4.0:Information of module
root - 08% oxygen - 2h
In comparison with cat2-2; harvested 8h continiously maintained in high CO2; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0036293 response to decreased oxygen levels BP 1.884e-20
GO:0070482 response to oxygen levels BP 1.884e-20
GO:0001666 response to hypoxia BP 6.945e-19
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010260 organ senescence BP 2.713e-03
GO:0044282 small molecule catabolic process BP 6.343e-03
GO:0042538 hyperosmotic salinity response BP 7.979e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root - 08% oxygen - 2h		 Log2 signal ratio
cat2-2; harvested 8h continiously maintained in high CO2;
1 250464_at AT5G10040 unknown 0.943 -0.026
2 255807_at AT4G10270 [Wound-responsive family protein] 0.928 -0.391
3 253298_at AT4G33560 [Wound-responsive family protein] 0.846 -0.190
4 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] 0.798 0.002
5 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 0.778 -0.463
6 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] 0.768 -0.152
7 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 0.747 -0.029
8 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.625 -0.070
9 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 0.620 -0.094
10 254200_at AT4G24110 unknown 0.581 -0.123
11 249384_at AT5G39890 unknown 0.573 -0.029
12 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.552 -0.049
13 250152_at AT5G15120 unknown 0.509 -0.054
14 247431_at AT5G62520 SRO5, similar to RCD one 5 0.490 0.017
15 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.475 -0.101
16 245586_at AT4G14980 [Cysteine/Histidine-rich C1 domain family protein] 0.432 -0.013
17 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.426 -0.271
18 261567_at AT1G33055 unknown 0.395 -0.090
19 259879_at AT1G76650 CML38, calmodulin-like 38 0.368 -0.186
20 257922_at AT3G23150 ETR2, ethylene response 2 0.367 -0.048
21 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 0.353 -0.057
22 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.333 -0.140
23 253874_at AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] 0.312 -0.150
24 249015_at AT5G44730 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.289 -0.013
25 260662_at AT1G19540 [NmrA-like negative transcriptional regulator family protein] 0.267 -0.014
26 260668_at AT1G19530 unknown 0.256 -0.337
27 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.255 -0.055
28 245035_at AT2G26400 ARD, ACIREDUCTONE DIOXYGENASE, ARD3, acireductone dioxygenase 3, ATARD3, acireductone dioxygenase 3 0.227 -0.277
29 259616_at AT1G47960 ATC/VIF1, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1, C/VIF1, cell wall / vacuolar inhibitor of fructosidase 1 0.180 -0.038
30 253722_at AT4G29190 AtC3H49, AtOZF2, Arabidopsis thaliana oxidation-related zinc finger 2, AtTZF3, OZF2, oxidation-related zinc finger 2, TZF3, tandem zinc finger 3 0.174 0.032
31 250413_at AT5G11160 APT5, adenine phosphoribosyltransferase 5 0.161 -0.028
32 246200_at AT4G37240 unknown 0.161 0.053
33 248940_at AT5G45400 ATRPA70C, RPA70C 0.160 0.072
34 245410_at AT4G17220 ATMAP70-5, microtubule-associated proteins 70-5, MAP70-5, microtubule-associated proteins 70-5 -0.330 -0.016
35 251887_at AT3G54170 ATFIP37, FKBP12 interacting protein 37, FIP37, FKBP12 interacting protein 37 -0.206 -0.036
36 247733_at AT5G59610 DJC73, DNA J protein C73 -0.168 0.009
37 257891_at AT3G17170 RFC3, REGULATOR OF FATTY-ACID COMPOSITION 3 -0.136 0.025
38 265627_at AT2G27285 [Coiled-coil domain-containing protein 55 (DUF2040)] -0.133 -0.014
39 256676_at AT3G52180 ATPTPKIS1, ATSEX4, DSP4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, SEX4, STARCH-EXCESS 4 -0.124 0.027
40 247222_at AT5G64840 ABCF5, ATP-binding cassette F5, ATGCN5, general control non-repressible 5, GCN5, general control non-repressible 5 -0.123 0.003
41 250550_at AT5G07870 [HXXXD-type acyl-transferase family protein] -0.118 0.019
42 251463_at AT3G59800 unknown -0.117 -0.013
43 266999_at AT2G34450 [HMG-box (high mobility group) DNA-binding family protein] -0.107 -0.066
44 247035_at AT5G67110 ALC, ALCATRAZ -0.105 0.050
45 248337_at AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A -0.104 0.017
46 247114_at AT5G65910 [BSD domain-containing protein] -0.104 -0.030
47 261698_at AT1G32630 unknown -0.099 -0.053
48 264002_at AT2G22360 DJA6, DNA J protein A6 -0.098 0.020
49 248415_at AT5G51620 [Uncharacterised protein family (UPF0172)] -0.098 -0.125
50 261259_at AT1G26660 [Prefoldin chaperone subunit family protein] -0.098 0.038
51 258081_at AT3G26085 [CAAX amino terminal protease family protein] -0.094 0.037
52 253941_at AT4G26980 [RNI-like superfamily protein] -0.094 0.009
53 256121_at AT1G18160 [Protein kinase superfamily protein] -0.093 -0.019
54 247497_at AT5G61770 PPAN, PETER PAN-like protein -0.090 -0.004
55 259896_at AT1G71500 [Rieske (2Fe-2S) domain-containing protein] -0.090 0.011
56 249253_at AT5G42060 [DEK, chromatin associated protein] -0.090 -0.106
57 248777_at AT5G47920 unknown -0.090 0.028
58 251120_at AT3G63490 EMB3126, EMBRYO DEFECTIVE 3126, PRPL1, plastid ribosomal protein L1 -0.088 0.039
59 257571_at AT3G16870 GATA17, GATA transcription factor 17 -0.086 0.029
60 253633_at AT4G30480 AtTPR1, TPR1, tetratricopeptide repeat 1 -0.086 -0.024
61 255434_at AT4G03180 unknown -0.084 -0.077
62 252931_at AT4G38930 [Ubiquitin fusion degradation UFD1 family protein] -0.083 -0.004
63 247885_at AT5G57830 unknown -0.082 -0.010
64 267070_at AT2G41000 [Chaperone DnaJ-domain superfamily protein] -0.081 -0.026
65 251371_at AT3G60360 EDA14, EMBRYO SAC DEVELOPMENT ARREST 14, UTP11, U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11 -0.078 -0.002