4.0:Information of module
Col-0 DEX Shade
In comparison with seedling 1.5h after Gamma atm-1 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009725 response to hormone BP 5.364e-35
GO:0009719 response to endogenous stimulus BP 3.897e-34
GO:0010033 response to organic substance BP 3.738e-28
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 2.811e-39
GO:0009628 response to abiotic stimulus BP 2.111e-36
GO:1901700 response to oxygen-containing compound BP 8.257e-29
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 DEX Shade		 Log2 signal ratio
seedling 1.5h after Gamma atm-1
1 AT4G27150 AT4G27150 AT2S2, SESA2, seed storage albumin 2 8.902 -0.034
2 AT4G27160 AT4G27160 AT2S3, SESA3, seed storage albumin 3 8.699 -0.008
3 AT4G27140 AT4G27140 AT2S1, SESA1, seed storage albumin 1 8.564 0.040
4 AT4G27170 AT4G27170 AT2S4, SESA4, seed storage albumin 4 7.696 0.011
5 AT1G03880 AT1G03880 CRB, CRUCIFERIN B, CRU2, cruciferin 2 7.544 -0.043
6 AT4G28520 AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 7.016 0.050
7 AT1G47540 AT1G47540 [Scorpion toxin-like knottin superfamily protein] 6.964 -0.055
8 AT4G25140 AT4G25140 OLE1, OLEOSIN 1, OLEO1, oleosin 1 5.017 -0.058
9 AT4G31380 AT4G31380 FLP1, FPF1-like protein 1 4.955 no data
10 AT5G54740 AT5G54740 SESA5, seed storage albumin 5 4.901 0.022
11 AT2G05580 AT2G05580 [Glycine-rich protein family] 4.756 -0.050
12 AT1G04180 AT1G04180 YUC9, YUCCA 9 4.447 0.012
13 AT2G15010 AT2G15010 [Plant thionin] 4.417 0.081
14 AT4G26740 AT4G26740 AtCLO1, ATPXG1, ARABIDOPSIS THALIANA PEROXYGENASE 1, ATS1, seed gene 1, CLO1, CALEOSIN1 4.337 -0.048
15 AT2G44910 AT2G44910 ATHB-4, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, ATHB4, homeobox-leucine zipper protein 4, HB4, homeobox-leucine zipper protein 4 3.537 -0.066
16 AT3G21330 AT3G21330 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 3.429 no data
17 AT4G32280 AT4G32280 IAA29, indole-3-acetic acid inducible 29 3.028 -0.139
18 AT2G42870 AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 2.943 -0.144
19 ATCG00290 ATCG00290 TRNS.2 2.928 no data
20 AT3G43850 AT3G43850 unknown 2.754 no data
21 AT4G16780 AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 2.735 -0.060
22 AT3G03830 AT3G03830 SAUR28, SMALL AUXIN UP RNA 28 2.710 0.070
23 AT3G62950 AT3G62950 [Thioredoxin superfamily protein] 2.647 0.036
24 AT5G65800 AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 2.596 -0.017
25 AT4G35770 AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 2.588 -0.028
26 AT3G22961 AT3G22961 [Paired amphipathic helix (PAH2) superfamily protein] 2.500 no data
27 AT2G18700 AT2G18700 ATTPS11, trehalose phosphatase/synthase 11, ATTPSB, TPS11, trehalose phosphatase/synthase 11, TPS11, TREHALOSE-6-PHOSPHATE SYNTHASE 11 2.500 0.022
28 AT3G50800 AT3G50800 unknown 2.490 no data
29 AT4G27450 AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] 2.469 0.015
30 AT5G18050 AT5G18050 SAUR22, SMALL AUXIN UP RNA 22 2.460 no data
31 AT5G44260 AT5G44260 AtTZF5, TZF5, Tandem CCCH Zinc Finger protein 5 2.448 -0.006
32 AT5G18010 AT5G18010 SAUR19, small auxin up RNA 19 2.400 no data
33 AT3G21320 AT3G21320 unknown 2.364 no data
34 AT5G12050 AT5G12050 unknown 2.329 -0.115
35 AT4G37770 AT4G37770 ACS8, 1-amino-cyclopropane-1-carboxylate synthase 8 2.321 -0.273
36 AT3G29370 AT3G29370 P1R3, P1R3 2.257 -0.077
37 AT2G46970 AT2G46970 PIL1, phytochrome interacting factor 3-like 1 2.154 no data
38 AT1G26240 AT1G26240 [Proline-rich extensin-like family protein] 2.121 0.266
39 AT5G22920 AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] 2.118 -0.006
40 AT3G47340 AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 2.117 -0.393
41 AT1G02620 AT1G02620 [Ras-related small GTP-binding family protein] 2.116 0.038
42 AT1G02660 AT1G02660 [alpha/beta-Hydrolases superfamily protein] 2.112 -0.075
43 AT4G16000 AT4G16000 unknown 2.107 0.007
44 ATCG00350 ATCG00350 PSAA 2.098 -0.009
45 AT1G02640 AT1G02640 ATBXL2, BETA-XYLOSIDASE 2, BXL2, beta-xylosidase 2 2.091 -0.041
46 AT4G28720 AT4G28720 YUC8, YUCCA 8 2.090 0.046
47 AT4G34770 AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 2.083 -0.272
48 AT5G25640 AT5G25640 [Rhomboid-related intramembrane serine protease family protein] 2.068 -0.028
49 AT1G02610 AT1G02610 [RING/FYVE/PHD zinc finger superfamily protein] 2.056 no data
50 AT5G43890 AT5G43890 SUPER1, SUPPRESSOR OF ER 1, YUC5, YUCCA5 2.042 -0.102
51 AT3G62550 AT3G62550 [Adenine nucleotide alpha hydrolases-like superfamily protein] 2.038 0.021
52 AT2G23270 AT2G23270 unknown 2.012 0.460
53 AT3G48360 AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 2.007 -0.000
54 AT5G62280 AT5G62280 unknown 2.003 -0.053
55 AT3G15450 AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 1.998 0.003
56 AT5G47370 AT5G47370 HAT2 1.986 -0.012
57 AT5G39860 AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 1.983 0.039
58 AT2G18010 AT2G18010 SAUR10, SMALL AUXIN UPREGULATED RNA 10 1.961 -0.024
59 ATCG00720 ATCG00720 PETB, photosynthetic electron transfer B 1.927 -0.012
60 AT5G46240 AT5G46240 AtKAT1, KAT1, potassium channel in Arabidopsis thaliana 1 1.921 0.054
61 AT4G26288 AT4G26288 unknown 1.896 no data
62 AT1G49130 AT1G49130 BBX17, B-box domain protein 17 1.884 no data
63 AT5G07010 AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 1.881 -0.013
64 AT4G28085 AT4G28085 unknown 1.870 0.056
65 AT5G18060 AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 1.864 -0.032
66 ATCG00340 ATCG00340 PSAB 1.862 -0.007
67 AT4G15990 AT4G15990 unknown 1.853 no data
68 AT1G53160 AT1G53160 FTM6, FLORAL TRANSITION AT THE MERISTEM6, SPL4, squamosa promoter binding protein-like 4 1.850 0.059
69 AT3G17580 AT3G17580 unknown 1.846 no data
70 AT1G02340 AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 1.846 0.033
71 AT4G36850 AT4G36850 [PQ-loop repeat family protein / transmembrane family protein] 1.811 no data
72 AT3G26200 AT3G26200 CYP71B22, cytochrome P450, family 71, subfamily B, polypeptide 22 1.792 -0.036
73 AT5G56550 AT5G56550 ATOXS3, OXIDATIVE STRESS 3, OXS3, OXIDATIVE STRESS 3 1.787 no data
74 AT3G23030 AT3G23030 IAA2, indole-3-acetic acid inducible 2 1.778 -0.034
75 AT4G14130 AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 1.774 -0.061
76 AT1G11735 AT1G11735 MIR171B, microRNA171B 1.763 no data
77 AT3G29670 AT3G29670 PMAT2, phenolic glucoside malonyltransferase 2 1.762 -0.091
78 AT5G66580 AT5G66580 unknown 1.755 no data
79 AT1G75250 AT1G75250 ATRL6, RAD-like 6, RL6, RAD-like 6, RSM3, RADIALIS-LIKE SANT/MYB 3 1.750 -0.095
80 AT1G11080 AT1G11080 scpl31, serine carboxypeptidase-like 31 1.750 -0.041
81 ATCG00040 ATCG00040 MATK, maturase K 1.745 0.003
82 AT2G20670 AT2G20670 unknown 1.743 0.072
83 AT4G17460 AT4G17460 HAT1, JAB, JAIBA 1.734 -0.058
84 AT5G51810 AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 1.731 -0.005
85 AT4G36410 AT4G36410 UBC17, ubiquitin-conjugating enzyme 17 1.728 -0.090
86 AT5G35777 AT5G35777 [copia-like retrotransposon family, has a 2.0e-67 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] 1.727 no data
87 AT1G69490 AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 1.722 -0.013
88 AT4G15248 AT4G15248 BBX30, B-box domain protein 30 -5.733 no data
89 AT4G34550 AT4G34550 unknown -4.555 no data
90 AT2G15020 AT2G15020 unknown -4.010 0.094
91 AT3G21150 AT3G21150 B-box 32 -3.503 no data
92 AT5G20790 AT5G20790 unknown -3.476 0.677
93 AT2G36750 AT2G36750 UGT73C1, UDP-glucosyl transferase 73C1 -3.345 0.198
94 AT2G27420 AT2G27420 [Cysteine proteinases superfamily protein] -3.232 0.489
95 AT3G21890 AT3G21890 BBX31, B-box domain protein 31 -3.015 0.061
96 AT3G09450 AT3G09450 unknown -2.936 no data
97 AT3G44450 AT3G44450 unknown -2.720 0.296
98 AT1G65870 AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] -2.684 0.144
99 AT3G15310 AT3G15310 unknown -2.681 0.047
100 AT1G73010 AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 -2.630 0.576
101 AT5G66740 AT5G66740 unknown -2.566 0.050
102 AT3G17790 AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 -2.542 0.550
103 AT4G27360 AT4G27360 [Dynein light chain type 1 family protein] -2.535 no data
104 AT2G29090 AT2G29090 CYP707A2, cytochrome P450, family 707, subfamily A, polypeptide 2 -2.515 0.030
105 AT2G21320 AT2G21320 BBX18, B-box domain protein 18 -2.361 0.209
106 AT1G23205 AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -2.162 0.159
107 AT4G29110 AT4G29110 unknown -2.159 no data
108 AT5G46830 AT5G46830 ATNIG1, NACL-INDUCIBLE GENE 1, NIG1, NACL-inducible gene 1 -2.117 0.030
109 AT1G66725 AT1G66725 MIR163, microRNA163 -2.036 no data
110 AT1G48100 AT1G48100 [Pectin lyase-like superfamily protein] -1.981 0.077
111 AT1G01520 AT1G01520 ASG4, ALTERED SEED GERMINATION 4 -1.978 0.353
112 AT3G52740 AT3G52740 unknown -1.963 0.256
113 AT1G61800 AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 -1.955 0.248
114 AT1G51090 AT1G51090 [Heavy metal transport/detoxification superfamily protein ] -1.916 0.160
115 AT4G12320 AT4G12320 CYP706A6, cytochrome P450, family 706, subfamily A, polypeptide 6 -1.861 no data
116 AT5G24155 AT5G24155 [FAD/NAD(P)-binding oxidoreductase family protein] -1.840 no data
117 AT5G61350 AT5G61350 [Protein kinase superfamily protein] -1.812 0.042
118 AT1G55910 AT1G55910 ZIP11, zinc transporter 11 precursor -1.806 0.048
119 AT1G24580 AT1G24580 [RING/U-box superfamily protein] -1.764 no data
120 AT5G42760 AT5G42760 [Leucine carboxyl methyltransferase] -1.763 0.173
121 AT3G22840 AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN -1.755 0.170
122 AT3G43110 AT3G43110 unknown -1.751 0.082
123 AT3G04140 AT3G04140 [Ankyrin repeat family protein] -1.745 no data
124 AT4G01080 AT4G01080 TBL26, TRICHOME BIREFRINGENCE-LIKE 26 -1.740 0.247
125 AT5G20150 AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 -1.735 0.585
126 AT1G60590 AT1G60590 [Pectin lyase-like superfamily protein] -1.731 0.167
127 AT2G11810 AT2G11810 ATMGD3, MGD3, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MGDC, monogalactosyldiacylglycerol synthase type C -1.706 0.023
128 AT1G64500 AT1G64500 [Glutaredoxin family protein] -1.694 0.056
129 AT3G10150 AT3G10150 ATPAP16, PAP16, purple acid phosphatase 16 -1.682 0.110
130 AT1G66540 AT1G66540 [Cytochrome P450 superfamily protein] -1.657 -0.019
131 AT5G55340 AT5G55340 [MBOAT (membrane bound O-acyl transferase) family protein] -1.651 -0.029
132 AT5G24660 AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -1.645 0.266
133 AT4G26850 AT4G26850 VTC2, vitamin c defective 2 -1.645 0.173
134 AT3G02040 AT3G02040 AtGDPD1, GDPD1, Glycerophosphodiester phosphodiesterase 1, SRG3, senescence-related gene 3 -1.641 0.386
135 AT5G54470 AT5G54470 BBX29, B-box domain protein 29 -1.618 0.027
136 AT1G17100 AT1G17100 AtHBP1, HBP1, haem-binding protein 1 -1.616 0.053
137 AT2G30766 AT2G30766 unknown -1.615 no data
138 AT1G02820 AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 -1.608 0.134
139 AT2G36800 AT2G36800 DOGT1, don-glucosyltransferase 1, UGT73C5, UDP-GLUCOSYL TRANSFERASE 73C5 -1.603 no data
140 AT2G36630 AT2G36630 [Sulfite exporter TauE/SafE family protein] -1.602 0.399
141 AT2G25680 AT2G25680 MOT1, molybdate transporter 1 -1.593 0.012
142 AT4G14400 AT4G14400 ACD6, ACCELERATED CELL DEATH 6 -1.579 0.046
143 AT2G44940 AT2G44940 [Integrase-type DNA-binding superfamily protein] -1.577 0.049
144 AT1G63580 AT1G63580 [Receptor-like protein kinase-related family protein] -1.570 0.228
145 AT1G47400 AT1G47400 unknown -1.555 0.187
146 AT1G20070 AT1G20070 unknown -1.531 0.005
147 AT3G14200 AT3G14200 [Chaperone DnaJ-domain superfamily protein] -1.525 0.299
148 AT3G47430 AT3G47430 PEX11B, peroxin 11B -1.514 0.133
149 AT5G01790 AT5G01790 unknown -1.513 0.265
150 AT5G17300 AT5G17300 RVE1, REVEILLE 1 -1.513 0.121
151 AT5G24150 AT5G24150 SQE5, SQUALENE MONOOXYGENASE 5, SQP1 -1.498 0.153
152 AT1G55960 AT1G55960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -1.484 0.050
153 AT5G41900 AT5G41900 [alpha/beta-Hydrolases superfamily protein] -1.476 -0.481
154 AT1G10640 AT1G10640 [Pectin lyase-like superfamily protein] -1.459 0.009
155 AT2G46790 AT2G46790 APRR9, Arabidopsis pseudo-response regulator 9, PRR9, pseudo-response regulator 9, TL1, TOC1-LIKE PROTEIN 1 -1.437 no data
156 AT5G23730 AT5G23730 EFO2, EARLY FLOWERING BY OVEREXPRESSION 2, RUP2, REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2 -1.436 0.061
157 AT3G47420 AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 -1.425 0.324
158 AT2G29170 AT2G29170 [NAD(P)-binding Rossmann-fold superfamily protein] -1.413 no data
159 AT5G01820 AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 -1.394 0.343
160 AT4G17090 AT4G17090 AtBAM3, BAM3, BETA-AMYLASE 3, BMY8, BETA-AMYLASE 8, CT-BMY, chloroplast beta-amylase -1.389 0.040
161 AT1G06980 AT1G06980 unknown -1.387 -0.125
162 AT4G16880 AT4G16880 [Leucine-rich repeat (LRR) family protein] -1.386 no data
163 AT3G17609 AT3G17609 HYH, HY5-homolog -1.383 0.085
164 AT5G45850 AT5G45850 unknown -1.378 0.048
165 AT1G16730 AT1G16730 unknown -1.377 -0.069
166 AT2G39710 AT2G39710 [Eukaryotic aspartyl protease family protein] -1.367 -0.133
167 AT3G21670 AT3G21670 AtNPF6.4, NPF6.4, NRT1/ PTR family 6.4 -1.365 0.145
168 AT1G56650 AT1G56650 ATMYB75, MYB DOMAIN PROTEIN 75, MYB75, MYELOBLASTOSIS PROTEIN 75, PAP1, production of anthocyanin pigment 1, SIAA1, SUC-INDUCED ANTHOCYANIN ACCUMULATION 1 -1.365 0.026
169 AT5G54130 AT5G54130 [Calcium-binding endonuclease/exonuclease/phosphatase family] -1.361 0.191
170 AT1G64900 AT1G64900 CYP89, CYP89A2, cytochrome P450, family 89, subfamily A, polypeptide 2 -1.358 0.080
171 AT1G20470 AT1G20470 SAUR60, SMALL AUXIN UPREGULATED RNA 60 -1.353 no data
172 AT4G02410 AT4G02410 AtLPK1, LecRK-IV.3, L-type lectin receptor kinase IV.3, LPK1, lectin-like protein kinase 1 -1.335 0.017
173 AT4G00165 AT4G00165 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -1.329 no data