4.0:Information of module
mpk6-ko H2O 4h
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006139 nucleobase-containing compound metabolic... BP 5.556e-03
GO:1901360 organic cyclic compound metabolic proces... BP 5.863e-03
GO:0006725 cellular aromatic compound metabolic pro... BP 8.606e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009556 microsporogenesis BP 4.495e-04
GO:0048236 plant-type spore development BP 5.957e-04
GO:0071554 cell wall organization or biogenesis BP 9.046e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
mpk6-ko H2O 4h		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg)
1 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.408 -0.553
2 245504_at AT4G15660 [Thioredoxin superfamily protein] 0.407 -0.315
3 250006_at AT5G18660 PCB2, PALE-GREEN AND CHLOROPHYLL B REDUCED 2 0.393 -0.647
4 256383_at AT1G66820 [glycine-rich protein] 0.390 1.228
5 247345_at AT5G63760 ARI15, ARIADNE 15, ATARI15, ARABIDOPSIS ARIADNE 15 0.382 -0.314
6 257999_at AT3G27540 [beta-1,4-N-acetylglucosaminyltransferase family protein] 0.377 0.639
7 259444_at AT1G02370 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.359 0.093
8 267299_at AT2G30150 [UDP-Glycosyltransferase superfamily protein] 0.356 -0.128
9 249047_at AT5G44410 [FAD-binding Berberine family protein] 0.351 -0.145
10 259661_at AT1G55265 unknown 0.348 -1.173
11 262876_at AT1G64750 ATDSS1(I), deletion of SUV3 suppressor 1(I), DSS1(I), deletion of SUV3 suppressor 1(I) 0.346 1.121
12 251507_at AT3G59080 [Eukaryotic aspartyl protease family protein] 0.345 -0.379
13 266510_at AT2G47990 EDA13, EMBRYO SAC DEVELOPMENT ARREST 13, EDA19, EMBRYO SAC DEVELOPMENT ARREST 19, SWA1, SLOW WALKER1 0.331 1.392
14 256890_at AT3G23830 AtGRP4, GR-RBP4, GRP4, glycine-rich RNA-binding protein 4 0.330 0.513
15 253482_at AT4G31985 [Ribosomal protein L39 family protein] 0.330 0.704
16 253538_at AT4G31460 [Ribosomal L28 family] 0.327 0.117
17 258063_at AT3G14620 CYP72A8, cytochrome P450, family 72, subfamily A, polypeptide 8 0.327 -0.094
18 256042_at AT1G07220 unknown 0.323 0.906
19 264806_at AT1G08610 [Pentatricopeptide repeat (PPR) superfamily protein] 0.323 -0.896
20 264731_at AT1G62150 [Mitochondrial transcription termination factor family protein] 0.323 -0.017
21 254431_at AT4G20840 [FAD-binding Berberine family protein] 0.316 -0.782
22 258437_at AT3G16560 [Protein phosphatase 2C family protein] 0.315 0.178
23 249330_at AT5G40970 unknown 0.315 -0.604
24 250459_at AT5G09860 AtHPR1, AtTHO1, HPR1, THO1 0.312 -0.089
25 264625_at AT1G09020 ATSNF4, SNF4, homolog of yeast sucrose nonfermenting 4 0.311 -0.898
26 248853_at AT5G46570 BSK2, brassinosteroid-signaling kinase 2 0.306 0.840
27 263579_at AT2G17030 unknown 0.304 0.293
28 264920_at AT1G60550 DHNS, ECHID, enoyl-CoA hydratase/isomerase D 0.303 -0.004
29 257310_at AT3G26560 [ATP-dependent RNA helicase, putative] 0.303 0.880
30 259899_at AT1G71210 [Pentatricopeptide repeat (PPR) superfamily protein] 0.303 -1.195
31 255039_at AT4G09570 ATCPK4, CPK4, calcium-dependent protein kinase 4 0.298 0.765
32 251621_at AT3G57700 [Protein kinase superfamily protein] 0.296 -0.235
33 261112_at AT1G75420 [UDP-Glycosyltransferase superfamily protein] 0.295 0.647
34 252482_at AT3G46670 UGT76E11, UDP-glucosyl transferase 76E11 0.292 -0.694
35 266567_at AT2G24050 eIFiso4G2, eukaryotic translation Initiation Factor isoform 4G2 0.291 0.702
36 254652_at AT4G18170 ATWRKY28, WRKY28, WRKY DNA-binding protein 28 0.291 -0.242
37 261255_at AT1G05900 ATNTH2, NTH2, endonuclease III 2 0.289 0.235
38 264540_at AT1G55630 [Pentatricopeptide repeat (PPR) superfamily protein] 0.287 0.321
39 254320_at AT4G22580 [Exostosin family protein] 0.286 -0.332
40 248961_at AT5G45650 [subtilase family protein] 0.285 0.244
41 248533_at AT5G50020 [DHHC-type zinc finger family protein] 0.285 -0.396
42 246516_at AT5G15740 [O-fucosyltransferase family protein] 0.283 0.593
43 266946_at AT2G18890 [Protein kinase superfamily protein] 0.282 0.234
44 259677_at AT1G77740 PIP5K2, phosphatidylinositol-4-phosphate 5-kinase 2 0.279 -0.207
45 256916_at AT3G24050 GATA1, GATA transcription factor 1 0.273 0.955
46 251028_at AT5G02230 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.270 0.676
47 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] 0.270 -0.826
48 263632_at AT2G04795 unknown 0.268 0.223
49 261055_at AT1G01300 [Eukaryotic aspartyl protease family protein] 0.268 0.536
50 247098_at AT5G66470 [RNA binding] 0.264 0.459
51 259763_at AT1G77630 LYM3, lysin-motif (LysM) domain protein 3, LYP3, LysM-containing receptor protein 3 0.260 -0.699
52 266705_at AT2G19750 [Ribosomal protein S30 family protein] 0.259 0.475
53 266903_at AT2G34570 MEE21, maternal effect embryo arrest 21 0.259 0.318
54 260722_at AT1G48040 [Protein phosphatase 2C family protein] 0.258 -0.609
55 254508_at AT4G20170 GALS3, galactan synthase 3 0.256 -0.170
56 262590_at AT1G15100 RHA2A, RING-H2 finger A2A 0.256 -0.209
57 253574_at AT4G31030 [Putative membrane lipoprotein] 0.254 -0.021
58 253233_at AT4G34290 [SWIB/MDM2 domain superfamily protein] 0.253 0.360
59 264441_at AT1G27435 unknown 0.253 0.667
60 266882_at AT2G44670 unknown 0.252 -0.035
61 246021_at AT5G21100 [Plant L-ascorbate oxidase] 0.251 -0.548
62 248328_at AT5G52660 [Homeodomain-like superfamily protein] 0.250 -0.271
63 252453_at AT3G47120 [RNA recognition motif (RRM)-containing protein] 0.247 -0.056
64 266889_at AT2G44640 unknown 0.244 0.093
65 252875_at AT4G39990 ATGB3, GTP-BINDING PROTEIN 3, ATRAB11G, ATRABA4B, ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, RABA4B, RAB GTPase homolog A4B 0.243 1.361
66 262821_at AT1G11800 [endonuclease/exonuclease/phosphatase family protein] 0.239 0.232
67 250146_at AT5G14660 ATDEF2, DEF2, PDF1B, peptide deformylase 1B 0.239 -0.057
68 257314_at AT3G26590 [MATE efflux family protein] 0.239 0.344
69 255334_at AT4G04420 [copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] -0.621 -1.129
70 249634_at AT5G36840 unknown -0.597 -0.456
71 259702_at AT1G77780 [Glycosyl hydrolase superfamily protein] -0.565 -0.081
72 260344_at AT1G69240 ATMES15, ARABIDOPSIS THALIANA METHYL ESTERASE 15, MES15, methyl esterase 15, RHS9, ROOT HAIR SPECIFIC 9 -0.554 0.372
73 263069_at AT2G17590 [Cysteine/Histidine-rich C1 domain family protein] -0.531 -0.132
74 246425_at AT5G17420 ATCESA7, CESA7, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, IRX3, IRREGULAR XYLEM 3, MUR10, MURUS 10 -0.506 0.673
75 259796_at AT1G64270 [Mutator-like transposase family, has a 1.0e-06 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -0.493 -0.063
76 261929_at AT1G22460 [O-fucosyltransferase family protein] -0.471 -0.290
77 251608_at AT3G57860 GIG1, GIGAS CELL 1, OSD1, OMISSION OF SECOND DIVISION, UVI4-LIKE, UV-B-insensitive 4-like -0.463 0.659
78 260796_at AT1G78360 ATGSTU21, glutathione S-transferase TAU 21, GSTU21, glutathione S-transferase TAU 21 -0.462 -0.525
79 265114_at AT1G62440 LRX2, leucine-rich repeat/extensin 2 -0.453 -0.732
80 263979_at AT2G42840 PDF1, protodermal factor 1 -0.446 0.090
81 266139_at AT2G28085 SAUR42, SMALL AUXIN UPREGULATED RNA 42 -0.438 0.432
82 265536_at AT2G15880 [Leucine-rich repeat (LRR) family protein] -0.434 0.353
83 257915_at AT3G23130 FLO10, FLORAL DEFECTIVE 10, FON1, FLORAL ORGAN NUMBER 1, SUP, SUPERMAN -0.423 0.241
84 263566_at AT2G15340 [glycine-rich protein] -0.423 -0.207
85 265482_at AT2G15780 [Cupredoxin superfamily protein] -0.417 -0.449
86 262764_at AT1G13140 CYP86C3, cytochrome P450, family 86, subfamily C, polypeptide 3 -0.415 0.299
87 267585_s_at AT2G42090 ACT9, actin 9 -0.410 -0.747
88 247170_at AT5G65530 [Protein kinase superfamily protein] -0.395 0.430
89 258083_at AT3G25855 [Copper transport protein family] -0.394 -0.861
90 258675_at AT3G08770 LTP6, lipid transfer protein 6 -0.383 0.457
91 247097_at AT5G66460 AtMAN7, MAN7, endo-beta-mannase 7 -0.381 0.296
92 256147_at AT1G55080 MED9 -0.380 1.056
93 249946_at AT5G19170 unknown -0.379 -0.755
94 246693_at AT5G29070 unknown -0.377 -0.649
95 245143_at AT2G45450 ZPR1, LITTLE ZIPPER 1 -0.375 -0.439
96 259167_at AT3G01570 [Oleosin family protein] -0.373 -0.738
97 263769_at AT2G06390 transposable element gene -0.372 0.420
98 266102_at AT2G40720 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.366 -0.149
99 260515_at AT1G51460 ABCG13, ATP-binding cassette G13 -0.365 0.530
100 263746_at AT2G21460 [copia-like retrotransposon family, has a 1.3e-303 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)] -0.364 -1.004
101 258465_at AT3G17220 ATPMEI2, PMEI2, pectin methylesterase inhibitor 2 -0.360 -0.184
102 265714_at AT2G03520 ATUPS4, ureide permease 4, UPS4, ureide permease 4 -0.360 0.205
103 266498_at AT2G06960 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.357 -1.053
104 252017_at AT3G52970 CYP76G1, cytochrome P450, family 76, subfamily G, polypeptide 1 -0.353 -0.740
105 258574_at AT3G04250 [F-box associated ubiquitination effector family protein] -0.350 -0.042
106 253821_at AT4G28380 [Leucine-rich repeat (LRR) family protein] -0.348 -0.435
107 261559_at AT1G01780 PLIM2b, PLIM2b -0.348 -0.820
108 260437_at AT1G68380 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.346 -1.038
109 255612_at AT4G01240 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.343 0.588
110 256614_at AT3G29300 unknown -0.343 -0.298
111 257550_at AT3G18460 [PLAC8 family protein] -0.341 -0.418
112 263577_at AT2G17090 BSK12, brassinosteroid-signaling kinase 12, SSP, SHORT SUSPENSOR -0.340 0.188
113 259533_at AT1G12530 MOS9, modifier of snc1 9 -0.339 -0.133
114 246557_at AT5G15510 [TPX2 (targeting protein for Xklp2) protein family] -0.339 -0.015
115 259828_at AT1G72220 [RING/U-box superfamily protein] -0.332 -0.310
116 246757_at AT5G27940 WPP3, WPP domain protein 3 -0.327 0.617
117 246649_at AT5G35150 [CACTA-like transposase family (Ptta/En/Spm), has a 1.6e-26 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.326 -0.526
118 261975_at AT1G64640 AtENODL8, ENODL8, early nodulin-like protein 8 -0.324 -0.243
119 267397_at AT1G76170 [2-thiocytidine tRNA biosynthesis protein, TtcA] -0.323 0.393
120 266783_at AT2G29130 ATLAC2, LAC2, laccase 2 -0.323 -0.865
121 250091_at AT5G17340 [Putative membrane lipoprotein] -0.321 -0.426
122 246203_at AT4G36610 [alpha/beta-Hydrolases superfamily protein] -0.318 -0.332
123 246459_at AT5G16900 [Leucine-rich repeat protein kinase family protein] -0.318 -0.448
124 260886_at AT1G29200 [O-fucosyltransferase family protein] -0.316 -0.447
125 254692_at AT4G17860 unknown -0.316 0.152
126 252583_at AT3G45540 [RING/U-box protein with C6HC-type zinc finger] -0.313 -0.707
127 248371_at AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 -0.313 -0.345
128 263673_at AT2G04800 unknown -0.311 0.135
129 262325_at AT1G64160 AtDIR5, DIR5, dirigent protein 5 -0.310 -0.707
130 258204_at AT3G13960 AtGRF5, growth-regulating factor 5, GRF5, growth-regulating factor 5 -0.310 -1.176
131 250568_at AT5G08110 [nucleic acid binding] -0.309 -0.184
132 245648_at AT1G24938 unknown -0.309 -0.105
133 264697_at AT1G70210 ATCYCD1;1, CYCD1;1, CYCLIN D1;1 -0.308 -0.739
134 256924_at AT3G29590 AT5MAT -0.307 0.225
135 247096_at AT5G66430 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.306 -0.844