4.0:Information of module
root - 04% oxygen - 30min
In comparison with root callus inducing medium 12 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0036293 response to decreased oxygen levels BP 7.226e-15
GO:0070482 response to oxygen levels BP 9.546e-15
GO:0001666 response to hypoxia BP 1.073e-13
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050794 regulation of cellular process BP 1.399e-04
GO:0007165 signal transduction BP 1.968e-04
GO:0044700 single organism signaling BP 3.056e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root - 04% oxygen - 30min		 Log2 signal ratio
root callus inducing medium 12 h
1 255807_at AT4G10270 [Wound-responsive family protein] 1.197 -0.447
2 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] 1.050 -0.597
3 250464_at AT5G10040 unknown 1.002 -0.783
4 253298_at AT4G33560 [Wound-responsive family protein] 0.970 -0.271
5 254200_at AT4G24110 unknown 0.803 -0.420
6 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 0.778 -0.308
7 247431_at AT5G62520 SRO5, similar to RCD one 5 0.719 -0.238
8 249384_at AT5G39890 unknown 0.673 -0.296
9 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] 0.645 -0.500
10 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.632 -0.249
11 259879_at AT1G76650 CML38, calmodulin-like 38 0.594 -0.532
12 250152_at AT5G15120 unknown 0.571 -0.148
13 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.557 -0.692
14 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 0.551 -0.427
15 257925_at AT3G23170 unknown 0.538 -0.584
16 245586_at AT4G14980 [Cysteine/Histidine-rich C1 domain family protein] 0.535 -0.378
17 249015_at AT5G44730 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.465 -0.226
18 261567_at AT1G33055 unknown 0.457 -0.375
19 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.456 -0.221
20 257922_at AT3G23150 ETR2, ethylene response 2 0.435 -0.129
21 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 0.428 -0.364
22 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.425 -0.281
23 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.424 -0.133
24 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.386 -0.210
25 267230_at AT2G44080 ARL, ARGOS-like 0.368 -0.267
26 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.336 -0.539
27 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 0.319 -0.464
28 245401_at AT4G17670 unknown 0.312 -0.336
29 254522_at AT4G19980 unknown 0.288 -0.511
30 247024_at AT5G66985 unknown 0.284 -0.393
31 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 0.242 -0.378
32 261261_at AT1G26730 [EXS (ERD1/XPR1/SYG1) family protein] 0.235 -0.366
33 263850_at AT2G04480 unknown 0.216 -0.256
34 250413_at AT5G11160 APT5, adenine phosphoribosyltransferase 5 0.215 0.108
35 252905_at AT4G39720 [VQ motif-containing protein] 0.210 0.159
36 257467_at AT1G31320 LBD4, LOB domain-containing protein 4 0.208 0.085
37 253874_at AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] 0.202 -0.201
38 248138_at AT5G54960 PDC2, pyruvate decarboxylase-2 0.196 -0.156
39 264939_at AT1G60630 [Leucine-rich repeat protein kinase family protein] 0.189 -0.056
40 245324_at AT4G17260 [Lactate/malate dehydrogenase family protein] 0.178 -0.304
41 253215_at AT4G34950 [Major facilitator superfamily protein] 0.175 -0.255
42 250565_at AT5G08000 E13L3, glucan endo-1,3-beta-glucosidase-like protein 3, PDCB2, PLASMODESMATA CALLOSE-BINDING PROTEIN 2 0.171 -0.118
43 259685_at AT1G63090 AtPP2-A11, phloem protein 2-A11, PP2-A11, phloem protein 2-A11 0.171 -0.238
44 253965_at AT4G26490 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.168 0.154
45 253017_at AT4G37970 ATCAD6, CAD6, cinnamyl alcohol dehydrogenase 6 0.164 -0.151
46 267459_at AT2G33850 unknown 0.145 -0.127
47 261610_at AT1G49560 [Homeodomain-like superfamily protein] 0.144 0.067
48 265247_at AT2G43030 [Ribosomal protein L3 family protein] 0.135 0.051
49 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.133 0.158
50 250223_at AT5G14070 ROXY2 0.128 -0.074
51 259303_at AT3G05130 unknown 0.125 0.229
52 249440_at AT5G40030 [Protein kinase superfamily protein] -0.268 -0.263
53 264405_at AT1G10210 ATMPK1, mitogen-activated protein kinase 1, MPK1, mitogen-activated protein kinase 1 -0.240 -0.315
54 261055_at AT1G01300 [Eukaryotic aspartyl protease family protein] -0.220 0.132
55 245166_at AT2G33170 [Leucine-rich repeat receptor-like protein kinase family protein] -0.217 0.122
56 253406_at AT4G32890 GATA9, GATA transcription factor 9 -0.216 -0.023
57 265840_at AT2G14530 TBL13, TRICHOME BIREFRINGENCE-LIKE 13 -0.212 -0.055
58 252047_at AT3G52490 SMXL3, SMAX1-like 3 -0.204 0.454
59 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.201 0.265
60 250132_at AT5G16560 KAN, KANADI, KAN1, KANADI 1 -0.195 -0.125
61 254966_at AT4G11110 SPA2, SPA1-related 2 -0.193 -0.022
62 260363_at AT1G70550 unknown -0.192 0.300
63 264091_at AT1G79110 BRG2, BOI-related gene 2 -0.187 -0.081
64 257201_at AT3G23740 unknown -0.180 0.082
65 247828_at AT5G58510 unknown -0.180 -0.143
66 262797_at AT1G20840 AtTMT1, TMT1, tonoplast monosaccharide transporter1 -0.180 -0.113
67 246285_at AT4G36980 unknown -0.177 -0.065
68 258206_at AT3G14010 CID4, CTC-interacting domain 4 -0.177 0.075
69 259730_at AT1G77660 [Histone H3 K4-specific methyltransferase SET7/9 family protein] -0.174 0.210
70 247134_at AT5G66230 [Chalcone-flavanone isomerase family protein] -0.171 -0.137
71 262052_at AT1G80020 [hAT-like transposase family (hobo/Ac/Tam3), has a 5.0e-62 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)] -0.171 0.164
72 254206_at AT4G24180 ATTLP1, TLP1, THAUMATIN-LIKE PROTEIN 1 -0.170 -0.016
73 264980_at AT1G27190 [Leucine-rich repeat protein kinase family protein] -0.170 0.162
74 248438_at AT5G51230 AtEMF2, CYR1, EMF2, EMBRYONIC FLOWER 2, VEF2, CYTOKININ RESISTANT 1 -0.168 -0.029
75 246542_at AT5G15020 SNL2, SIN3-like 2 -0.165 -0.024
76 252608_at AT3G45090 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.165 -0.002
77 250571_at AT5G08200 [peptidoglycan-binding LysM domain-containing protein] -0.165 0.007
78 267592_at AT2G39710 [Eukaryotic aspartyl protease family protein] -0.163 0.676
79 248912_at AT5G45670 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.162 -0.128
80 251688_at AT3G56480 [myosin heavy chain-related] -0.159 -0.213
81 249146_at AT5G43310 [COP1-interacting protein-related] -0.158 -0.009
82 266920_at AT2G45750 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.158 0.032
83 259694_at AT1G63180 UGE3, UDP-D-glucose/UDP-D-galactose 4-epimerase 3 -0.157 0.296
84 249705_at AT5G35580 [Protein kinase superfamily protein] -0.153 -0.396
85 245479_at AT4G16140 [proline-rich family protein] -0.150 -0.108
86 254926_at AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 -0.148 -0.150
87 263194_at AT1G36060 [Integrase-type DNA-binding superfamily protein] -0.147 -0.062
88 263470_at AT2G31900 ATMYO5, MYOSIN 5, ATXIF, MYOSIN XI F, XIF, myosin-like protein XIF -0.146 0.118
89 250774_at AT5G05450 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.145 0.093
90 255828_at AT2G40630 [Uncharacterised conserved protein (UCP030365)] -0.145 0.157
91 255547_at AT4G01920 [Cysteine/Histidine-rich C1 domain family protein] -0.145 0.200
92 266444_at AT2G43150 [Proline-rich extensin-like family protein] -0.144 -0.113
93 249235_at AT5G42100 ATBG_PPAP, ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, BG_PPAP, beta-1,3-glucanase_putative -0.142 -0.048
94 253300_at AT4G33580 ATBCA5, A. THALIANA BETA CARBONIC ANHYDRASE 5, BCA5, beta carbonic anhydrase 5 -0.142 0.066
95 255788_at AT2G33310 IAA13, auxin-induced protein 13 -0.140 0.299
96 246801_at AT5G26830 [Threonyl-tRNA synthetase] -0.140 0.078
97 247955_at AT5G56950 NAP1;3, nucleosome assembly protein 1;3, NFA03, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, NFA3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3 -0.139 0.039
98 247845_at AT5G58090 [O-Glycosyl hydrolases family 17 protein] -0.137 0.007
99 265827_at AT2G42400 ATVOZ2, VASCULAR PLANT ONE ZINC FINGER PROTEIN 2, VOZ2, vascular plant one zinc finger protein 2 -0.137 0.030
100 261934_at AT1G22400 ATUGT85A1, ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UGT85A1 -0.137 0.079
101 246935_at AT5G25350 EBF2, EIN3-binding F box protein 2 -0.137 0.158