4.0:Information of module
root - 01% oxygen - 2h
In comparison with root cells cortex 140mM NaCl 32 hours help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0036293 response to decreased oxygen levels BP 4.010e-17
GO:0070482 response to oxygen levels BP 6.216e-17
GO:0001666 response to hypoxia BP 1.532e-16
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009698 phenylpropanoid metabolic process BP 6.813e-08
GO:0009699 phenylpropanoid biosynthetic process BP 4.130e-07
GO:0019748 secondary metabolic process BP 6.752e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root - 01% oxygen - 2h		 Log2 signal ratio
root cells cortex 140mM NaCl 32 hours
1 250464_at AT5G10040 unknown 1.661 0.554
2 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] 1.467 0.812
3 253298_at AT4G33560 [Wound-responsive family protein] 1.270 0.228
4 255807_at AT4G10270 [Wound-responsive family protein] 1.201 0.639
5 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] 1.176 0.276
6 254200_at AT4G24110 unknown 1.113 0.122
7 259879_at AT1G76650 CML38, calmodulin-like 38 1.100 0.085
8 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 1.058 -0.278
9 247431_at AT5G62520 SRO5, similar to RCD one 5 1.056 -0.127
10 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 1.055 0.423
11 249384_at AT5G39890 unknown 0.969 0.181
12 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.965 0.066
13 257925_at AT3G23170 unknown 0.956 0.180
14 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.922 0.077
15 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.886 0.269
16 253060_at AT4G37710 [VQ motif-containing protein] 0.873 0.183
17 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.790 0.585
18 250152_at AT5G15120 unknown 0.784 0.413
19 254300_at AT4G22780 ACR7, ACT domain repeat 7 0.776 0.113
20 257922_at AT3G23150 ETR2, ethylene response 2 0.754 -0.164
21 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.717 0.255
22 245226_at AT3G29970 [B12D protein] 0.713 -0.020
23 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.702 0.135
24 253616_at AT4G30380 [Barwin-related endoglucanase] 0.700 0.009
25 253573_at AT4G31020 [alpha/beta-Hydrolases superfamily protein] 0.672 -0.164
26 263295_at AT2G14210 AGL44, AGAMOUS-like 44, ANR1, ARABIDOPSIS NITRATE REGULATED 1 0.667 0.244
27 245586_at AT4G14980 [Cysteine/Histidine-rich C1 domain family protein] 0.649 -0.109
28 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.638 0.181
29 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.638 0.171
30 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 0.633 0.031
31 249015_at AT5G44730 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.619 0.334
32 267230_at AT2G44080 ARL, ARGOS-like 0.616 0.146
33 249234_at AT5G42200 [RING/U-box superfamily protein] 0.601 -0.129
34 253264_at AT4G33950 ATOST1, OPEN STOMATA 1, OST1, OPEN STOMATA 1, P44, SNRK2-6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, SNRK2.6, SNF1-RELATED PROTEIN KINASE 2.6, SRK2E 0.588 -0.034
35 261567_at AT1G33055 unknown 0.577 0.511
36 245035_at AT2G26400 ARD, ACIREDUCTONE DIOXYGENASE, ARD3, acireductone dioxygenase 3, ATARD3, acireductone dioxygenase 3 0.566 0.007
37 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 0.543 0.266
38 266486_at AT2G47950 unknown 0.541 -0.026
39 263850_at AT2G04480 unknown 0.527 0.008
40 253722_at AT4G29190 AtC3H49, AtOZF2, Arabidopsis thaliana oxidation-related zinc finger 2, AtTZF3, OZF2, oxidation-related zinc finger 2, TZF3, tandem zinc finger 3 0.522 0.103
41 254632_at AT4G18630 unknown -0.434 -0.415
42 260883_at AT1G29270 unknown -0.383 0.188
43 252232_at AT3G49760 AtbZIP5, basic leucine-zipper 5, bZIP5, basic leucine-zipper 5 -0.377 -0.237
44 252594_at AT3G45680 [Major facilitator superfamily protein] -0.367 0.145
45 259832_at AT1G69580 [Homeodomain-like superfamily protein] -0.343 -0.510
46 247600_at AT5G60890 ATMYB34, ATR1, ALTERED TRYPTOPHAN REGULATION 1, MYB34, myb domain protein 34 -0.333 0.063
47 257056_at AT3G15350 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.325 -0.017
48 264902_at AT1G23060 MDP40, MICROTUBULE DESTABILIZING PROTEIN 40 -0.325 -0.015
49 255645_at AT4G00880 SAUR31, SMALL AUXIN UPREGULATED RNA 31 -0.320 0.124
50 247768_at AT5G58900 [Homeodomain-like transcriptional regulator] -0.315 -0.230
51 266828_at AT2G22930 [UDP-Glycosyltransferase superfamily protein] -0.289 -0.129
52 260067_at AT1G73780 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.268 0.063
53 266327_at AT2G46680 ATHB-7, homeobox 7, ATHB7, ARABIDOPSIS THALIANA HOMEOBOX 7, HB-7, homeobox 7 -0.265 -0.014
54 262396_at AT1G49470 unknown -0.256 -0.230
55 266271_at AT2G29440 ATGSTU6, glutathione S-transferase tau 6, GST24, GLUTATHIONE S-TRANSFERASE 24, GSTU6, glutathione S-transferase tau 6 -0.252 -0.056
56 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 -0.252 0.049
57 249765_at AT5G24030 SLAH3, SLAC1 homologue 3 -0.246 -0.156
58 264775_at AT1G22880 ATCEL5, ARABIDOPSIS THALIANA CELLULASE 5, ATGH9B4, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, CEL5, cellulase 5 -0.230 0.197
59 246534_at AT5G15890 TBL21, TRICHOME BIREFRINGENCE-LIKE 21 -0.229 -0.459
60 262780_at AT1G13090 CYP71B28, cytochrome P450, family 71, subfamily B, polypeptide 28 -0.228 -0.049
61 259220_at AT3G03550 [RING/U-box superfamily protein] -0.227 -0.110
62 254343_at AT4G21990 APR3, APS reductase 3, ATAPR3, PRH-26, PRH26, PAPS REDUCTASE HOMOLOG 26 -0.225 -0.083
63 245677_at AT1G56660 unknown -0.223 -0.092
64 260024_at AT1G30080 [Glycosyl hydrolase superfamily protein] -0.218 -0.458
65 247707_at AT5G59450 [GRAS family transcription factor] -0.218 -0.385
66 246097_at AT5G20270 HHP1, heptahelical transmembrane protein1 -0.215 0.065
67 253195_at AT4G35420 DRL1, dihydroflavonol 4-reductase-like1, TKPR1, tetraketide alpha-pyrone reductase 1 -0.213 -0.267
68 257670_at AT3G20340 unknown -0.212 -0.048
69 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.210 -0.210
70 252202_at AT3G50300 [HXXXD-type acyl-transferase family protein] -0.208 -0.094
71 253483_at AT4G31910 BAT1, BR-related AcylTransferase1, PIZ, PIZZA -0.205 -0.305
72 253500_at AT4G31920 ARR10, response regulator 10, RR10, response regulator 10 -0.200 -0.174
73 259736_at AT1G64390 AtGH9C2, glycosyl hydrolase 9C2, GH9C2, glycosyl hydrolase 9C2 -0.200 -0.039
74 259520_at AT1G12320 unknown -0.198 -0.030
75 251191_at AT3G62590 [alpha/beta-Hydrolases superfamily protein] -0.188 0.033
76 260608_at AT2G43870 [Pectin lyase-like superfamily protein] -0.182 -0.176
77 249289_at AT5G41040 ASFT, aliphatic suberin feruloyl-transferase, HHT, hydroxycinnamoyl- CoA:ω-hydroxyacid O-hydroxycinnamoyltransferase, RWP1, REDUCED LEVELS OF WALL-BOUND PHENOLICS 1 -0.182 -0.339
78 257311_at AT3G26570 ORF02, PHT2;1, phosphate transporter 2;1 -0.177 -0.139
79 247957_at AT5G57050 ABI2, ABA INSENSITIVE 2, AtABI2 -0.176 -0.103