53 AT3G48360 AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 2.007 3.083
54 AT5G62280 AT5G62280 unknown 2.003 1.585
55 AT3G15450 AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 1.998 5.173
56 AT5G47370 AT5G47370 HAT2 1.986 2.498
57 AT5G39860 AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 1.983 -0.531
58 AT2G18010 AT2G18010 SAUR10, SMALL AUXIN UPREGULATED RNA 10 1.961 -2.225
59 ATCG00720 ATCG00720 PETB, photosynthetic electron transfer B 1.927 1.321
60 AT5G46240 AT5G46240 AtKAT1, KAT1, potassium channel in Arabidopsis thaliana 1 1.921 -0.023
61 AT4G26288 AT4G26288 unknown 1.896 4.773
62 AT1G49130 AT1G49130 BBX17, B-box domain protein 17 1.884 3.401
63 AT5G07010 AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 1.881 5.944
64 AT4G28085 AT4G28085 unknown 1.870 2.401
65 AT5G18060 AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 1.864 0.382
66 ATCG00340 ATCG00340 PSAB 1.862 1.283
67 AT4G15990 AT4G15990 unknown 1.853 1.186
68 AT1G53160 AT1G53160 FTM6, FLORAL TRANSITION AT THE MERISTEM6, SPL4, squamosa promoter binding protein-like 4 1.850 0.950
69 AT3G17580 AT3G17580 unknown 1.846 0.282
70 AT1G02340 AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 1.846 4.904
71 AT4G36850 AT4G36850 [PQ-loop repeat family protein / transmembrane family protein] 1.811 1.258
72 AT3G26200 AT3G26200 CYP71B22, cytochrome P450, family 71, subfamily B, polypeptide 22 1.792 -3.563
73 AT5G56550 AT5G56550 ATOXS3, OXIDATIVE STRESS 3, OXS3, OXIDATIVE STRESS 3 1.787 3.296
74 AT3G23030 AT3G23030 IAA2, indole-3-acetic acid inducible 2 1.778 1.268
75 AT4G14130 AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 1.774 7.817
76 AT1G11735 AT1G11735 MIR171B, microRNA171B 1.763 -0.515
77 AT3G29670 AT3G29670 PMAT2, phenolic glucoside malonyltransferase 2 1.762 2.084
78 AT5G66580 AT5G66580 unknown 1.755 1.088
79 AT1G75250 AT1G75250 ATRL6, RAD-like 6, RL6, RAD-like 6, RSM3, RADIALIS-LIKE SANT/MYB 3 1.750 0.769
80 AT1G11080 AT1G11080 scpl31, serine carboxypeptidase-like 31 1.750 2.556
81 ATCG00040 ATCG00040 MATK, maturase K 1.745 -1.712
82 AT2G20670 AT2G20670 unknown 1.743 2.879
83 AT4G17460 AT4G17460 HAT1, JAB, JAIBA 1.734 1.280
84 AT5G51810 AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 1.731 2.141
85 AT4G36410 AT4G36410 UBC17, ubiquitin-conjugating enzyme 17 1.728 1.665
86 AT5G35777 AT5G35777 [copia-like retrotransposon family, has a 2.0e-67 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] 1.727 1.836
87 AT1G69490 AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 1.722 1.069
88 AT4G15248 AT4G15248 BBX30, B-box domain protein 30 -5.733 -5.513
89 AT4G34550 AT4G34550 unknown -4.555 -0.709
90 AT2G15020 AT2G15020 unknown -4.010 -11.023
91 AT3G21150 AT3G21150 B-box 32 -3.503 -5.159
92 AT5G20790 AT5G20790 unknown -3.476 -4.529
93 AT2G36750 AT2G36750 UGT73C1, UDP-glucosyl transferase 73C1 -3.345 -0.175
94 AT2G27420 AT2G27420 [Cysteine proteinases superfamily protein] -3.232 -5.181
95 AT3G21890 AT3G21890 BBX31, B-box domain protein 31 -3.015 -5.611
96 AT3G09450 AT3G09450 unknown -2.936 -5.098
97 AT3G44450 AT3G44450 unknown -2.720 -5.824
98 AT1G65870 AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] -2.684 -6.775
99 AT3G15310 AT3G15310 unknown -2.681 -8.378
100 AT1G73010 AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 -2.630 1.331
101 AT5G66740 AT5G66740 unknown -2.566 -5.714
102 AT3G17790 AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 -2.542 2.480
103 AT4G27360 AT4G27360 [Dynein light chain type 1 family protein] -2.535 -4.101
104 AT2G29090 AT2G29090 CYP707A2, cytochrome P450, family 707, subfamily A, polypeptide 2 -2.515 5.104
105 AT2G21320 AT2G21320 BBX18, B-box domain protein 18 -2.361 -2.936
106 AT1G23205 AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -2.162 -1.897
107 AT4G29110 AT4G29110 unknown -2.159 -1.155
108 AT5G46830 AT5G46830 ATNIG1, NACL-INDUCIBLE GENE 1, NIG1, NACL-inducible gene 1 -2.117 -0.175
109 AT1G66725 AT1G66725 MIR163, microRNA163 -2.036 -2.379
110 AT1G48100 AT1G48100 [Pectin lyase-like superfamily protein] -1.981 -1.510
111 AT1G01520 AT1G01520 ASG4, ALTERED SEED GERMINATION 4 -1.978 -2.155
112 AT3G52740 AT3G52740 unknown -1.963 -3.156
113 AT1G61800 AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 -1.955 1.764
114 AT1G51090 AT1G51090 [Heavy metal transport/detoxification superfamily protein ] -1.916 5.459
115 AT4G12320 AT4G12320 CYP706A6, cytochrome P450, family 706, subfamily A, polypeptide 6 -1.861 0.191
116 AT5G24155 AT5G24155 [FAD/NAD(P)-binding oxidoreductase family protein] -1.840 -2.117
117 AT5G61350 AT5G61350 [Protein kinase superfamily protein] -1.812 -4.754
118 AT1G55910 AT1G55910 ZIP11, zinc transporter 11 precursor -1.806 -2.953
119 AT1G24580 AT1G24580 [RING/U-box superfamily protein] -1.764 -3.205
120 AT5G42760 AT5G42760 [Leucine carboxyl methyltransferase] -1.763 -3.921
121 AT3G22840 AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN -1.755 -0.948
122 AT3G43110 AT3G43110 unknown -1.751 2.649
123 AT3G04140 AT3G04140 [Ankyrin repeat family protein] -1.745 -1.943
124 AT4G01080 AT4G01080 TBL26, TRICHOME BIREFRINGENCE-LIKE 26 -1.740 -3.506
125 AT5G20150 AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 -1.735 -0.234
126 AT1G60590 AT1G60590 [Pectin lyase-like superfamily protein] -1.731 -3.525
127 AT2G11810 AT2G11810 ATMGD3, MGD3, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MGDC, monogalactosyldiacylglycerol synthase type C -1.706 -1.325
128 AT1G64500 AT1G64500 [Glutaredoxin family protein] -1.694 -0.698
129 AT3G10150 AT3G10150 ATPAP16, PAP16, purple acid phosphatase 16 -1.682 -3.382
130 AT1G66540 AT1G66540 [Cytochrome P450 superfamily protein] -1.657 -3.418
131 AT5G55340 AT5G55340 [MBOAT (membrane bound O-acyl transferase) family protein] -1.651 -0.175
132 AT5G24660 AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -1.645 -3.843
133 AT4G26850 AT4G26850 VTC2, vitamin c defective 2 -1.645 -1.546
134 AT3G02040 AT3G02040 AtGDPD1, GDPD1, Glycerophosphodiester phosphodiesterase 1, SRG3, senescence-related gene 3 -1.641 5.005
135 AT5G54470 AT5G54470 BBX29, B-box domain protein 29 -1.618 0.251
136 AT1G17100 AT1G17100 AtHBP1, HBP1, haem-binding protein 1 -1.616 -0.371
137 AT2G30766 AT2G30766 unknown -1.615 -6.405
138 AT1G02820 AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 -1.608 -1.725
139 AT2G36800 AT2G36800 DOGT1, don-glucosyltransferase 1, UGT73C5, UDP-GLUCOSYL TRANSFERASE 73C5 -1.603 -2.275
140 AT2G36630 AT2G36630 [Sulfite exporter TauE/SafE family protein] -1.602 -0.017
141 AT2G25680 AT2G25680 MOT1, molybdate transporter 1 -1.593 -0.421
142 AT4G14400 AT4G14400 ACD6, ACCELERATED CELL DEATH 6 -1.579 -3.692
143 AT2G44940 AT2G44940 [Integrase-type DNA-binding superfamily protein] -1.577 -2.699
144 AT1G63580 AT1G63580 [Receptor-like protein kinase-related family protein] -1.570 2.702
145 AT1G47400 AT1G47400 unknown -1.555 -2.203
146 AT1G20070 AT1G20070 unknown -1.531 -1.000
147 AT3G14200 AT3G14200 [Chaperone DnaJ-domain superfamily protein] -1.525 1.104
148 AT3G47430 AT3G47430 PEX11B, peroxin 11B -1.514 -0.686
149 AT5G01790 AT5G01790 unknown -1.513 -1.220
150 AT5G17300 AT5G17300 RVE1, REVEILLE 1 -1.513 -0.173
151 AT5G24150 AT5G24150 SQE5, SQUALENE MONOOXYGENASE 5, SQP1 -1.498 -8.309
152 AT1G55960 AT1G55960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -1.484 -2.894
153 AT5G41900 AT5G41900 [alpha/beta-Hydrolases superfamily protein] -1.476 -2.865
154 AT1G10640 AT1G10640 [Pectin lyase-like superfamily protein] -1.459 -2.850
155 AT2G46790 AT2G46790 APRR9, Arabidopsis pseudo-response regulator 9, PRR9, pseudo-response regulator 9, TL1, TOC1-LIKE PROTEIN 1 -1.437 0.804
156 AT5G23730 AT5G23730 EFO2, EARLY FLOWERING BY OVEREXPRESSION 2, RUP2, REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2 -1.436 -3.456
157 AT3G47420 AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 -1.425 -1.713
158 AT2G29170 AT2G29170 [NAD(P)-binding Rossmann-fold superfamily protein] -1.413 -2.941
159 AT5G01820 AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 -1.394 -1.149
160 AT4G17090 AT4G17090 AtBAM3, BAM3, BETA-AMYLASE 3, BMY8, BETA-AMYLASE 8, CT-BMY, chloroplast beta-amylase -1.389 -1.302
161 AT1G06980 AT1G06980 unknown -1.387 2.389
162 AT4G16880 AT4G16880 [Leucine-rich repeat (LRR) family protein] -1.386 -5.071
163 AT3G17609 AT3G17609 HYH, HY5-homolog -1.383 -5.146
164 AT5G45850 AT5G45850 unknown -1.378 -0.175
165 AT1G16730 AT1G16730 unknown -1.377 -2.414
166 AT2G39710 AT2G39710 [Eukaryotic aspartyl protease family protein] -1.367 1.304
167 AT3G21670 AT3G21670 AtNPF6.4, NPF6.4, NRT1/ PTR family 6.4 -1.365 -1.786
168 AT1G56650 AT1G56650 ATMYB75, MYB DOMAIN PROTEIN 75, MYB75, MYELOBLASTOSIS PROTEIN 75, PAP1, production of anthocyanin pigment 1, SIAA1, SUC-INDUCED ANTHOCYANIN ACCUMULATION 1 -1.365 -1.647
169 AT5G54130 AT5G54130 [Calcium-binding endonuclease/exonuclease/phosphatase family] -1.361 -2.835
170 AT1G64900 AT1G64900 CYP89, CYP89A2, cytochrome P450, family 89, subfamily A, polypeptide 2 -1.358 -0.386
171 AT1G20470 AT1G20470 SAUR60, SMALL AUXIN UPREGULATED RNA 60 -1.353 -0.779
172 AT4G02410 AT4G02410 AtLPK1, LecRK-IV.3, L-type lectin receptor kinase IV.3, LPK1, lectin-like protein kinase 1 -1.335 -1.351
173 AT4G00165 AT4G00165 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -1.329 -5.412