4.0:Information of module
long 8-degree-
In comparison with Total RNA csp1 cold help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010264 myo-inositol hexakisphosphate biosynthet... BP 3.940e-10
GO:0033517 myo-inositol hexakisphosphate metabolic ... BP 3.940e-10
GO:0032958 inositol phosphate biosynthetic process BP 5.661e-10
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009628 response to abiotic stimulus BP 3.889e-08
GO:0006091 generation of precursor metabolites and ... BP 2.951e-06
GO:0015996 chlorophyll catabolic process BP 4.713e-06
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
long 8-degree-		 Log2 signal ratio
Total RNA csp1 cold
1 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN 0.995 0.564
2 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.895 0.245
3 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 0.819 0.725
4 254818_at AT4G12470 AZI1, azelaic acid induced 1 0.800 1.011
5 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] 0.784 0.810
6 248467_at AT5G50800 AtSWEET13, SWEET13 0.708 0.285
7 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.644 1.186
8 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE 0.615 0.518
9 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.588 0.524
10 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 0.581 0.697
11 260727_at AT1G48100 [Pectin lyase-like superfamily protein] 0.515 0.784
12 247739_at AT5G59240 [Ribosomal protein S8e family protein] 0.382 0.383
13 256924_at AT3G29590 AT5MAT 0.374 0.025
14 245624_at AT4G14090 [UDP-Glycosyltransferase superfamily protein] 0.353 -0.267
15 251090_at AT5G01340 AtmSFC1, mSFC1, mitochondrial succinate-fumarate carrier 1 0.339 0.268
16 245628_at AT1G56650 ATMYB75, MYB DOMAIN PROTEIN 75, MYB75, MYELOBLASTOSIS PROTEIN 75, PAP1, production of anthocyanin pigment 1, SIAA1, SUC-INDUCED ANTHOCYANIN ACCUMULATION 1 0.326 -0.526
17 265093_at AT1G03905 ABCI19, ATP-binding cassette I19 0.326 0.479
18 250992_at AT5G02260 ATEXP9, ATEXPA9, expansin A9, ATHEXP ALPHA 1.10, EXP9, EXPA9, expansin A9 0.325 0.248
19 265999_at AT2G24100 ASG1, ALTERED SEED GERMINATION 1 0.324 0.630
20 260903_at AT1G02460 [Pectin lyase-like superfamily protein] 0.313 0.555
21 261335_at AT1G44800 SIAR1, Siliques Are Red 1, UMAMIT18, Usually multiple acids move in and out Transporters 18 0.312 0.521
22 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 0.297 -0.044
23 249215_at AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 0.291 -0.283
24 248185_at AT5G54060 UF3GT, UDP-glucose:flavonoid 3-o-glucosyltransferase, UGT79B1, UDP-glucosyl transferase 79B1 0.284 -0.201
25 249645_at AT5G36910 THI2.2, thionin 2.2 0.279 0.081
26 251668_at AT3G57010 [Calcium-dependent phosphotriesterase superfamily protein] 0.277 0.095
27 254543_at AT4G19810 ChiC, class V chitinase 0.268 0.467
28 265962_at AT2G37460 UMAMIT12, Usually multiple acids move in and out Transporters 12 0.265 0.140
29 257237_at AT3G14890 [phosphoesterase] 0.263 0.524
30 256751_at AT3G27170 ATCLC-B, CLC-B, chloride channel B 0.258 0.868
31 245367_at AT4G16265 NRPB9B, NRPD9B, NRPE9B 0.256 0.056
32 253252_at AT4G34740 ASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2, ATASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2, ATPURF2, CIA1, CHLOROPLAST IMPORT APPARATUS 1, DOV1, DIFFERENTIAL DEVELOPMENT OF VASCULAR ASSOCIATED CELLS 0.249 0.378
33 247232_at AT5G64940 ATATH13, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ATH13, ABC2 homolog 13, ATOSA1, A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, OSA1, OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1 0.246 0.142
34 262136_at AT1G77850 ARF17, auxin response factor 17 0.241 0.401
35 251928_at AT3G53980 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.235 0.047
36 259275_at AT3G01060 unknown 0.232 0.311
37 262875_at AT1G64970 G-TMT, gamma-tocopherol methyltransferase, TMT1, VTE4, VITAMIN E DEFICIENT 4 0.231 -0.006
38 254043_at AT4G25990 CIL 0.227 0.763
39 265842_at AT2G35700 ATERF38, ERF FAMILY PROTEIN 38, ERF38, ERF family protein 38 0.225 0.304
40 257252_at AT3G24170 ATGR1, glutathione-disulfide reductase, GR1, glutathione-disulfide reductase 0.224 0.148
41 257253_at AT3G24190 [Protein kinase superfamily protein] 0.219 0.105
42 247776_at AT5G58700 ATPLC4, PLC4, phosphatidylinositol-speciwc phospholipase C4 0.215 0.392
43 263805_at AT2G40400 unknown 0.212 0.261
44 250971_at AT5G02810 APRR7, PRR7, pseudo-response regulator 7 0.212 0.742
45 264767_at AT1G61380 SD1-29, S-domain-1 29 0.212 0.462
46 252412_at AT3G47295 unknown 0.211 0.186
47 260025_at AT1G30070 [SGS domain-containing protein] 0.210 0.136
48 250758_at AT5G06000 ATEIF3G2, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITIATION FACTOR 3G2, EIF3G2, eukaryotic translation initiation factor 3G2 0.208 0.335
49 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 0.205 0.216
50 245936_at AT5G19850 [alpha/beta-Hydrolases superfamily protein] 0.204 0.056
51 252997_at AT4G38400 ATEXLA2, expansin-like A2, ATEXPL2, ATHEXP BETA 2.2, EXLA2, expansin-like A2, EXPL2, EXPANSIN L2 0.203 0.382
52 246554_at AT5G15450 APG6, ALBINO AND PALE GREEN 6, AtCLPB3, CLPB-P, CASEIN LYTIC PROTEINASE B-P, CLPB3, casein lytic proteinase B3 0.203 0.131
53 265768_at AT2G48020 [Major facilitator superfamily protein] 0.202 0.212
54 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 0.201 -0.552
55 264057_at AT2G28550 RAP2.7, related to AP2.7, TOE1, TARGET OF EARLY ACTIVATION TAGGED (EAT) 1 0.199 0.219
56 260308_at AT1G70610 ABCB26, ATP-binding cassette B26, ATTAP1, transporter associated with antigen processing protein 1, TAP1, transporter associated with antigen processing protein 1 0.198 0.119
57 254054_at AT4G25320 AHL3, AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3 0.197 0.237
58 256020_at AT1G58290 AtHEMA1, Arabidopsis thaliana hemA 1, HEMA1 0.195 0.264
59 246566_at AT5G14940 [Major facilitator superfamily protein] 0.193 0.381
60 256049_at AT1G07010 AtSLP1, SLP1, Shewenella-like protein phosphatase 1 0.188 0.077
61 258056_at AT3G29010 [Biotin/lipoate A/B protein ligase family] 0.179 0.145
62 260075_at AT1G73700 [MATE efflux family protein] 0.178 -0.023
63 253824_at AT4G27940 ATMTM1, ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, MTM1, manganese tracking factor for mitochondrial SOD2 0.177 0.188
64 264941_at AT1G60680 [NAD(P)-linked oxidoreductase superfamily protein] 0.176 0.046
65 264824_at AT1G03420 Sadhu4-2, sadhu non-coding retrotransposon 4-2 0.175 0.037
66 260221_at AT1G74670 GASA6, GA-stimulated Arabidopsis 6 -0.866 -0.050
67 249775_at AT5G24160 SQE6, squalene monoxygenase 6 -0.647 -0.451
68 266357_at AT2G32290 BAM6, beta-amylase 6, BMY5, BETA-AMYLASE 5 -0.601 -0.758
69 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.598 -0.131
70 245275_at AT4G15210 AT-BETA-AMY, ATBETA-AMY, ARABIDOPSIS THALIANA BETA-AMYLASE, BAM5, beta-amylase 5, BMY1, RAM1, REDUCED BETA AMYLASE 1 -0.489 -0.819
71 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.436 -0.089
72 245637_at AT1G25230 [Calcineurin-like metallo-phosphoesterase superfamily protein] -0.401 -0.006
73 256096_at AT1G13650 unknown -0.396 -0.403
74 264507_at AT1G09415 NIMIN-3, NIM1-interacting 3 -0.390 -0.343
75 258468_at AT3G06070 unknown -0.386 0.243
76 253697_at AT4G29700 [Alkaline-phosphatase-like family protein] -0.362 -0.489
77 252114_at AT3G51450 [Calcium-dependent phosphotriesterase superfamily protein] -0.361 -0.360
78 260983_at AT1G53560 [Ribosomal protein L18ae family] -0.356 -0.211
79 259104_at AT3G02170 LNG2, LONGIFOLIA2, TRM1, TON1 Recruiting Motif 1 -0.353 -0.217
80 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 -0.353 0.082
81 246114_at AT5G20250 DIN10, DARK INDUCIBLE 10, RS6, raffinose synthase 6 -0.352 0.344
82 261086_at AT1G17460 TRFL3, TRF-like 3 -0.334 -0.042
83 264100_at AT1G78970 ATLUP1, ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, LUP1, lupeol synthase 1 -0.327 -0.221
84 258063_at AT3G14620 CYP72A8, cytochrome P450, family 72, subfamily A, polypeptide 8 -0.325 -0.659
85 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 -0.322 -0.048
86 254553_at AT4G19530 [disease resistance protein (TIR-NBS-LRR class) family] -0.318 -0.170
87 267083_at AT2G41100 ATCAL4, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, TCH3, TOUCH 3 -0.313 0.001
88 262236_at AT1G48330 unknown -0.312 -0.462
89 267425_at AT2G34810 [FAD-binding Berberine family protein] -0.307 -0.529
90 249439_at AT5G40020 [Pathogenesis-related thaumatin superfamily protein] -0.300 -0.212
91 267336_at AT2G19310 [HSP20-like chaperones superfamily protein] -0.300 -0.433
92 252529_at AT3G46490 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.275 -0.089
93 265902_at AT2G25590 [Plant Tudor-like protein] -0.275 -0.291
94 247293_at AT5G64510 TIN1, tunicamycin induced 1 -0.271 -0.593
95 249777_at AT5G24210 [alpha/beta-Hydrolases superfamily protein] -0.269 -0.234
96 249895_at AT5G22500 FAR1, fatty acid reductase 1 -0.259 0.415
97 256226_at AT1G56280 ATDI19, drought-induced 19, DI19, drought-induced 19 -0.257 -0.074
98 262607_at AT1G13990 unknown -0.256 -0.153
99 258609_at AT3G02910 [AIG2-like (avirulence induced gene) family protein] -0.251 -0.236
100 250751_at AT5G05890 [UDP-Glycosyltransferase superfamily protein] -0.248 -0.110
101 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 -0.239 -0.036
102 262698_at AT1G75960 [AMP-dependent synthetase and ligase family protein] -0.234 0.155
103 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 -0.232 -0.155
104 246462_at AT5G16940 [carbon-sulfur lyases] -0.230 -0.228
105 254110_at AT4G25260 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.225 -0.049
106 266781_at AT2G28940 [Protein kinase superfamily protein] -0.223 -0.240
107 261016_at AT1G26560 BGLU40, beta glucosidase 40 -0.223 -0.318
108 247540_at AT5G61590 [Integrase-type DNA-binding superfamily protein] -0.218 0.291
109 246962_s_at AT5G24800 ATBZIP9, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, BZIP9, basic leucine zipper 9, BZO2H2, BASIC LEUCINE ZIPPER O2 HOMOLOG 2 -0.215 -0.226
110 249008_at AT5G44680 [DNA glycosylase superfamily protein] -0.209 -0.001
111 252011_at AT3G52720 ACA1, alpha carbonic anhydrase 1, ATACA1, A. THALIANA ALPHA CARBONIC ANHYDRASE 1, CAH1, CARBONIC ANHYDRASE 1 -0.208 -0.407
112 260254_at AT1G74210 AtGDPD5, GDPD5, glycerophosphodiester phosphodiesterase 5 -0.206 -0.275
113 258037_at AT3G21230 4CL5, 4-coumarate:CoA ligase 5 -0.204 -0.306
114 249072_at AT5G44060 unknown -0.199 -0.437
115 246917_at AT5G25280 [serine-rich protein-related] -0.198 -0.036
116 253971_at AT4G26530 AtFBA5, FBA5, fructose-bisphosphate aldolase 5 -0.198 -0.037
117 258375_at AT3G17470 ATCRSH, CRSH, Ca2+-activated RelA/spot homolog -0.195 -0.210
118 259924_at AT1G72740 [Homeodomain-like/winged-helix DNA-binding family protein] -0.195 -0.043
119 245524_at AT4G15920 AtSWEET17, SWEET17 -0.193 0.016
120 251704_at AT3G56360 unknown -0.193 -0.248
121 262232_at AT1G68600 [Aluminium activated malate transporter family protein] -0.193 -0.602
122 249408_at AT5G40330 ATMYB23, MYB DOMAIN PROTEIN 23, ATMYBRTF, MYB23, myb domain protein 23 -0.192 -0.026
123 248905_at AT5G46250 AtLARP6a, LARP6a, La related protein 6a -0.191 -0.047
124 257868_at AT3G25070 RIN4, RPM1 interacting protein 4 -0.190 -0.165
125 262871_at AT1G65010 [INVOLVED IN: flower development] -0.186 -0.283
126 263668_at AT1G04350 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.186 -0.111
127 266707_at AT2G03310 unknown -0.183 -0.174
128 259383_at AT3G16470 JAL35, jacalin-related lectin 35, JR1, JASMONATE RESPONSIVE 1 -0.180 -0.089
129 246012_at AT5G10650 [RING/U-box superfamily protein] -0.179 -0.228
130 259629_at AT1G56510 ADR2, ACTIVATED DISEASE RESISTANCE 2, WRR4, WHITE RUST RESISTANCE 4 -0.176 -0.180