4.0:Information of module
spores of Gigaspora rosea
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006284 base-excision repair BP 5.501e-03
GO:0051052 regulation of DNA metabolic process BP 6.708e-03
GO:0000303 response to superoxide BP 1.113e-02
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0022604 regulation of cell morphogenesis BP 9.092e-03
GO:0051128 regulation of cellular component organiz... BP 9.542e-03
GO:0000902 cell morphogenesis BP 1.018e-02
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
spores of Gigaspora rosea		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 262097_at AT1G55990 [glycine-rich protein] 0.162 -1.333
2 264497_at AT1G30840 ATPUP4, purine permease 4, PUP4, purine permease 4 0.137 -1.019
3 253400_at AT4G32860 unknown 0.128 -0.572
4 265925_at AT2G18610 unknown 0.116 -0.217
5 249524_at AT5G38520 [alpha/beta-Hydrolases superfamily protein] 0.115 0.657
6 259108_at AT3G05540 [Methionine sulfoxide reductase (MSS4-like) family protein] 0.105 -1.730
7 256140_at AT1G48650 [DEA(D/H)-box RNA helicase family protein] 0.098 0.696
8 252950_at AT4G38690 [PLC-like phosphodiesterases superfamily protein] 0.092 0.245
9 250747_at AT5G05900 [UDP-Glycosyltransferase superfamily protein] 0.091 -0.993
10 248402_at AT5G52100 CRR1, chlororespiration reduction 1 0.088 0.057
11 253848_at AT4G28020 unknown 0.086 0.364
12 264037_at AT2G03750 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.084 0.741
13 257051_at AT3G15270 SPL5, squamosa promoter binding protein-like 5 0.084 -0.923
14 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] 0.082 0.390
15 260023_at AT1G30040 ATGA2OX2, gibberellin 2-oxidase, GA2OX2, gibberellin 2-oxidase, GA2OX2, GIBBERELLIN 2-OXIDASE 2 0.081 0.251
16 262855_at AT1G20860 PHT1;8, phosphate transporter 1;8 0.077 -0.282
17 249464_at AT5G39710 EMB2745, EMBRYO DEFECTIVE 2745 0.075 -0.661
18 245545_at AT4G15280 UGT71B5, UDP-glucosyl transferase 71B5 0.075 -0.646
19 263138_at AT1G65090 unknown 0.074 1.026
20 255621_at AT4G01390 [TRAF-like family protein] 0.073 0.168
21 245419_at AT4G17380 ATMSH4, ARABIDOPSIS MUTS HOMOLOG 4, MSH4, MUTS HOMOLOG 4, MSH4, MUTS-like protein 4 0.072 -0.210
22 252975_s_at AT4G38430 ATROPGEF1, ROPGEF1, ROP (rho of plants) guanine nucleotide exchange factor 1 0.072 0.957
23 255208_at AT4G07580 [pseudogene] 0.070 -0.436
24 247956_at AT5G56970 ATCKX3, CKX3, cytokinin oxidase 3 0.070 -0.445
25 257421_at AT1G12030 unknown 0.069 -0.161
26 252304_at AT3G49230 unknown 0.068 -0.816
27 246685_at AT5G33350 [pseudogene] 0.068 -0.154
28 266840_at AT2G26160 unknown 0.068 -0.470
29 257860_at AT3G13062 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.067 0.550
30 247814_at AT5G58310 ATMES18, ARABIDOPSIS THALIANA METHYL ESTERASE 18, MES18, methyl esterase 18 0.066 -0.766
31 251841_at AT3G54980 [Pentatricopeptide repeat (PPR) superfamily protein] 0.066 -0.526
32 267216_at AT2G02620 [Cysteine/Histidine-rich C1 domain family protein] -0.089 -0.079
33 245503_at AT4G15650 unknown -0.083 -1.312
34 249309_at AT5G41410 BEL1, BELL 1 -0.078 -0.745
35 252572_at AT3G45290 ATMLO3, MILDEW RESISTANCE LOCUS O 3, MLO3, MILDEW RESISTANCE LOCUS O 3 -0.076 -0.842
36 256493_at AT1G31600 AtTRM9, Arabidopsis thaliana tRNA methyltransferase 9, TRM9, tRNA methyltransferase 9 -0.075 0.853
37 246616_at AT5G36260 [Eukaryotic aspartyl protease family protein] -0.072 -1.041
38 250161_at AT5G15240 [Transmembrane amino acid transporter family protein] -0.071 -0.562
39 260688_at AT1G17665 unknown -0.069 -0.925
40 249053_at AT5G44440 [FAD-binding Berberine family protein] -0.065 -0.423
41 245604_at AT4G14290 [alpha/beta-Hydrolases superfamily protein] -0.063 -0.117
42 258034_at AT3G21300 [RNA methyltransferase family protein] -0.062 0.150
43 264895_at AT1G23100 [GroES-like family protein] -0.062 0.450
44 262705_at AT1G16260 [Wall-associated kinase family protein] -0.060 0.684
45 251598_at AT3G57600 [Integrase-type DNA-binding superfamily protein] -0.057 -0.554
46 254479_at AT4G20350 [oxidoreductases] -0.056 0.163
47 248029_at AT5G55700 BAM4, beta-amylase 4, BMY6, BETA-AMYLASE 6 -0.055 0.059
48 257900_at AT3G28420 [Putative membrane lipoprotein] -0.054 -0.059
49 263069_at AT2G17590 [Cysteine/Histidine-rich C1 domain family protein] -0.054 -0.587
50 256710_at AT3G30350 GLV3, GOLVEN 3, RGF4, root meristem growth factor 4 -0.054 0.151
51 258507_at AT3G06500 A/N-InvC, alkaline/neutral invertase C -0.054 0.218
52 251611_at AT3G57940 unknown -0.052 -0.012
53 262312_at AT1G70830 MLP28, MLP-like protein 28 -0.051 0.804
54 249426_at AT5G39840 [ATP-dependent RNA helicase, mitochondrial, putative] -0.050 -0.126
55 262059_at AT1G80030 DJA7, DNA J protein A7 -0.050 -0.146
56 257441_at AT2G04020 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.049 0.190
57 260292_at AT1G63680 APG13, ALBINO OR PALE-GREEN 13, ATMURE, MURE, PDE316, PIGMENT DEFECTIVE EMBRYO 316 -0.047 0.639
58 262074_at AT1G59670 ATGSTU15, glutathione S-transferase TAU 15, GSTU15, glutathione S-transferase TAU 15 -0.047 -1.006
59 257982_at AT3G20780 ATTOP6B, topoisomerase 6 subunit B, BIN3, BRASSINOSTEROID INSENSITIVE 3, HYP6, ELONGATED HYPOCOTYL 6, RHL3, ROOT HAIRLESS 3, TOP6B, topoisomerase 6 subunit B -0.046 0.274
60 257476_at AT1G80960 [F-box and Leucine Rich Repeat domains containing protein] -0.046 0.461
61 251545_at AT3G58810 ATMTP3, ARABIDOPSIS METAL TOLERANCE PROTEIN 3, ATMTPA2, MTP3, METAL TOLERANCE PROTEIN 3, MTPA2, metal tolerance protein A2 -0.046 -1.221