4.0:Information of module
mpk6-ko H2O 4h
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 22 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006139 nucleobase-containing compound metabolic... BP 5.556e-03
GO:1901360 organic cyclic compound metabolic proces... BP 5.863e-03
GO:0006725 cellular aromatic compound metabolic pro... BP 8.606e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009556 microsporogenesis BP 4.495e-04
GO:0048236 plant-type spore development BP 5.957e-04
GO:0071554 cell wall organization or biogenesis BP 9.046e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
mpk6-ko H2O 4h		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 22 hrs Taking 70 mm of Stump (4dpg)
1 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.408 -0.463
2 245504_at AT4G15660 [Thioredoxin superfamily protein] 0.407 -0.329
3 250006_at AT5G18660 PCB2, PALE-GREEN AND CHLOROPHYLL B REDUCED 2 0.393 -0.661
4 256383_at AT1G66820 [glycine-rich protein] 0.390 1.229
5 247345_at AT5G63760 ARI15, ARIADNE 15, ATARI15, ARABIDOPSIS ARIADNE 15 0.382 -0.386
6 257999_at AT3G27540 [beta-1,4-N-acetylglucosaminyltransferase family protein] 0.377 0.544
7 259444_at AT1G02370 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.359 -0.116
8 267299_at AT2G30150 [UDP-Glycosyltransferase superfamily protein] 0.356 -0.241
9 249047_at AT5G44410 [FAD-binding Berberine family protein] 0.351 -0.129
10 259661_at AT1G55265 unknown 0.348 -1.028
11 262876_at AT1G64750 ATDSS1(I), deletion of SUV3 suppressor 1(I), DSS1(I), deletion of SUV3 suppressor 1(I) 0.346 0.971
12 251507_at AT3G59080 [Eukaryotic aspartyl protease family protein] 0.345 -0.311
13 266510_at AT2G47990 EDA13, EMBRYO SAC DEVELOPMENT ARREST 13, EDA19, EMBRYO SAC DEVELOPMENT ARREST 19, SWA1, SLOW WALKER1 0.331 1.371
14 256890_at AT3G23830 AtGRP4, GR-RBP4, GRP4, glycine-rich RNA-binding protein 4 0.330 0.500
15 253482_at AT4G31985 [Ribosomal protein L39 family protein] 0.330 0.696
16 253538_at AT4G31460 [Ribosomal L28 family] 0.327 -0.059
17 258063_at AT3G14620 CYP72A8, cytochrome P450, family 72, subfamily A, polypeptide 8 0.327 -0.024
18 256042_at AT1G07220 unknown 0.323 0.931
19 264806_at AT1G08610 [Pentatricopeptide repeat (PPR) superfamily protein] 0.323 -0.900
20 264731_at AT1G62150 [Mitochondrial transcription termination factor family protein] 0.323 -0.010
21 254431_at AT4G20840 [FAD-binding Berberine family protein] 0.316 -0.861
22 258437_at AT3G16560 [Protein phosphatase 2C family protein] 0.315 0.163
23 249330_at AT5G40970 unknown 0.315 -0.628
24 250459_at AT5G09860 AtHPR1, AtTHO1, HPR1, THO1 0.312 -0.140
25 264625_at AT1G09020 ATSNF4, SNF4, homolog of yeast sucrose nonfermenting 4 0.311 -0.876
26 248853_at AT5G46570 BSK2, brassinosteroid-signaling kinase 2 0.306 0.545
27 263579_at AT2G17030 unknown 0.304 0.320
28 264920_at AT1G60550 DHNS, ECHID, enoyl-CoA hydratase/isomerase D 0.303 0.137
29 257310_at AT3G26560 [ATP-dependent RNA helicase, putative] 0.303 0.822
30 259899_at AT1G71210 [Pentatricopeptide repeat (PPR) superfamily protein] 0.303 -1.301
31 255039_at AT4G09570 ATCPK4, CPK4, calcium-dependent protein kinase 4 0.298 0.737
32 251621_at AT3G57700 [Protein kinase superfamily protein] 0.296 -0.369
33 261112_at AT1G75420 [UDP-Glycosyltransferase superfamily protein] 0.295 0.556
34 252482_at AT3G46670 UGT76E11, UDP-glucosyl transferase 76E11 0.292 -0.811
35 266567_at AT2G24050 eIFiso4G2, eukaryotic translation Initiation Factor isoform 4G2 0.291 0.623
36 254652_at AT4G18170 ATWRKY28, WRKY28, WRKY DNA-binding protein 28 0.291 -0.274
37 261255_at AT1G05900 ATNTH2, NTH2, endonuclease III 2 0.289 0.154
38 264540_at AT1G55630 [Pentatricopeptide repeat (PPR) superfamily protein] 0.287 0.221
39 254320_at AT4G22580 [Exostosin family protein] 0.286 -0.386
40 248961_at AT5G45650 [subtilase family protein] 0.285 0.295
41 248533_at AT5G50020 [DHHC-type zinc finger family protein] 0.285 -0.507
42 246516_at AT5G15740 [O-fucosyltransferase family protein] 0.283 0.610
43 266946_at AT2G18890 [Protein kinase superfamily protein] 0.282 0.431
44 259677_at AT1G77740 PIP5K2, phosphatidylinositol-4-phosphate 5-kinase 2 0.279 -0.309
45 256916_at AT3G24050 GATA1, GATA transcription factor 1 0.273 0.848
46 251028_at AT5G02230 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.270 0.470
47 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] 0.270 -0.929
48 263632_at AT2G04795 unknown 0.268 0.186
49 261055_at AT1G01300 [Eukaryotic aspartyl protease family protein] 0.268 0.437
50 247098_at AT5G66470 [RNA binding] 0.264 0.372
51 259763_at AT1G77630 LYM3, lysin-motif (LysM) domain protein 3, LYP3, LysM-containing receptor protein 3 0.260 -0.642
52 266705_at AT2G19750 [Ribosomal protein S30 family protein] 0.259 0.484
53 266903_at AT2G34570 MEE21, maternal effect embryo arrest 21 0.259 0.434
54 260722_at AT1G48040 [Protein phosphatase 2C family protein] 0.258 -0.555
55 254508_at AT4G20170 GALS3, galactan synthase 3 0.256 -0.167
56 262590_at AT1G15100 RHA2A, RING-H2 finger A2A 0.256 -0.080
57 253574_at AT4G31030 [Putative membrane lipoprotein] 0.254 0.055
58 253233_at AT4G34290 [SWIB/MDM2 domain superfamily protein] 0.253 0.301
59 264441_at AT1G27435 unknown 0.253 0.647
60 266882_at AT2G44670 unknown 0.252 0.008
61 246021_at AT5G21100 [Plant L-ascorbate oxidase] 0.251 -0.537
62 248328_at AT5G52660 [Homeodomain-like superfamily protein] 0.250 -0.146
63 252453_at AT3G47120 [RNA recognition motif (RRM)-containing protein] 0.247 -0.104
64 266889_at AT2G44640 unknown 0.244 0.055
65 252875_at AT4G39990 ATGB3, GTP-BINDING PROTEIN 3, ATRAB11G, ATRABA4B, ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, RABA4B, RAB GTPase homolog A4B 0.243 1.315
66 262821_at AT1G11800 [endonuclease/exonuclease/phosphatase family protein] 0.239 0.235
67 250146_at AT5G14660 ATDEF2, DEF2, PDF1B, peptide deformylase 1B 0.239 -0.079
68 257314_at AT3G26590 [MATE efflux family protein] 0.239 0.169
69 255334_at AT4G04420 [copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] -0.621 -0.985
70 249634_at AT5G36840 unknown -0.597 -0.390
71 259702_at AT1G77780 [Glycosyl hydrolase superfamily protein] -0.565 0.055
72 260344_at AT1G69240 ATMES15, ARABIDOPSIS THALIANA METHYL ESTERASE 15, MES15, methyl esterase 15, RHS9, ROOT HAIR SPECIFIC 9 -0.554 0.543
73 263069_at AT2G17590 [Cysteine/Histidine-rich C1 domain family protein] -0.531 -0.264
74 246425_at AT5G17420 ATCESA7, CESA7, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, IRX3, IRREGULAR XYLEM 3, MUR10, MURUS 10 -0.506 0.629
75 259796_at AT1G64270 [Mutator-like transposase family, has a 1.0e-06 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -0.493 -0.022
76 261929_at AT1G22460 [O-fucosyltransferase family protein] -0.471 -0.541
77 251608_at AT3G57860 GIG1, GIGAS CELL 1, OSD1, OMISSION OF SECOND DIVISION, UVI4-LIKE, UV-B-insensitive 4-like -0.463 0.622
78 260796_at AT1G78360 ATGSTU21, glutathione S-transferase TAU 21, GSTU21, glutathione S-transferase TAU 21 -0.462 -0.541
79 265114_at AT1G62440 LRX2, leucine-rich repeat/extensin 2 -0.453 -0.609
80 263979_at AT2G42840 PDF1, protodermal factor 1 -0.446 0.170
81 266139_at AT2G28085 SAUR42, SMALL AUXIN UPREGULATED RNA 42 -0.438 0.359
82 265536_at AT2G15880 [Leucine-rich repeat (LRR) family protein] -0.434 0.266
83 257915_at AT3G23130 FLO10, FLORAL DEFECTIVE 10, FON1, FLORAL ORGAN NUMBER 1, SUP, SUPERMAN -0.423 0.118
84 263566_at AT2G15340 [glycine-rich protein] -0.423 -0.226
85 265482_at AT2G15780 [Cupredoxin superfamily protein] -0.417 -0.466
86 262764_at AT1G13140 CYP86C3, cytochrome P450, family 86, subfamily C, polypeptide 3 -0.415 0.314
87 267585_s_at AT2G42090 ACT9, actin 9 -0.410 -0.730
88 247170_at AT5G65530 [Protein kinase superfamily protein] -0.395 0.656
89 258083_at AT3G25855 [Copper transport protein family] -0.394 -0.961
90 258675_at AT3G08770 LTP6, lipid transfer protein 6 -0.383 0.447
91 247097_at AT5G66460 AtMAN7, MAN7, endo-beta-mannase 7 -0.381 0.287
92 256147_at AT1G55080 MED9 -0.380 1.055
93 249946_at AT5G19170 unknown -0.379 -0.744
94 246693_at AT5G29070 unknown -0.377 -0.653
95 245143_at AT2G45450 ZPR1, LITTLE ZIPPER 1 -0.375 -0.302
96 259167_at AT3G01570 [Oleosin family protein] -0.373 -0.719
97 263769_at AT2G06390 transposable element gene -0.372 0.504
98 266102_at AT2G40720 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.366 -0.129
99 260515_at AT1G51460 ABCG13, ATP-binding cassette G13 -0.365 0.613
100 263746_at AT2G21460 [copia-like retrotransposon family, has a 1.3e-303 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)] -0.364 -1.002
101 258465_at AT3G17220 ATPMEI2, PMEI2, pectin methylesterase inhibitor 2 -0.360 -0.163
102 265714_at AT2G03520 ATUPS4, ureide permease 4, UPS4, ureide permease 4 -0.360 0.214
103 266498_at AT2G06960 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.357 -0.966
104 252017_at AT3G52970 CYP76G1, cytochrome P450, family 76, subfamily G, polypeptide 1 -0.353 -0.496
105 258574_at AT3G04250 [F-box associated ubiquitination effector family protein] -0.350 -0.087
106 253821_at AT4G28380 [Leucine-rich repeat (LRR) family protein] -0.348 -0.406
107 261559_at AT1G01780 PLIM2b, PLIM2b -0.348 -0.710
108 260437_at AT1G68380 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.346 -1.034
109 255612_at AT4G01240 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.343 0.552
110 256614_at AT3G29300 unknown -0.343 -0.173
111 257550_at AT3G18460 [PLAC8 family protein] -0.341 -0.337
112 263577_at AT2G17090 BSK12, brassinosteroid-signaling kinase 12, SSP, SHORT SUSPENSOR -0.340 0.077
113 259533_at AT1G12530 MOS9, modifier of snc1 9 -0.339 -0.110
114 246557_at AT5G15510 [TPX2 (targeting protein for Xklp2) protein family] -0.339 0.039
115 259828_at AT1G72220 [RING/U-box superfamily protein] -0.332 -0.329
116 246757_at AT5G27940 WPP3, WPP domain protein 3 -0.327 0.582
117 246649_at AT5G35150 [CACTA-like transposase family (Ptta/En/Spm), has a 1.6e-26 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.326 -0.588
118 261975_at AT1G64640 AtENODL8, ENODL8, early nodulin-like protein 8 -0.324 -0.261
119 267397_at AT1G76170 [2-thiocytidine tRNA biosynthesis protein, TtcA] -0.323 0.401
120 266783_at AT2G29130 ATLAC2, LAC2, laccase 2 -0.323 -0.902
121 250091_at AT5G17340 [Putative membrane lipoprotein] -0.321 -0.324
122 246203_at AT4G36610 [alpha/beta-Hydrolases superfamily protein] -0.318 -0.132
123 246459_at AT5G16900 [Leucine-rich repeat protein kinase family protein] -0.318 -0.630
124 260886_at AT1G29200 [O-fucosyltransferase family protein] -0.316 -0.377
125 254692_at AT4G17860 unknown -0.316 0.089
126 252583_at AT3G45540 [RING/U-box protein with C6HC-type zinc finger] -0.313 -0.736
127 248371_at AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 -0.313 -0.347
128 263673_at AT2G04800 unknown -0.311 0.132
129 262325_at AT1G64160 AtDIR5, DIR5, dirigent protein 5 -0.310 -0.660
130 258204_at AT3G13960 AtGRF5, growth-regulating factor 5, GRF5, growth-regulating factor 5 -0.310 -1.008
131 250568_at AT5G08110 [nucleic acid binding] -0.309 -0.171
132 245648_at AT1G24938 unknown -0.309 -0.329
133 264697_at AT1G70210 ATCYCD1;1, CYCD1;1, CYCLIN D1;1 -0.308 -0.652
134 256924_at AT3G29590 AT5MAT -0.307 0.107
135 247096_at AT5G66430 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.306 -0.870