4.0:Information of module
Col-0 DEX Shade
In comparison with Dark 6h wt help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009725 response to hormone BP 5.364e-35
GO:0009719 response to endogenous stimulus BP 3.897e-34
GO:0010033 response to organic substance BP 3.738e-28
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 2.811e-39
GO:0009628 response to abiotic stimulus BP 2.111e-36
GO:1901700 response to oxygen-containing compound BP 8.257e-29
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 DEX Shade		 Log2 signal ratio
Dark 6h wt
1 AT4G27150 AT4G27150 AT2S2, SESA2, seed storage albumin 2 8.902 -0.047
2 AT4G27160 AT4G27160 AT2S3, SESA3, seed storage albumin 3 8.699 -0.047
3 AT4G27140 AT4G27140 AT2S1, SESA1, seed storage albumin 1 8.564 -0.047
4 AT4G27170 AT4G27170 AT2S4, SESA4, seed storage albumin 4 7.696 -0.047
5 AT1G03880 AT1G03880 CRB, CRUCIFERIN B, CRU2, cruciferin 2 7.544 -0.047
6 AT4G28520 AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 7.016 -0.047
7 AT1G47540 AT1G47540 [Scorpion toxin-like knottin superfamily protein] 6.964 -0.047
8 AT4G25140 AT4G25140 OLE1, OLEOSIN 1, OLEO1, oleosin 1 5.017 -0.047
9 AT4G31380 AT4G31380 FLP1, FPF1-like protein 1 4.955 4.062
10 AT5G54740 AT5G54740 SESA5, seed storage albumin 5 4.901 -0.047
11 AT2G05580 AT2G05580 [Glycine-rich protein family] 4.756 -0.047
12 AT1G04180 AT1G04180 YUC9, YUCCA 9 4.447 4.349
13 AT2G15010 AT2G15010 [Plant thionin] 4.417 -0.047
14 AT4G26740 AT4G26740 AtCLO1, ATPXG1, ARABIDOPSIS THALIANA PEROXYGENASE 1, ATS1, seed gene 1, CLO1, CALEOSIN1 4.337 -0.047
15 AT2G44910 AT2G44910 ATHB-4, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, ATHB4, homeobox-leucine zipper protein 4, HB4, homeobox-leucine zipper protein 4 3.537 1.535
16 AT3G21330 AT3G21330 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 3.429 5.847
17 AT4G32280 AT4G32280 IAA29, indole-3-acetic acid inducible 29 3.028 3.883
18 AT2G42870 AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 2.943 3.870
19 ATCG00290 ATCG00290 TRNS.2 2.928 -0.385
20 AT3G43850 AT3G43850 unknown 2.754 5.177
21 AT4G16780 AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 2.735 2.945
22 AT3G03830 AT3G03830 SAUR28, SMALL AUXIN UP RNA 28 2.710 0.189
23 AT3G62950 AT3G62950 [Thioredoxin superfamily protein] 2.647 2.255
24 AT5G65800 AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 2.596 3.287
25 AT4G35770 AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 2.588 8.010
26 AT3G22961 AT3G22961 [Paired amphipathic helix (PAH2) superfamily protein] 2.500 4.821
27 AT2G18700 AT2G18700 ATTPS11, trehalose phosphatase/synthase 11, ATTPSB, TPS11, trehalose phosphatase/synthase 11, TPS11, TREHALOSE-6-PHOSPHATE SYNTHASE 11 2.500 2.700
28 AT3G50800 AT3G50800 unknown 2.490 0.892
29 AT4G27450 AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] 2.469 2.878
30 AT5G18050 AT5G18050 SAUR22, SMALL AUXIN UP RNA 22 2.460 3.222
31 AT5G44260 AT5G44260 AtTZF5, TZF5, Tandem CCCH Zinc Finger protein 5 2.448 2.521
32 AT5G18010 AT5G18010 SAUR19, small auxin up RNA 19 2.400 1.656
33 AT3G21320 AT3G21320 unknown 2.364 5.674
34 AT5G12050 AT5G12050 unknown 2.329 1.896
35 AT4G37770 AT4G37770 ACS8, 1-amino-cyclopropane-1-carboxylate synthase 8 2.321 5.841
36 AT3G29370 AT3G29370 P1R3, P1R3 2.257 3.799
37 AT2G46970 AT2G46970 PIL1, phytochrome interacting factor 3-like 1 2.154 1.494
38 AT1G26240 AT1G26240 [Proline-rich extensin-like family protein] 2.121 -0.047
39 AT5G22920 AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] 2.118 4.517
40 AT3G47340 AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 2.117 6.842
41 AT1G02620 AT1G02620 [Ras-related small GTP-binding family protein] 2.116 5.715
42 AT1G02660 AT1G02660 [alpha/beta-Hydrolases superfamily protein] 2.112 3.935
43 AT4G16000 AT4G16000 unknown 2.107 2.530
44 ATCG00350 ATCG00350 PSAA 2.098 -0.055
45 AT1G02640 AT1G02640 ATBXL2, BETA-XYLOSIDASE 2, BXL2, beta-xylosidase 2 2.091 1.561
46 AT4G28720 AT4G28720 YUC8, YUCCA 8 2.090 1.504
47 AT4G34770 AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 2.083 0.526
48 AT5G25640 AT5G25640 [Rhomboid-related intramembrane serine protease family protein] 2.068 -1.272
49 AT1G02610 AT1G02610 [RING/FYVE/PHD zinc finger superfamily protein] 2.056 1.936
50 AT5G43890 AT5G43890 SUPER1, SUPPRESSOR OF ER 1, YUC5, YUCCA5 2.042 2.327
51 AT3G62550 AT3G62550 [Adenine nucleotide alpha hydrolases-like superfamily protein] 2.038 6.672
52 AT2G23270 AT2G23270 unknown 2.012 -1.267
53 AT3G48360 AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 2.007 2.434
54 AT5G62280 AT5G62280 unknown 2.003 2.724
55 AT3G15450 AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 1.998 4.931
56 AT5G47370 AT5G47370 HAT2 1.986 2.831
57 AT5G39860 AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 1.983 1.225
58 AT2G18010 AT2G18010 SAUR10, SMALL AUXIN UPREGULATED RNA 10 1.961 1.032
59 ATCG00720 ATCG00720 PETB, photosynthetic electron transfer B 1.927 -0.255
60 AT5G46240 AT5G46240 AtKAT1, KAT1, potassium channel in Arabidopsis thaliana 1 1.921 0.218
61 AT4G26288 AT4G26288 unknown 1.896 4.051
62 AT1G49130 AT1G49130 BBX17, B-box domain protein 17 1.884 2.768
63 AT5G07010 AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 1.881 6.056
64 AT4G28085 AT4G28085 unknown 1.870 1.817
65 AT5G18060 AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 1.864 1.894
66 ATCG00340 ATCG00340 PSAB 1.862 0.016
67 AT4G15990 AT4G15990 unknown 1.853 1.379
68 AT1G53160 AT1G53160 FTM6, FLORAL TRANSITION AT THE MERISTEM6, SPL4, squamosa promoter binding protein-like 4 1.850 0.685
69 AT3G17580 AT3G17580 unknown 1.846 -0.884
70 AT1G02340 AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 1.846 3.312
71 AT4G36850 AT4G36850 [PQ-loop repeat family protein / transmembrane family protein] 1.811 2.474
72 AT3G26200 AT3G26200 CYP71B22, cytochrome P450, family 71, subfamily B, polypeptide 22 1.792 -3.609
73 AT5G56550 AT5G56550 ATOXS3, OXIDATIVE STRESS 3, OXS3, OXIDATIVE STRESS 3 1.787 1.289
74 AT3G23030 AT3G23030 IAA2, indole-3-acetic acid inducible 2 1.778 0.751
75 AT4G14130 AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 1.774 3.360
76 AT1G11735 AT1G11735 MIR171B, microRNA171B 1.763 -0.821
77 AT3G29670 AT3G29670 PMAT2, phenolic glucoside malonyltransferase 2 1.762 1.899
78 AT5G66580 AT5G66580 unknown 1.755 2.552
79 AT1G75250 AT1G75250 ATRL6, RAD-like 6, RL6, RAD-like 6, RSM3, RADIALIS-LIKE SANT/MYB 3 1.750 0.278
80 AT1G11080 AT1G11080 scpl31, serine carboxypeptidase-like 31 1.750 1.548
81 ATCG00040 ATCG00040 MATK, maturase K 1.745 -1.606
82 AT2G20670 AT2G20670 unknown 1.743 2.357
83 AT4G17460 AT4G17460 HAT1, JAB, JAIBA 1.734 1.372
84 AT5G51810 AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 1.731 3.732
85 AT4G36410 AT4G36410 UBC17, ubiquitin-conjugating enzyme 17 1.728 0.848
86 AT5G35777 AT5G35777 [copia-like retrotransposon family, has a 2.0e-67 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] 1.727 1.560
87 AT1G69490 AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 1.722 0.580
88 AT4G15248 AT4G15248 BBX30, B-box domain protein 30 -5.733 -5.632
89 AT4G34550 AT4G34550 unknown -4.555 -0.047
90 AT2G15020 AT2G15020 unknown -4.010 -6.260
91 AT3G21150 AT3G21150 B-box 32 -3.503 -5.264
92 AT5G20790 AT5G20790 unknown -3.476 -1.882
93 AT2G36750 AT2G36750 UGT73C1, UDP-glucosyl transferase 73C1 -3.345 1.798
94 AT2G27420 AT2G27420 [Cysteine proteinases superfamily protein] -3.232 -4.984
95 AT3G21890 AT3G21890 BBX31, B-box domain protein 31 -3.015 -4.683
96 AT3G09450 AT3G09450 unknown -2.936 -8.843
97 AT3G44450 AT3G44450 unknown -2.720 -4.233
98 AT1G65870 AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] -2.684 -6.244
99 AT3G15310 AT3G15310 unknown -2.681 -8.710
100 AT1G73010 AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 -2.630 3.253
101 AT5G66740 AT5G66740 unknown -2.566 -5.940
102 AT3G17790 AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 -2.542 0.851
103 AT4G27360 AT4G27360 [Dynein light chain type 1 family protein] -2.535 -4.513
104 AT2G29090 AT2G29090 CYP707A2, cytochrome P450, family 707, subfamily A, polypeptide 2 -2.515 2.319
105 AT2G21320 AT2G21320 BBX18, B-box domain protein 18 -2.361 -3.064
106 AT1G23205 AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -2.162 -2.778
107 AT4G29110 AT4G29110 unknown -2.159 -0.493
108 AT5G46830 AT5G46830 ATNIG1, NACL-INDUCIBLE GENE 1, NIG1, NACL-inducible gene 1 -2.117 -0.047
109 AT1G66725 AT1G66725 MIR163, microRNA163 -2.036 -2.204
110 AT1G48100 AT1G48100 [Pectin lyase-like superfamily protein] -1.981 -0.978
111 AT1G01520 AT1G01520 ASG4, ALTERED SEED GERMINATION 4 -1.978 -5.160
112 AT3G52740 AT3G52740 unknown -1.963 -1.792
113 AT1G61800 AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 -1.955 -0.308
114 AT1G51090 AT1G51090 [Heavy metal transport/detoxification superfamily protein ] -1.916 5.050
115 AT4G12320 AT4G12320 CYP706A6, cytochrome P450, family 706, subfamily A, polypeptide 6 -1.861 -0.061
116 AT5G24155 AT5G24155 [FAD/NAD(P)-binding oxidoreductase family protein] -1.840 -3.881
117 AT5G61350 AT5G61350 [Protein kinase superfamily protein] -1.812 -4.676
118 AT1G55910 AT1G55910 ZIP11, zinc transporter 11 precursor -1.806 -3.109
119 AT1G24580 AT1G24580 [RING/U-box superfamily protein] -1.764 -3.334
120 AT5G42760 AT5G42760 [Leucine carboxyl methyltransferase] -1.763 -5.648
121 AT3G22840 AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN -1.755 -4.206
122 AT3G43110 AT3G43110 unknown -1.751 -0.975
123 AT3G04140 AT3G04140 [Ankyrin repeat family protein] -1.745 -1.818
124 AT4G01080 AT4G01080 TBL26, TRICHOME BIREFRINGENCE-LIKE 26 -1.740 -2.629
125 AT5G20150 AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 -1.735 0.461
126 AT1G60590 AT1G60590 [Pectin lyase-like superfamily protein] -1.731 -6.507
127 AT2G11810 AT2G11810 ATMGD3, MGD3, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MGDC, monogalactosyldiacylglycerol synthase type C -1.706 0.164
128 AT1G64500 AT1G64500 [Glutaredoxin family protein] -1.694 -2.287
129 AT3G10150 AT3G10150 ATPAP16, PAP16, purple acid phosphatase 16 -1.682 -3.809
130 AT1G66540 AT1G66540 [Cytochrome P450 superfamily protein] -1.657 -1.850
131 AT5G55340 AT5G55340 [MBOAT (membrane bound O-acyl transferase) family protein] -1.651 -0.047
132 AT5G24660 AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -1.645 -3.645
133 AT4G26850 AT4G26850 VTC2, vitamin c defective 2 -1.645 -3.674
134 AT3G02040 AT3G02040 AtGDPD1, GDPD1, Glycerophosphodiester phosphodiesterase 1, SRG3, senescence-related gene 3 -1.641 4.202
135 AT5G54470 AT5G54470 BBX29, B-box domain protein 29 -1.618 1.984
136 AT1G17100 AT1G17100 AtHBP1, HBP1, haem-binding protein 1 -1.616 -1.245
137 AT2G30766 AT2G30766 unknown -1.615 -4.061
138 AT1G02820 AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 -1.608 -0.835
139 AT2G36800 AT2G36800 DOGT1, don-glucosyltransferase 1, UGT73C5, UDP-GLUCOSYL TRANSFERASE 73C5 -1.603 -1.512
140 AT2G36630 AT2G36630 [Sulfite exporter TauE/SafE family protein] -1.602 -0.850
141 AT2G25680 AT2G25680 MOT1, molybdate transporter 1 -1.593 -1.141
142 AT4G14400 AT4G14400 ACD6, ACCELERATED CELL DEATH 6 -1.579 -4.155
143 AT2G44940 AT2G44940 [Integrase-type DNA-binding superfamily protein] -1.577 -1.270
144 AT1G63580 AT1G63580 [Receptor-like protein kinase-related family protein] -1.570 -0.578
145 AT1G47400 AT1G47400 unknown -1.555 -4.832
146 AT1G20070 AT1G20070 unknown -1.531 -0.382
147 AT3G14200 AT3G14200 [Chaperone DnaJ-domain superfamily protein] -1.525 1.362
148 AT3G47430 AT3G47430 PEX11B, peroxin 11B -1.514 -2.716
149 AT5G01790 AT5G01790 unknown -1.513 -1.288
150 AT5G17300 AT5G17300 RVE1, REVEILLE 1 -1.513 -2.130
151 AT5G24150 AT5G24150 SQE5, SQUALENE MONOOXYGENASE 5, SQP1 -1.498 -4.143
152 AT1G55960 AT1G55960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -1.484 -3.414
153 AT5G41900 AT5G41900 [alpha/beta-Hydrolases superfamily protein] -1.476 -1.951
154 AT1G10640 AT1G10640 [Pectin lyase-like superfamily protein] -1.459 -3.904
155 AT2G46790 AT2G46790 APRR9, Arabidopsis pseudo-response regulator 9, PRR9, pseudo-response regulator 9, TL1, TOC1-LIKE PROTEIN 1 -1.437 5.894
156 AT5G23730 AT5G23730 EFO2, EARLY FLOWERING BY OVEREXPRESSION 2, RUP2, REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2 -1.436 -3.370
157 AT3G47420 AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 -1.425 -2.770
158 AT2G29170 AT2G29170 [NAD(P)-binding Rossmann-fold superfamily protein] -1.413 -0.917
159 AT5G01820 AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 -1.394 -1.831
160 AT4G17090 AT4G17090 AtBAM3, BAM3, BETA-AMYLASE 3, BMY8, BETA-AMYLASE 8, CT-BMY, chloroplast beta-amylase -1.389 -3.219
161 AT1G06980 AT1G06980 unknown -1.387 2.682
162 AT4G16880 AT4G16880 [Leucine-rich repeat (LRR) family protein] -1.386 -0.697
163 AT3G17609 AT3G17609 HYH, HY5-homolog -1.383 -6.708
164 AT5G45850 AT5G45850 unknown -1.378 -1.267
165 AT1G16730 AT1G16730 unknown -1.377 -2.337
166 AT2G39710 AT2G39710 [Eukaryotic aspartyl protease family protein] -1.367 -0.345
167 AT3G21670 AT3G21670 AtNPF6.4, NPF6.4, NRT1/ PTR family 6.4 -1.365 -1.644
168 AT1G56650 AT1G56650 ATMYB75, MYB DOMAIN PROTEIN 75, MYB75, MYELOBLASTOSIS PROTEIN 75, PAP1, production of anthocyanin pigment 1, SIAA1, SUC-INDUCED ANTHOCYANIN ACCUMULATION 1 -1.365 -0.578
169 AT5G54130 AT5G54130 [Calcium-binding endonuclease/exonuclease/phosphatase family] -1.361 -4.467
170 AT1G64900 AT1G64900 CYP89, CYP89A2, cytochrome P450, family 89, subfamily A, polypeptide 2 -1.358 -0.479
171 AT1G20470 AT1G20470 SAUR60, SMALL AUXIN UPREGULATED RNA 60 -1.353 -0.074
172 AT4G02410 AT4G02410 AtLPK1, LecRK-IV.3, L-type lectin receptor kinase IV.3, LPK1, lectin-like protein kinase 1 -1.335 -0.909
173 AT4G00165 AT4G00165 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -1.329 -3.423