4.0:Information of module
root - 08% oxygen - 30min
In comparison with root cells cortex 140mM NaCl 32 hours help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001666 response to hypoxia BP 3.762e-12
GO:0036293 response to decreased oxygen levels BP 5.397e-12
GO:0070482 response to oxygen levels BP 6.429e-12
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010030 positive regulation of seed germination BP 4.397e-02
GO:0006904 vesicle docking involved in exocytosis BP 5.176e-02
GO:0048278 vesicle docking BP 5.176e-02
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root - 08% oxygen - 30min		 Log2 signal ratio
root cells cortex 140mM NaCl 32 hours
1 255807_at AT4G10270 [Wound-responsive family protein] 0.897 0.639
2 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] 0.887 0.276
3 253298_at AT4G33560 [Wound-responsive family protein] 0.688 0.228
4 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 0.677 0.423
5 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.521 0.585
6 250464_at AT5G10040 unknown 0.506 0.554
7 250152_at AT5G15120 unknown 0.487 0.413
8 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 0.464 -0.278
9 247431_at AT5G62520 SRO5, similar to RCD one 5 0.397 -0.127
10 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.395 0.135
11 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.354 0.269
12 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] 0.244 0.812
13 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 0.211 0.059
14 253874_at AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] 0.205 0.302
15 263850_at AT2G04480 unknown 0.185 0.008
16 257925_at AT3G23170 unknown 0.179 0.180
17 245998_at AT5G20830 ASUS1, atsus1, SUS1, sucrose synthase 1 0.175 0.332
18 248138_at AT5G54960 PDC2, pyruvate decarboxylase-2 0.111 -0.027
19 267483_at AT2G02810 ATUTR1, UDP-GALACTOSE TRANSPORTER 1, UTR1, UDP-galactose transporter 1 0.111 -0.266
20 253404_at AT4G32840 PFK6, phosphofructokinase 6 0.105 0.123
21 249260_at AT5G41680 [Protein kinase superfamily protein] 0.102 0.023
22 258493_at AT3G02555 unknown 0.100 0.043
23 252083_at AT3G51960 ATBZIP24, basic leucine zipper 24, BZIP24, basic leucine zipper 24 0.096 -0.122
24 266919_at AT2G45780 other RNA 0.093 -0.042
25 251664_at AT3G56940 ACSF, CHL27, CRD1, COPPER RESPONSE DEFECT 1 -0.168 -0.126
26 255078_at AT4G09010 APX4, ascorbate peroxidase 4, TL29, thylakoid lumen 29 -0.164 -0.215
27 256577_at AT3G28220 [TRAF-like family protein] -0.111 -0.021
28 254837_at AT4G12360 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.108 -0.050
29 263194_at AT1G36060 [Integrase-type DNA-binding superfamily protein] -0.086 -0.105
30 257692_at AT3G12840 unknown -0.082 -0.054
31 248185_at AT5G54060 UF3GT, UDP-glucose:flavonoid 3-o-glucosyltransferase, UGT79B1, UDP-glucosyl transferase 79B1 -0.082 -0.078
32 249981_at AT5G18510 [Aminotransferase-like, plant mobile domain family protein] -0.081 -0.067
33 265282_at AT2G20380 [Galactose oxidase/kelch repeat superfamily protein] -0.080 -0.102
34 245705_at AT5G04390 [C2H2-type zinc finger family protein] -0.077 -0.089
35 247420_at AT5G63100 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.077 -0.059
36 267566_at AT2G30760 unknown -0.073 -0.045
37 260748_at AT1G49210 [RING/U-box superfamily protein] -0.073 -0.123
38 245782_at AT1G35200 [pseudogene] -0.073 0.082
39 252212_at AT3G50310 MAPKKK20, mitogen-activated protein kinase kinase kinase 20, MKKK20, MAPKK kinase 20 -0.071 0.364
40 245161_at AT2G33070 ATNSP2, NITRILE-SPECIFIER PROTEIN 2, NSP2, nitrile specifier protein 2 -0.069 -0.083
41 256603_at AT3G28270 unknown -0.069 -0.093
42 248667_at AT5G48710 [Ubiquitin-like superfamily protein] -0.068 -0.006
43 260163_at AT1G79900 ATMBAC2, RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, BAC2 -0.065 -0.035
44 254983_at AT4G10560 MEE53, maternal effect embryo arrest 53 -0.065 -0.098
45 245507_at AT4G15710 unknown -0.062 -0.050
46 254588_at AT4G18840 [Pentatricopeptide repeat (PPR-like) superfamily protein] -0.062 0.006
47 254132_at AT4G24660 ATHB22, HOMEOBOX PROTEIN 22, HB22, homeobox protein 22, MEE68, MATERNAL EFFECT EMBRYO ARREST 68, ZHD2, ZINC FINGER HOMEODOMAIN 2 -0.062 -0.247