4.0:Information of module
root - 01% oxygen - 48h
In comparison with root cells endodermis 140mM NaCl 32 hours help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001666 response to hypoxia BP 1.013e-04
GO:0010310 regulation of hydrogen peroxide metaboli... BP 1.044e-04
GO:0036293 response to decreased oxygen levels BP 1.208e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009698 phenylpropanoid metabolic process BP 5.086e-04
GO:0019748 secondary metabolic process BP 1.109e-03
GO:0006914 autophagy BP 2.990e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root - 01% oxygen - 48h		 Log2 signal ratio
root cells endodermis 140mM NaCl 32 hours
1 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 1.290 0.058
2 245226_at AT3G29970 [B12D protein] 1.276 0.056
3 255807_at AT4G10270 [Wound-responsive family protein] 1.132 0.586
4 253298_at AT4G33560 [Wound-responsive family protein] 1.005 0.371
5 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 0.990 -0.286
6 257947_at AT3G21720 ICL, isocitrate lyase 0.878 0.188
7 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.699 0.232
8 254200_at AT4G24110 unknown 0.678 0.331
9 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.667 0.126
10 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.626 0.264
11 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.619 0.359
12 250152_at AT5G15120 unknown 0.536 0.436
13 247431_at AT5G62520 SRO5, similar to RCD one 5 0.534 -0.103
14 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.458 0.178
15 262679_at AT1G75830 LCR67, low-molecular-weight cysteine-rich 67, PDF1.1, PLANT DEFENSIN 1.1 0.454 0.057
16 245951_at AT5G19550 AAT2, ASPARTATE AMINOTRANSFERASE 2, ASP2, aspartate aminotransferase 2 0.412 0.043
17 263515_at AT2G21640 unknown 0.358 -0.085
18 256114_at AT1G16850 unknown 0.318 0.034
19 254839_at AT4G12400 Hop3, Hop3 0.302 0.087
20 247228_at AT5G65140 TPPJ, trehalose-6-phosphate phosphatase J 0.298 0.221
21 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 0.288 0.266
22 266458_at AT2G47710 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.282 -0.052
23 264176_at AT1G02110 unknown 0.262 0.188
24 253874_at AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] 0.262 0.282
25 256299_at AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 0.259 0.159
26 246071_at AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 0.244 -0.049
27 251005_at AT5G02590 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.240 0.206
28 252281_at AT3G49320 [Metal-dependent protein hydrolase] 0.239 0.076
29 258270_at AT3G15650 [alpha/beta-Hydrolases superfamily protein] 0.238 -0.377
30 247293_at AT5G64510 TIN1, tunicamycin induced 1 0.228 -0.212
31 258920_at AT3G10520 AHB2, haemoglobin 2, ARATH GLB2, ATGLB2, ARABIDOPSIS HEMOGLOBIN 2, GLB2, HEMOGLOBIN 2, HB2, haemoglobin 2, NSHB2, NON-SYMBIOTIC HAEMOGLOBIN 2 0.227 0.115
32 256578_at AT3G28200 [Peroxidase superfamily protein] 0.222 -0.066
33 251958_at AT3G53560 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.216 -0.044
34 257021_at AT3G19710 BCAT4, branched-chain aminotransferase4 0.211 -0.075
35 260795_at AT1G06225 CLE3, CLAVATA3/ESR-RELATED 3 0.205 -0.019
36 247247_at AT5G64650 [Ribosomal protein L17 family protein] 0.200 0.110
37 261826_at AT1G11580 ATPMEPCRA, PMEPCRA, methylesterase PCR A 0.191 0.134
38 257487_at AT1G71850 [Ubiquitin carboxyl-terminal hydrolase family protein] 0.189 0.311
39 266510_at AT2G47990 EDA13, EMBRYO SAC DEVELOPMENT ARREST 13, EDA19, EMBRYO SAC DEVELOPMENT ARREST 19, SWA1, SLOW WALKER1 0.186 0.305
40 263402_at AT2G04050 [MATE efflux family protein] 0.185 -0.013
41 251585_at AT3G58630 [sequence-specific DNA binding transcription factors] 0.185 -0.105
42 254553_at AT4G19530 [disease resistance protein (TIR-NBS-LRR class) family] 0.181 -0.136
43 258987_at AT3G08950 HCC1, homologue of the copper chaperone SCO1 0.181 0.019
44 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.179 0.052
45 246250_at AT4G36880 CP1, cysteine proteinase1, RDL1, RD21A-LIKE PROTEASE1 0.175 -0.157
46 264357_at AT1G03360 ATRRP4, ribosomal RNA processing 4, RRP4, ribosomal RNA processing 4 0.173 0.592
47 266234_at AT2G02350 AtPP2-B9, Phloem protein 2-B9, SKIP3, SKP1 interacting partner 3 0.172 0.054
48 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.612 -0.594
49 258983_at AT3G08860 PYD4, PYRIMIDINE 4 -0.521 -0.049
50 261574_at AT1G01190 CYP78A8, cytochrome P450, family 78, subfamily A, polypeptide 8 -0.490 -0.112
51 261395_at AT1G79700 WRI4, WRINKLED 4 -0.422 -0.056
52 266191_at AT2G39040 [Peroxidase superfamily protein] -0.363 -0.344
53 255814_at AT1G19900 [glyoxal oxidase-related protein] -0.353 -0.753
54 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 -0.347 -0.527
55 255645_at AT4G00880 SAUR31, SMALL AUXIN UPREGULATED RNA 31 -0.303 -0.128
56 262705_at AT1G16260 [Wall-associated kinase family protein] -0.301 -0.056
57 249765_at AT5G24030 SLAH3, SLAC1 homologue 3 -0.298 -0.199
58 260560_at AT2G43590 [Chitinase family protein] -0.296 -0.069
59 262301_at AT1G70880 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.288 -0.098
60 247425_at AT5G62550 unknown -0.288 0.262
61 246978_at AT5G24910 CYP714A1, cytochrome P450, family 714, subfamily A, polypeptide 1, ELA1, EUI-like p450 A1 -0.267 -0.573
62 255438_at AT4G03070 AOP, AOP1, AOP1.1 -0.262 -0.708
63 245947_at AT5G19530 ACL5, ACAULIS 5 -0.259 -0.366
64 265096_at AT1G04030 unknown -0.257 -0.091
65 255265_at AT4G05190 ATK5, kinesin 5 -0.243 0.167
66 259618_at AT1G48000 AtMYB112, myb domain protein 112, MYB112, myb domain protein 112 -0.242 0.182
67 263282_at AT2G14095 unknown -0.236 -0.420
68 253483_at AT4G31910 BAT1, BR-related AcylTransferase1, PIZ, PIZZA -0.231 -0.519
69 258718_at AT3G09760 [RING/U-box superfamily protein] -0.228 -0.046
70 263106_at AT2G05160 [CCCH-type zinc fingerfamily protein with RNA-binding domain] -0.224 -0.801
71 264184_at AT1G54790 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.216 -0.181
72 256137_at AT1G48690 [Auxin-responsive GH3 family protein] -0.214 -0.216
73 267481_at AT2G02780 Leucine-rich repeat protein kinase family protein -0.208 0.059
74 252089_at AT3G52110 unknown -0.205 0.037
75 249060_at AT5G44560 VPS2.2 -0.204 0.482
76 263441_at AT2G28620 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.197 0.004
77 245186_at AT1G67710 ARR11, response regulator 11 -0.197 -0.261
78 249800_at AT5G23660 AtSWEET12, MTN3, homolog of Medicago truncatula MTN3, SWEET12 -0.197 -0.273
79 254670_at AT4G18390 TCP2, TCP2, TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 -0.191 0.034
80 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 -0.191 -0.215
81 248343_at AT5G52260 AtMYB19, myb domain protein 19, MYB19, myb domain protein 19 -0.186 -0.313
82 253618_at AT4G30420 UMAMIT34, Usually multiple acids move in and out Transporters 34 -0.184 -0.143
83 250369_at AT5G11300 CYC2BAT, CYC3B, mitotic-like cyclin 3B from Arabidopsis, CYCA2;2, CYCLIN A2;2 -0.180 0.012
84 255338_at AT4G04470 PMP22 -0.177 -0.005
85 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 -0.175 -0.203
86 260806_at AT1G78260 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.174 -0.432
87 260776_at AT1G14580 [C2H2-like zinc finger protein] -0.172 0.027
88 254726_at AT4G13660 ATPRR2, PRR2, pinoresinol reductase 2 -0.171 -0.078
89 249109_at AT5G43700 ATAUX2-11, AUXIN INDUCIBLE 2-11, IAA4, indole-3-acetic acid inducible 4 -0.171 -0.062
90 245309_at AT4G15140 unknown -0.167 -0.093
91 265913_at AT2G25625 unknown -0.164 0.101
92 261491_at AT1G14350 AtMYB124, myb domain protein 124, FLP, FOUR LIPS, MYB124 -0.164 -0.012
93 261255_at AT1G05900 ATNTH2, NTH2, endonuclease III 2 -0.161 -0.012