4.0:Information of module
ex1 flu dark 8hours/30 minute light
In comparison with root cells columella root cap -Fe help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 1.617e-16
GO:0010243 response to organonitrogen compound BP 2.767e-16
GO:0009692 ethylene metabolic process BP 5.621e-14
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0045087 innate immune response BP 1.474e-16
GO:0006955 immune response BP 2.182e-16
GO:0009697 salicylic acid biosynthetic process BP 8.753e-16
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ex1 flu dark 8hours/30 minute light		 Log2 signal ratio
root cells columella root cap -Fe
1 245250_at AT4G17490 ATERF6, ethylene responsive element binding factor 6, ERF-6-6, ERF6, ethylene responsive element binding factor 6 0.596 1.038
2 248799_at AT5G47230 ATERF-5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ATERF5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5, AtMACD1, ERF102, ERF5, ethylene responsive element binding factor 5 0.544 0.553
3 258653_at AT3G09870 SAUR48, SMALL AUXIN UPREGULATED RNA 48 0.512 0.080
4 266821_at AT2G44840 ATERF13, ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13, EREBP, ERF13, ethylene-responsive element binding factor 13 0.471 1.274
5 261476_at AT1G14480 [Ankyrin repeat family protein] 0.410 0.319
6 256442_at AT3G10930 unknown 0.384 1.261
7 265441_at AT2G20870 [cell wall protein precursor, putative] 0.370 0.141
8 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 0.363 0.907
9 247431_at AT5G62520 SRO5, similar to RCD one 5 0.355 0.971
10 258719_at AT3G09540 [Pectin lyase-like superfamily protein] 0.330 -0.507
11 252679_at AT3G44260 AtCAF1a, CCR4- associated factor 1a, CAF1a, CCR4- associated factor 1a 0.318 0.552
12 252368_at AT3G48520 CYP94B3, cytochrome P450, family 94, subfamily B, polypeptide 3 0.290 0.133
13 245842_at AT1G58430 RXF26 0.287 0.070
14 246584_at AT5G14730 unknown 0.284 0.826
15 245041_at AT2G26530 AR781 0.265 0.409
16 254120_at AT4G24570 DIC2, dicarboxylate carrier 2 0.264 1.116
17 248870_at AT5G46710 [PLATZ transcription factor family protein] 0.253 0.332
18 267623_at AT2G39650 unknown 0.232 0.519
19 245119_at AT2G41640 [Glycosyltransferase family 61 protein] 0.201 0.978
20 248496_at AT5G50790 AtSWEET10, SWEET10 0.188 0.107
21 262381_at AT1G72900 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.182 -0.185
22 252474_at AT3G46620 unknown 0.178 0.366
23 258027_at AT3G19515 unknown -0.881 0.224
24 256617_at AT3G22240 unknown -0.817 -0.424
25 258424_at AT3G16750 unknown -0.672 0.159
26 258434_at AT3G16770 ATEBP, ethylene-responsive element binding protein, EBP, ethylene-responsive element binding protein, ERF72, ETHYLENE RESPONSE FACTOR 72, RAP2.3, RELATED TO AP2 3 -0.579 0.133
27 257008_at AT3G14210 ESM1, epithiospecifier modifier 1 -0.522 0.262
28 260116_at AT1G33960 AIG1, AVRRPT2-INDUCED GENE 1 -0.522 -0.129
29 259040_at AT3G09270 ATGSTU8, glutathione S-transferase TAU 8, GSTU8, glutathione S-transferase TAU 8 -0.490 -0.299
30 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 -0.347 -0.092
31 257540_at AT3G21520 AtDMP1, Arabidopsis thaliana DUF679 domain membrane protein 1, DMP1, DUF679 domain membrane protein 1 -0.342 0.117
32 266752_at AT2G47000 ABCB4, ATP-binding cassette B4, AtABCB4, ATPGP4, ARABIDOPSIS P-GLYCOPROTEIN 4, MDR4, MULTIDRUG RESISTANCE 4, PGP4, P-GLYCOPROTEIN 4 -0.336 -0.045
33 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 -0.335 -0.054
34 256012_at AT1G19250 FMO1, flavin-dependent monooxygenase 1 -0.324 -0.389
35 256647_at AT3G13610 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein -0.309 -0.995
36 261763_at AT1G15520 ABCG40, ATP-binding cassette G40, ATABCG40, Arabidopsis thaliana ATP-binding cassette G40, ATPDR12, PLEIOTROPIC DRUG RESISTANCE 12, PDR12, pleiotropic drug resistance 12 -0.297 0.942
37 258663_at AT3G08670 unknown -0.294 0.022
38 252068_at AT3G51440 [Calcium-dependent phosphotriesterase superfamily protein] -0.280 0.114
39 267567_at AT2G30770 CYP71A13, cytochrome P450, family 71, subfamily A, polypeptide 13 -0.267 -0.023
40 258638_at AT3G07950 [rhomboid protein-related] -0.265 -0.241
41 247293_at AT5G64510 TIN1, tunicamycin induced 1 -0.249 0.754
42 257978_at AT3G20860 ATNEK5, NIMA-related kinase 5, NEK5, NIMA-related kinase 5 -0.247 0.104
43 264211_at AT1G22770 FB, GI, GIGANTEA -0.241 -0.030