4.0:Information of module
mkk2 control rep
In comparison with Col-0 shade help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901575 organic substance catabolic process BP 2.859e-13
GO:0044723 single-organism carbohydrate metabolic p... BP 6.605e-13
GO:0005975 carbohydrate metabolic process BP 8.823e-13
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009963 positive regulation of flavonoid biosynt... BP 3.694e-04
GO:0009962 regulation of flavonoid biosynthetic pro... BP 8.587e-04
GO:0048583 regulation of response to stimulus BP 1.940e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
mkk2 control rep		 Log2 signal ratio
Col-0 shade
1 245668_at AT1G28330 AtDRM1, DRM1, DORMANCY-ASSOCIATED PROTEIN 1, DYL1, dormancy-associated protein-like 1 0.461 0.063
2 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 0.442 0.675
3 247348_at AT5G63810 AtBGAL10, Arabidopsis thaliana beta-galactosidase 10, BGAL10, beta-galactosidase 10 0.414 -0.014
4 250657_at AT5G07000 ATST2B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, ST2B, sulfotransferase 2B 0.332 0.318
5 267034_at AT2G38310 PYL4, PYR1-like 4, RCAR10, regulatory components of ABA receptor 10 0.320 0.001
6 245227_s_at AT1G08410 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.290 -0.038
7 261292_at AT1G36940 unknown 0.286 0.166
8 247786_at AT5G58600 PMR5, POWDERY MILDEW RESISTANT 5, TBL44, TRICHOME BIREFRINGENCE-LIKE 44 0.279 0.012
9 263319_at AT2G47160 AtBOR1, BOR1, REQUIRES HIGH BORON 1 0.279 0.094
10 253908_at AT4G27260 GH3.5, WES1 0.266 0.153
11 249073_at AT5G44020 [HAD superfamily, subfamily IIIB acid phosphatase ] 0.259 -0.003
12 264508_at AT1G09570 FHY2, FAR RED ELONGATED HYPOCOTYL 2, FRE1, FAR RED ELONGATED 1, HY8, ELONGATED HYPOCOTYL 8, PHYA, phytochrome A 0.259 0.078
13 250134_at AT5G16505 MUG4, MUSTANG 4 0.258 -0.002
14 256244_at AT3G12520 SULTR4;2, sulfate transporter 4;2 0.251 -0.033
15 261727_at AT1G76090 SMT3, sterol methyltransferase 3 0.245 0.064
16 251629_at AT3G57410 ATVLN3, VLN3, villin 3 0.242 -0.008
17 247183_at AT5G65440 unknown 0.241 0.001
18 267532_at AT2G42040 unknown 0.238 0.053
19 250223_at AT5G14070 ROXY2 0.235 0.050
20 264045_at AT2G22450 AtRIBA2, RIBA2, homolog of ribA 2 0.228 0.025
21 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.228 -0.164
22 247611_at AT5G60710 [Zinc finger (C3HC4-type RING finger) family protein] 0.228 0.003
23 261611_at AT1G49730 [Protein kinase superfamily protein] 0.226 0.128
24 247087_at AT5G66330 [Leucine-rich repeat (LRR) family protein] 0.224 0.094
25 258983_at AT3G08860 PYD4, PYRIMIDINE 4 0.220 -0.037
26 264496_at AT1G27285 [copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)] 0.217 0.032
27 259182_at AT3G01750 [Ankyrin repeat family protein] 0.217 -0.028
28 250254_at AT5G13710 CPH, CEPHALOPOD, SMT1, sterol methyltransferase 1 0.216 -0.007
29 257667_at AT3G20440 BE1, BRANCHING ENZYME 1, EMB2729, EMBRYO DEFECTIVE 2729 0.212 0.015
30 266054_at AT2G40640 [RING/U-box superfamily protein] 0.211 0.069
31 260988_at AT1G53570 MAP3KA, mitogen-activated protein kinase kinase kinase 3, MAPKKK3, MAP KINASE KINASE KINASE 3 0.210 -0.027
32 264449_at AT1G27460 NPGR1, no pollen germination related 1 0.209 0.027
33 245789_at AT1G32090 [early-responsive to dehydration stress protein (ERD4)] 0.207 -0.008
34 262070_at AT1G80010 FRS8, FAR1-related sequence 8 0.207 0.009
35 259259_at AT3G11540 SPY, SPINDLY 0.205 0.002
36 262297_at AT1G27600 I9H, IRREGULAR XYLEM 9 Homolog, IRX9-L, IRREGULAR XYLEM 9-LIKE 0.204 -0.011
37 254548_at AT4G19865 [Galactose oxidase/kelch repeat superfamily protein] 0.197 -0.034
38 249702_at AT5G35570 [O-fucosyltransferase family protein] 0.197 -0.044
39 247123_at AT5G66050 [Wound-responsive family protein] 0.197 0.020
40 255402_at AT4G03205 hemf2 0.197 0.062
41 251427_at AT3G60130 BGLU16, beta glucosidase 16 0.197 0.003
42 249345_at AT5G40740 AUG6, augmin subunit 6 0.197 0.005
43 254610_at AT4G18890 BEH3, BES1/BZR1 homolog 3 0.196 -0.001
44 258698_at AT3G09690 [alpha/beta-Hydrolases superfamily protein] 0.195 0.006
45 258556_at AT3G07020 SGT, sterol glucosyltransferase, UGT80A2, UDP-glucosyl transferase 80A2 0.193 0.015
46 251700_at AT3G56640 SEC15A, exocyst complex component sec15A 0.191 -0.031
47 265395_at AT2G20850 SRF1, STRUBBELIG-receptor family 1 0.191 -0.029
48 267580_at AT2G41990 unknown 0.184 -0.014
49 257547_at AT3G13000 unknown 0.184 0.033
50 260190_at AT1G67560 ATLOX6, Arabidopsis thaliana lipoxygenase 6, LOX6, lipoxygenase 6 0.184 -0.008
51 262850_at AT1G14920 GAI, GIBBERELLIC ACID INSENSITIVE, RGA2, RESTORATION ON GROWTH ON AMMONIA 2 0.183 0.147
52 256570_at AT3G19540 unknown 0.182 0.026
53 245116_at AT2G41620 [Nucleoporin interacting component (Nup93/Nic96-like) family protein] 0.182 0.023
54 261435_at AT1G07615 [GTP-binding protein Obg/CgtA] 0.179 0.007
55 256697_at AT3G20660 AtOCT4, organic cation/carnitine transporter4, OCT4, organic cation/carnitine transporter4 0.174 0.088
56 246317_at AT3G56900 [Transducin/WD40 repeat-like superfamily protein] 0.173 -0.004
57 260928_at AT1G02720 AtGATL5, GATL5, galacturonosyltransferase-like 5 0.173 0.031
58 259982_at AT1G76410 ATL8 0.173 0.060
59 257553_at AT3G16830 TPR2, TOPLESS-related 2 0.170 0.004
60 245947_at AT5G19530 ACL5, ACAULIS 5 0.169 0.026
61 266839_at AT2G25930 ELF3, EARLY FLOWERING 3, PYK20 0.166 -0.005
62 263751_at AT2G21300 [ATP binding microtubule motor family protein] 0.164 -0.015
63 266407_at AT2G38560 RDO2, REDUCED DORMANCY 2, TFIIS, transcript elongation factor IIS 0.162 0.024
64 266905_at AT2G34560 AtCCP1, CCP1, conserved in ciliated species and in the land plants 1 0.161 0.019
65 259005_at AT3G01930 [Major facilitator superfamily protein] 0.161 0.026
66 254124_at AT4G24500 SIC, SICKLE 0.161 0.012
67 263975_at AT2G42710 [Ribosomal protein L1p/L10e family] 0.161 0.002
68 253887_at AT4G27730 ATOPT6, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, OPT6, oligopeptide transporter 1 0.158 0.030
69 255258_at AT4G05060 [PapD-like superfamily protein] 0.157 0.022
70 247924_at AT5G57655 [xylose isomerase family protein] 0.157 0.042
71 257052_at AT3G15290 [3-hydroxyacyl-CoA dehydrogenase family protein] 0.157 0.041
72 259958_at AT1G53730 SRF6, STRUBBELIG-receptor family 6 0.156 0.029
73 258132_at AT3G24550 ATPERK1, proline-rich extensin-like receptor kinase 1, PERK1, proline-rich extensin-like receptor kinase 1 0.156 0.017
74 262333_at AT1G64020 [Serine protease inhibitor (SERPIN) family protein] 0.156 0.007
75 267208_at AT2G30980 ASKdZeta, SHAGGY-related protein kinase dZeta, ATSK2-2, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 2, ATSK23, SHAGGY-LIKE PROTEIN KINASE 23, BIL1, BIN2-LIKE 1, SKdZeta, SHAGGY-related protein kinase dZeta 0.156 -0.010
76 266108_at AT2G37900 [Major facilitator superfamily protein] 0.154 0.037
77 245951_at AT5G19550 AAT2, ASPARTATE AMINOTRANSFERASE 2, ASP2, aspartate aminotransferase 2 0.154 -0.008
78 256232_at AT3G12570 FYD 0.154 0.011
79 261800_at AT1G30490 ATHB9, PHV, PHAVOLUTA 0.153 0.004
80 248612_at AT5G49530 [SIN-like family protein] 0.153 -0.027
81 264197_at AT1G22620 ATSAC1, suppressor of actin 1 0.152 -0.010
82 265665_at AT2G27420 [Cysteine proteinases superfamily protein] -0.823 -0.264
83 258653_at AT3G09870 SAUR48, SMALL AUXIN UPREGULATED RNA 48 -0.798 0.046
84 256379_at AT1G66840 PMI2, plastid movement impaired 2, WEB2, WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2 -0.705 -0.111
85 248246_at AT5G53200 TRY, TRIPTYCHON -0.696 -0.093
86 260773_at AT1G78440 ATGA2OX1, Arabidopsis thaliana gibberellin 2-oxidase 1, GA2OX1, gibberellin 2-oxidase 1 -0.695 0.030
87 258349_at AT3G17609 HYH, HY5-homolog -0.667 -0.090
88 253859_at AT4G27657 unknown -0.658 -0.030
89 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 -0.629 -0.196
90 248164_at AT5G54490 PBP1, pinoid-binding protein 1 -0.612 0.204
91 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.589 -0.059
92 259850_at AT1G72240 unknown -0.584 0.084
93 250485_at AT5G09990 PROPEP5, elicitor peptide 5 precursor -0.580 0.005
94 263545_at AT2G21560 unknown -0.570 -0.070
95 258315_at AT3G16175 [Thioesterase superfamily protein] -0.543 -0.085
96 257382_at AT2G40750 ATWRKY54, WRKY DNA-BINDING PROTEIN 54, WRKY54, WRKY DNA-binding protein 54 -0.542 -0.035
97 248799_at AT5G47230 ATERF-5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ATERF5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5, AtMACD1, ERF102, ERF5, ethylene responsive element binding factor 5 -0.527 -0.067
98 262137_at AT1G77920 TGA7, TGACG sequence-specific binding protein 7 -0.517 -0.061
99 258807_at AT3G04030 MYR2 -0.514 0.004
100 266357_at AT2G32290 BAM6, beta-amylase 6, BMY5, BETA-AMYLASE 5 -0.502 0.056
101 266372_at AT2G41310 ARR8, RESPONSE REGULATOR 8, ATRR3, response regulator 3, RR3, response regulator 3 -0.501 -0.063
102 260135_at AT1G66400 CML23, calmodulin like 23 -0.486 0.131
103 263829_at AT2G40435 unknown -0.451 -0.095
104 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 -0.435 -0.179
105 250408_at AT5G10930 CIPK5, CBL-interacting protein kinase 5, SnRK3.24, SNF1-RELATED PROTEIN KINASE 3.24 -0.435 -0.122
106 262811_at AT1G11700 unknown -0.404 -0.183
107 262871_at AT1G65010 [INVOLVED IN: flower development] -0.404 -0.042
108 264083_at AT2G31230 ATERF15, ethylene-responsive element binding factor 15, ERF15, ethylene-responsive element binding factor 15 -0.401 -0.043
109 249811_at AT5G23760 [Copper transport protein family] -0.399 -0.053
110 266327_at AT2G46680 ATHB-7, homeobox 7, ATHB7, ARABIDOPSIS THALIANA HOMEOBOX 7, HB-7, homeobox 7 -0.398 -0.068
111 245777_at AT1G73540 atnudt21, nudix hydrolase homolog 21, NUDT21, nudix hydrolase homolog 21 -0.392 0.185
112 260727_at AT1G48100 [Pectin lyase-like superfamily protein] -0.388 -0.132
113 257625_at AT3G26230 CYP71B24, cytochrome P450, family 71, subfamily B, polypeptide 24 -0.387 0.004
114 261776_at AT1G76190 SAUR56, SMALL AUXIN UPREGULATED RNA 56 -0.386 -0.042
115 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 -0.384 -0.131
116 263412_at AT2G28720 [Histone superfamily protein] -0.381 -0.113
117 262211_at AT1G74930 ORA47 -0.381 -0.049
118 247055_at AT5G66740 unknown -0.380 -0.129
119 257375_at AT2G38640 unknown -0.377 -0.024
120 261407_at AT1G18810 [phytochrome kinase substrate-related] -0.375 -0.115
121 252679_at AT3G44260 AtCAF1a, CCR4- associated factor 1a, CAF1a, CCR4- associated factor 1a -0.366 0.213
122 254145_at AT4G24700 unknown -0.365 -0.075
123 253646_at AT4G29810 ATMKK2, MAP kinase kinase 2, MK1, MAP KINASE KINASE 1, MKK2, MAP kinase kinase 2 -0.354 -0.002
124 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 -0.341 -0.132
125 262826_at AT1G13080 CYP71B2, cytochrome P450, family 71, subfamily B, polypeptide 2 -0.337 -0.071
126 259359_at AT1G13460 [Protein phosphatase 2A regulatory B subunit family protein] -0.332 -0.037
127 255028_at AT4G09890 unknown -0.331 0.141
128 252165_at AT3G50550 unknown -0.323 -0.002
129 247109_at AT5G65870 ATPSK5, phytosulfokine 5 precursor, PSK5, PSK5, phytosulfokine 5 precursor -0.322 -0.005
130 251418_at AT3G60440 [Phosphoglycerate mutase family protein] -0.319 -0.101
131 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 -0.319 0.193
132 252946_at AT4G39235 unknown -0.319 0.010
133 250722_at AT5G06190 unknown -0.318 0.021
134 254178_at AT4G23880 unknown -0.317 -0.003
135 257925_at AT3G23170 unknown -0.317 0.051
136 253254_at AT4G34650 SQS2, squalene synthase 2 -0.314 -0.050
137 266227_at AT2G28870 unknown -0.314 -0.035
138 249417_at AT5G39670 [Calcium-binding EF-hand family protein] -0.312 -0.040
139 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 -0.311 0.438
140 263296_at AT2G38800 [Plant calmodulin-binding protein-related] -0.308 0.003
141 256303_at AT1G69550 [disease resistance protein (TIR-NBS-LRR class)] -0.306 0.001
142 259760_at AT1G77580 unknown -0.305 -0.082
143 267148_at AT2G23470 RUS4, ROOT UV-B SENSITIVE 4 -0.302 -0.084
144 261832_at AT1G10650 [SBP (S-ribonuclease binding protein) family protein] -0.295 -0.043
145 264148_at AT1G02220 ANAC003, NAC domain containing protein 3, NAC003, NAC domain containing protein 3 -0.292 -0.076
146 249614_at AT5G37300 WSD1 -0.288 0.045
147 250161_at AT5G15240 [Transmembrane amino acid transporter family protein] -0.286 -0.032
148 256980_at AT3G26932 DRB3, dsRNA-binding protein 3 -0.286 -0.108
149 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 -0.285 0.026
150 248471_at AT5G50840 unknown -0.284 -0.031
151 258880_at AT3G06420 ATG8H, autophagy 8h -0.284 -0.028
152 251600_at AT3G57710 [Protein kinase superfamily protein] -0.284 -0.063
153 248777_at AT5G47920 unknown -0.283 -0.001
154 248378_at AT5G51840 unknown -0.281 0.012
155 257466_at AT1G62840 unknown -0.279 -0.005
156 266480_at AT2G31130 unknown -0.277 -0.008
157 265682_at AT2G24390 [AIG2-like (avirulence induced gene) family protein] -0.276 0.005
158 247957_at AT5G57050 ABI2, ABA INSENSITIVE 2, AtABI2 -0.275 -0.021
159 248344_at AT5G52280 [Myosin heavy chain-related protein] -0.274 -0.030
160 258084_at AT3G26020 [Protein phosphatase 2A regulatory B subunit family protein] -0.274 -0.068
161 255929_at AT1G12650 unknown -0.274 -0.003