4.0:Information of module
root - 01% oxygen - 2h
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0036293 response to decreased oxygen levels BP 4.010e-17
GO:0070482 response to oxygen levels BP 6.216e-17
GO:0001666 response to hypoxia BP 1.532e-16
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009698 phenylpropanoid metabolic process BP 6.813e-08
GO:0009699 phenylpropanoid biosynthetic process BP 4.130e-07
GO:0019748 secondary metabolic process BP 6.752e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root - 01% oxygen - 2h		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 250464_at AT5G10040 unknown 1.661 0.145
2 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] 1.467 0.254
3 253298_at AT4G33560 [Wound-responsive family protein] 1.270 0.133
4 255807_at AT4G10270 [Wound-responsive family protein] 1.201 -0.027
5 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] 1.176 -0.075
6 254200_at AT4G24110 unknown 1.113 -0.113
7 259879_at AT1G76650 CML38, calmodulin-like 38 1.100 0.001
8 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 1.058 0.109
9 247431_at AT5G62520 SRO5, similar to RCD one 5 1.056 -0.036
10 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 1.055 0.066
11 249384_at AT5G39890 unknown 0.969 -0.007
12 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.965 -0.030
13 257925_at AT3G23170 unknown 0.956 -0.058
14 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.922 0.006
15 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.886 -0.046
16 253060_at AT4G37710 [VQ motif-containing protein] 0.873 -0.025
17 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.790 -0.112
18 250152_at AT5G15120 unknown 0.784 -0.022
19 254300_at AT4G22780 ACR7, ACT domain repeat 7 0.776 -0.094
20 257922_at AT3G23150 ETR2, ethylene response 2 0.754 0.124
21 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.717 -0.082
22 245226_at AT3G29970 [B12D protein] 0.713 -0.149
23 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.702 0.028
24 253616_at AT4G30380 [Barwin-related endoglucanase] 0.700 -0.026
25 253573_at AT4G31020 [alpha/beta-Hydrolases superfamily protein] 0.672 0.096
26 263295_at AT2G14210 AGL44, AGAMOUS-like 44, ANR1, ARABIDOPSIS NITRATE REGULATED 1 0.667 -0.134
27 245586_at AT4G14980 [Cysteine/Histidine-rich C1 domain family protein] 0.649 -0.134
28 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.638 0.283
29 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.638 -0.189
30 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 0.633 -0.024
31 249015_at AT5G44730 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.619 0.022
32 267230_at AT2G44080 ARL, ARGOS-like 0.616 0.020
33 249234_at AT5G42200 [RING/U-box superfamily protein] 0.601 -0.270
34 253264_at AT4G33950 ATOST1, OPEN STOMATA 1, OST1, OPEN STOMATA 1, P44, SNRK2-6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, SNRK2.6, SNF1-RELATED PROTEIN KINASE 2.6, SRK2E 0.588 0.015
35 261567_at AT1G33055 unknown 0.577 -0.054
36 245035_at AT2G26400 ARD, ACIREDUCTONE DIOXYGENASE, ARD3, acireductone dioxygenase 3, ATARD3, acireductone dioxygenase 3 0.566 0.024
37 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 0.543 0.046
38 266486_at AT2G47950 unknown 0.541 0.116
39 263850_at AT2G04480 unknown 0.527 0.015
40 253722_at AT4G29190 AtC3H49, AtOZF2, Arabidopsis thaliana oxidation-related zinc finger 2, AtTZF3, OZF2, oxidation-related zinc finger 2, TZF3, tandem zinc finger 3 0.522 -0.128
41 254632_at AT4G18630 unknown -0.434 -0.027
42 260883_at AT1G29270 unknown -0.383 0.046
43 252232_at AT3G49760 AtbZIP5, basic leucine-zipper 5, bZIP5, basic leucine-zipper 5 -0.377 0.068
44 252594_at AT3G45680 [Major facilitator superfamily protein] -0.367 -0.031
45 259832_at AT1G69580 [Homeodomain-like superfamily protein] -0.343 -0.100
46 247600_at AT5G60890 ATMYB34, ATR1, ALTERED TRYPTOPHAN REGULATION 1, MYB34, myb domain protein 34 -0.333 -0.047
47 257056_at AT3G15350 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.325 -0.240
48 264902_at AT1G23060 MDP40, MICROTUBULE DESTABILIZING PROTEIN 40 -0.325 -0.092
49 255645_at AT4G00880 SAUR31, SMALL AUXIN UPREGULATED RNA 31 -0.320 -0.116
50 247768_at AT5G58900 [Homeodomain-like transcriptional regulator] -0.315 0.007
51 266828_at AT2G22930 [UDP-Glycosyltransferase superfamily protein] -0.289 0.032
52 260067_at AT1G73780 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.268 0.215
53 266327_at AT2G46680 ATHB-7, homeobox 7, ATHB7, ARABIDOPSIS THALIANA HOMEOBOX 7, HB-7, homeobox 7 -0.265 -0.060
54 262396_at AT1G49470 unknown -0.256 0.006
55 266271_at AT2G29440 ATGSTU6, glutathione S-transferase tau 6, GST24, GLUTATHIONE S-TRANSFERASE 24, GSTU6, glutathione S-transferase tau 6 -0.252 0.002
56 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 -0.252 0.293
57 249765_at AT5G24030 SLAH3, SLAC1 homologue 3 -0.246 0.012
58 264775_at AT1G22880 ATCEL5, ARABIDOPSIS THALIANA CELLULASE 5, ATGH9B4, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, CEL5, cellulase 5 -0.230 0.078
59 246534_at AT5G15890 TBL21, TRICHOME BIREFRINGENCE-LIKE 21 -0.229 -0.247
60 262780_at AT1G13090 CYP71B28, cytochrome P450, family 71, subfamily B, polypeptide 28 -0.228 0.056
61 259220_at AT3G03550 [RING/U-box superfamily protein] -0.227 -0.044
62 254343_at AT4G21990 APR3, APS reductase 3, ATAPR3, PRH-26, PRH26, PAPS REDUCTASE HOMOLOG 26 -0.225 -0.078
63 245677_at AT1G56660 unknown -0.223 -0.147
64 260024_at AT1G30080 [Glycosyl hydrolase superfamily protein] -0.218 0.142
65 247707_at AT5G59450 [GRAS family transcription factor] -0.218 0.021
66 246097_at AT5G20270 HHP1, heptahelical transmembrane protein1 -0.215 -0.078
67 253195_at AT4G35420 DRL1, dihydroflavonol 4-reductase-like1, TKPR1, tetraketide alpha-pyrone reductase 1 -0.213 -0.036
68 257670_at AT3G20340 unknown -0.212 -0.153
69 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.210 -0.074
70 252202_at AT3G50300 [HXXXD-type acyl-transferase family protein] -0.208 0.016
71 253483_at AT4G31910 BAT1, BR-related AcylTransferase1, PIZ, PIZZA -0.205 -0.112
72 253500_at AT4G31920 ARR10, response regulator 10, RR10, response regulator 10 -0.200 -0.004
73 259736_at AT1G64390 AtGH9C2, glycosyl hydrolase 9C2, GH9C2, glycosyl hydrolase 9C2 -0.200 0.095
74 259520_at AT1G12320 unknown -0.198 -0.140
75 251191_at AT3G62590 [alpha/beta-Hydrolases superfamily protein] -0.188 0.007
76 260608_at AT2G43870 [Pectin lyase-like superfamily protein] -0.182 0.159
77 249289_at AT5G41040 ASFT, aliphatic suberin feruloyl-transferase, HHT, hydroxycinnamoyl- CoA:ω-hydroxyacid O-hydroxycinnamoyltransferase, RWP1, REDUCED LEVELS OF WALL-BOUND PHENOLICS 1 -0.182 0.273
78 257311_at AT3G26570 ORF02, PHT2;1, phosphate transporter 2;1 -0.177 -0.130
79 247957_at AT5G57050 ABI2, ABA INSENSITIVE 2, AtABI2 -0.176 0.200