4.0:Information of module
Root sol2
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0055114 oxidation-reduction process BP 1.455e-05
GO:0030001 metal ion transport BP 2.554e-04
GO:0035556 intracellular signal transduction BP 3.564e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0002684 positive regulation of immune system pro... BP 2.814e-03
GO:0050778 positive regulation of immune response BP 2.814e-03
GO:0002218 activation of innate immune response BP 7.772e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Root sol2		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 255257_at AT4G05050 UBQ11, ubiquitin 11 1.489 0.010
2 263023_at AT1G23960 unknown 0.899 -0.104
3 249185_at AT5G43030 [Cysteine/Histidine-rich C1 domain family protein] 0.873 0.039
4 264912_at AT1G60750 [NAD(P)-linked oxidoreductase superfamily protein] 0.872 -0.094
5 251895_at AT3G54420 ATCHITIV, CHITINASE CLASS IV, ATEP3, homolog of carrot EP3-3 chitinase, CHIV, EP3, homolog of carrot EP3-3 chitinase 0.858 -0.021
6 260584_at AT2G43660 [Carbohydrate-binding X8 domain superfamily protein] 0.852 -0.031
7 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.852 -0.635
8 247469_at AT5G62165 AGL42, AGAMOUS-like 42, FYF, FOREVER YOUNG FLOWER 0.831 0.002
9 249599_at AT5G37990 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.805 -0.031
10 245555_at AT4G15390 [HXXXD-type acyl-transferase family protein] 0.803 0.014
11 255546_at AT4G01910 [Cysteine/Histidine-rich C1 domain family protein] 0.795 0.120
12 252659_at AT3G44430 unknown 0.760 -0.070
13 250064_at AT5G17890 CHS3, CHILLING SENSITIVE 3, DAR4, DA1-related protein 4 0.753 -0.040
14 254836_at AT4G12330 CYP706A7, cytochrome P450, family 706, subfamily A, polypeptide 7 0.748 -0.117
15 258059_at AT3G29035 ANAC059, Arabidopsis NAC domain containing protein 59, ATNAC3, NAC domain containing protein 3, NAC3, NAC domain containing protein 3, ORS1, ORE1 SISTER1 0.732 -0.081
16 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.680 0.098
17 255547_at AT4G01920 [Cysteine/Histidine-rich C1 domain family protein] 0.674 0.047
18 258228_at AT3G27610 [Nucleotidylyl transferase superfamily protein] 0.661 0.115
19 249186_at AT5G43040 [Cysteine/Histidine-rich C1 domain family protein] 0.655 0.075
20 252684_at AT3G44400 [Disease resistance protein (TIR-NBS-LRR class) family] 0.647 0.083
21 261879_at AT1G50520 CYP705A27, cytochrome P450, family 705, subfamily A, polypeptide 27 0.643 0.116
22 267083_at AT2G41100 ATCAL4, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, TCH3, TOUCH 3 0.632 0.187
23 266851_at AT2G26820 ATPP2-A3, phloem protein 2-A3, PP2-A3, phloem protein 2-A3 0.593 -0.052
24 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.593 -0.048
25 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 0.586 -0.092
26 255044_at AT4G09680 ATCTC1, CTC1, conserved telomere maintenance component 1 0.580 -0.020
27 248212_at AT5G54020 [Cysteine/Histidine-rich C1 domain family protein] 0.557 -0.033
28 255484_at AT4G02540 [Cysteine/Histidine-rich C1 domain family protein] 0.548 -0.132
29 248183_at AT5G54040 [Cysteine/Histidine-rich C1 domain family protein] 0.528 0.026
30 248079_at AT5G55790 unknown 0.515 0.028
31 246888_at AT5G26270 unknown 0.513 0.099
32 247477_at AT5G62340 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.502 0.098
33 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 0.502 -0.202
34 252703_at AT3G43740 [Leucine-rich repeat (LRR) family protein] 0.500 -0.026
35 259529_at AT1G12400 [Nucleotide excision repair, TFIIH, subunit TTDA] 0.500 -0.218
36 256764_at AT3G29310 [calmodulin-binding protein-related] 0.500 0.151
37 249019_at AT5G44780 MORF4, multiple organellar RNA editing factor 4 0.474 0.013
38 255181_at AT4G08110 [CACTA-like transposase family (Ptta/En/Spm), has a 4.2e-66 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.470 0.125
39 260549_at AT2G43535 [Scorpion toxin-like knottin superfamily protein] 0.465 0.087
40 249814_at AT5G23840 [MD-2-related lipid recognition domain-containing protein] 0.464 -0.129
41 248916_at AT5G45840 [Leucine-rich repeat protein kinase family protein] 0.450 -0.054
42 252700_at AT3G43690 [copia-like retrotransposon family protein, has a 1.4e-29 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] 0.440 0.037
43 247345_at AT5G63760 ARI15, ARIADNE 15, ATARI15, ARABIDOPSIS ARIADNE 15 0.427 -0.085
44 257272_at AT3G28130 UMAMIT44, Usually multiple acids move in and out Transporters 44 0.418 0.061
45 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 -0.923 0.084
46 263198_at AT1G53990 GLIP3, GDSL-motif lipase 3 -0.849 -0.087
47 256531_at AT1G33320 [Pyridoxal phosphate (PLP)-dependent transferases superfamily protein] -0.817 -0.198
48 260893_at AT1G29180 [Cysteine/Histidine-rich C1 domain family protein] -0.790 0.069
49 249970_at AT5G19100 [Eukaryotic aspartyl protease family protein] -0.754 0.085
50 262598_at AT1G15260 unknown -0.603 -0.096
51 261684_at AT1G47400 unknown -0.572 -0.201
52 245245_at AT1G44318 hemb2 -0.558 0.059
53 249773_at AT5G24140 SQP2, squalene monooxygenase 2 -0.546 -0.007
54 251346_at AT3G60980 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.529 -0.177
55 249603_at AT5G37210 [Cysteine/Histidine-rich C1 domain family protein] -0.487 -0.070
56 252612_at AT3G45160 [Putative membrane lipoprotein] -0.483 0.102
57 245215_at AT1G67830 ATFXG1, Arabidopsis thaliana alpha-fucosidase 1, FXG1, alpha-fucosidase 1 -0.432 0.214
58 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] -0.390 0.012
59 247536_at AT5G61650 CYCP4, CYCP4;2, CYCLIN P4;2 -0.380 -0.050
60 249493_at AT5G39080 [HXXXD-type acyl-transferase family protein] -0.378 -0.022
61 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] -0.364 0.012
62 264077_at AT2G28560 ATRAD51B, RAD51B -0.356 0.154
63 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 -0.327 -0.033
64 245767_at AT1G33612 [Leucine-rich repeat (LRR) family protein] -0.293 -0.101
65 255565_at AT4G01760 [Cysteine/Histidine-rich C1 domain family protein] -0.277 -0.138
66 248164_at AT5G54490 PBP1, pinoid-binding protein 1 -0.271 0.073
67 258629_at AT3G02850 SKOR, STELAR K+ outward rectifier -0.268 -0.155
68 255886_at AT1G20340 DRT112, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, PETE2, PLASTOCYANIN 2 -0.254 0.330
69 249903_at AT5G22690 [Disease resistance protein (TIR-NBS-LRR class) family] -0.252 0.008
70 262789_at AT1G10810 [NAD(P)-linked oxidoreductase superfamily protein] -0.250 -0.138
71 262821_at AT1G11800 [endonuclease/exonuclease/phosphatase family protein] -0.238 -0.075
72 246335_at AT3G44880 ACD1, ACCELERATED CELL DEATH 1, LLS1, LETHAL LEAF-SPOT 1 HOMOLOG, PAO, PHEOPHORBIDE A OXYGENASE -0.228 -0.086
73 250558_at AT5G07990 CYP75B1, CYTOCHROME P450 75B1, D501, TT7, TRANSPARENT TESTA 7 -0.227 -0.086
74 265265_at AT2G42900 [Plant basic secretory protein (BSP) family protein] -0.220 0.236
75 246326_at AT1G16590 ATREV7, REV7 -0.217 0.044
76 266276_at AT2G29330 TRI, tropinone reductase -0.202 0.228
77 252692_at AT3G43960 [Cysteine proteinases superfamily protein] -0.197 -0.192
78 250068_at AT5G17960 [Cysteine/Histidine-rich C1 domain family protein] -0.181 0.094
79 254857_at AT4G12120 ATSEC1B, SEC1B -0.173 0.154
80 256980_at AT3G26932 DRB3, dsRNA-binding protein 3 -0.170 -0.023
81 262261_at AT1G70895 CLE17, CLAVATA3/ESR-RELATED 17 -0.169 -0.205
82 250049_at AT5G17780 [alpha/beta-Hydrolases superfamily protein] -0.163 0.147
83 246371_at AT1G51940 LYK3, LysM-containing receptor-like kinase 3 -0.162 0.040
84 262510_at AT1G11270 [F-box and associated interaction domains-containing protein] -0.162 0.085
85 255413_at AT4G03140 [NAD(P)-binding Rossmann-fold superfamily protein] -0.161 -0.016
86 262605_at AT1G15170 [MATE efflux family protein] -0.160 0.176
87 264312_at AT1G70450 [Protein kinase superfamily protein] -0.154 0.012