4.0:Information of module
erf104-ko H2O 4h
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006457 protein folding BP 2.649e-08
GO:0042542 response to hydrogen peroxide BP 4.906e-08
GO:0009644 response to high light intensity BP 1.569e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042542 response to hydrogen peroxide BP 2.176e-04
GO:0000302 response to reactive oxygen species BP 2.968e-04
GO:0010228 vegetative to reproductive phase transit... BP 4.078e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
erf104-ko H2O 4h		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg)
1 262307_at AT1G71000 [Chaperone DnaJ-domain superfamily protein] 0.868 0.096
2 245504_at AT4G15660 [Thioredoxin superfamily protein] 0.835 -0.315
3 258947_at AT3G01830 [Calcium-binding EF-hand family protein] 0.762 -1.093
4 260408_at AT1G69880 ATH8, thioredoxin H-type 8, TH8, thioredoxin H-type 8 0.758 -0.097
5 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] 0.757 -0.457
6 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 0.731 0.453
7 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 0.696 0.920
8 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A 0.679 0.128
9 266841_at AT2G26150 ATHSFA2, heat shock transcription factor A2, HSFA2, heat shock transcription factor A2 0.676 -0.464
10 251699_at AT3G56630 CYP94D2, cytochrome P450, family 94, subfamily D, polypeptide 2 0.668 -0.888
11 253835_at AT4G27820 BGLU9, beta glucosidase 9 0.667 -0.620
12 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 0.658 0.119
13 249271_at AT5G41790 CIP1, COP1-interactive protein 1 0.652 0.495
14 264698_at AT1G70200 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.646 -0.920
15 250006_at AT5G18660 PCB2, PALE-GREEN AND CHLOROPHYLL B REDUCED 2 0.642 -0.647
16 257798_at AT3G15950 NAI2 0.642 1.122
17 263549_at AT2G21650 ATRL2, ARABIDOPSIS RAD-LIKE 2, MEE3, MATERNAL EFFECT EMBRYO ARREST 3, RSM1, RADIALIS-LIKE SANT/MYB 1 0.639 0.154
18 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 0.636 -0.501
19 262236_at AT1G48330 unknown 0.635 0.838
20 250794_at AT5G05270 AtCHIL, CHIL, chalcone isomerase like 0.621 0.275
21 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 0.611 -0.971
22 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 0.595 -1.056
23 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 0.591 -0.172
24 248853_at AT5G46570 BSK2, brassinosteroid-signaling kinase 2 0.590 0.840
25 258537_at AT3G04210 [Disease resistance protein (TIR-NBS class)] 0.587 0.300
26 250975_at AT5G03050 unknown 0.586 -0.214
27 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 0.583 0.818
28 256096_at AT1G13650 unknown 0.575 -0.522
29 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.574 -0.553
30 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] 0.574 -0.984
31 246403_at AT1G57590 [Pectinacetylesterase family protein] 0.562 1.004
32 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 0.561 0.817
33 250207_at AT5G13930 ATCHS, CHS, CHALCONE SYNTHASE, TT4, TRANSPARENT TESTA 4 0.558 0.587
34 264958_at AT1G76960 unknown 0.551 -0.695
35 253614_at AT4G30350 SMXL2, SMAX1-like 2 0.544 -0.239
36 266820_at AT2G44940 [Integrase-type DNA-binding superfamily protein] 0.538 -0.135
37 263800_at AT2G24600 [Ankyrin repeat family protein] 0.530 0.552
38 255913_at AT1G66980 GDPDL2, Glycerophosphodiester phosphodiesterase (GDPD) like 2, SNC4, suppressor of npr1-1 constitutive 4 0.530 -1.205
39 262693_at AT1G62780 unknown 0.528 -0.263
40 255302_at AT4G04830 ATMSRB5, methionine sulfoxide reductase B5, MSRB5, methionine sulfoxide reductase B5 0.524 0.417
41 251054_at AT5G01540 LecRK-VI.2, L-type lectin receptor kinase-VI.2, LECRKA4.1, lectin receptor kinase a4.1 0.518 -0.201
42 266903_at AT2G34570 MEE21, maternal effect embryo arrest 21 0.518 0.318
43 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] 0.518 -1.147
44 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 0.514 -0.034
45 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 0.512 0.013
46 252859_at AT4G39780 [Integrase-type DNA-binding superfamily protein] 0.506 -0.032
47 245506_at AT4G15700 [Thioredoxin superfamily protein] 0.505 -0.791
48 257262_at AT3G21890 BBX31, B-box domain protein 31 0.502 -0.067
49 256383_at AT1G66820 [glycine-rich protein] 0.499 1.228
50 246405_at AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.496 -0.413
51 257925_at AT3G23170 unknown 0.489 0.618
52 244938_at ATCG01120 RPS15, chloroplast ribosomal protein S15 0.487 -0.167
53 261804_at AT1G30530 UGT78D1, UDP-glucosyl transferase 78D1 0.484 -0.158
54 258349_at AT3G17609 HYH, HY5-homolog 0.483 -0.517
55 258566_at AT3G04110 ATGLR1.1, GLR1, GLUTAMATE RECEPTOR 1, GLR1.1, glutamate receptor 1.1 0.482 -0.795
56 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 0.479 0.413
57 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.478 -0.483
58 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 0.477 -0.282
59 257203_at AT3G23730 XTH16, xyloglucan endotransglucosylase/hydrolase 16 0.477 0.600
60 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.473 0.055
61 245937_at AT5G19750 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] 0.470 0.097
62 251832_at AT3G55150 ATEXO70H1, exocyst subunit exo70 family protein H1, EXO70H1, exocyst subunit exo70 family protein H1 0.469 0.060
63 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.469 -0.886
64 259899_at AT1G71210 [Pentatricopeptide repeat (PPR) superfamily protein] 0.464 -1.195
65 253884_at AT4G27670 HSP21, heat shock protein 21 -0.850 0.112
66 258695_at AT3G09640 APX1B, ASCORBATE PEROXIDASE 1B, APX2, ascorbate peroxidase 2 -0.783 -0.308
67 262603_at AT1G15380 GLYI4, glyoxylase I 4 -0.672 -0.697
68 260770_at AT1G49200 [RING/U-box superfamily protein] -0.666 -1.038
69 249065_at AT5G44260 AtTZF5, TZF5, Tandem CCCH Zinc Finger protein 5 -0.634 -0.824
70 264788_at AT2G17880 DJC24, DNA J protein C24 -0.632 -0.005
71 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 -0.615 -0.040
72 259398_at AT1G17700 PRA1.F1, prenylated RAB acceptor 1.F1 -0.612 -0.977
73 250624_at AT5G07330 unknown -0.600 0.028
74 254263_at AT4G23493 unknown -0.595 0.927
75 263019_at AT1G23870 ATTPS9, trehalose-phosphatase/synthase 9, TPS9, TREHALOSE -6-PHOSPHATASE SYNTHASE S9, TPS9, trehalose-phosphatase/synthase 9 -0.592 0.597
76 255050_at AT4G09700 unknown -0.579 -0.025
77 253373_at AT4G33150 LKR, LKR/SDH, LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE, SDH, SACCHAROPINE DEHYDROGENASE -0.543 0.717
78 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 -0.541 0.462
79 254336_at AT4G22050 [Eukaryotic aspartyl protease family protein] -0.538 0.115
80 249794_at AT5G23530 AtCXE18, carboxyesterase 18, CXE18, carboxyesterase 18 -0.529 0.426
81 254635_at AT4G18670 [Leucine-rich repeat (LRR) family protein] -0.524 0.345
82 262977_at AT1G75490 [Integrase-type DNA-binding superfamily protein] -0.517 -0.026
83 247951_at AT5G57240 ORP4C, OSBP(oxysterol binding protein)-related protein 4C -0.508 0.149
84 256632_at AT3G28330 [F-box family protein-related] -0.507 0.492
85 259167_at AT3G01570 [Oleosin family protein] -0.504 -0.738
86 247170_at AT5G65530 [Protein kinase superfamily protein] -0.503 0.430
87 245353_at AT4G16000 unknown -0.500 -0.516
88 252178_at AT3G50750 BEH1, BES1/BZR1 homolog 1 -0.496 0.218
89 245558_at AT4G15430 [ERD (early-responsive to dehydration stress) family protein] -0.495 0.435
90 261395_at AT1G79700 WRI4, WRINKLED 4 -0.485 -0.117
91 246565_at AT5G15530 BCCP2, biotin carboxyl carrier protein 2, CAC1-B -0.482 1.173
92 261917_at AT1G65920 [Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain] -0.473 -0.339
93 246693_at AT5G29070 unknown -0.472 -0.649
94 266918_at AT2G45800 PLIM2a, PLIM2a -0.470 -0.783
95 260748_at AT1G49210 [RING/U-box superfamily protein] -0.467 0.190
96 252098_at AT3G51330 [Eukaryotic aspartyl protease family protein] -0.451 0.079
97 251842_at AT3G54580 [Proline-rich extensin-like family protein] -0.443 -0.088
98 246557_at AT5G15510 [TPX2 (targeting protein for Xklp2) protein family] -0.442 -0.015
99 266156_at AT2G28110 FRA8, FRAGILE FIBER 8, IRX7, IRREGULAR XYLEM 7 -0.441 -0.350
100 264100_at AT1G78970 ATLUP1, ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, LUP1, lupeol synthase 1 -0.440 0.632
101 259235_at AT3G11600 unknown -0.438 -0.394
102 250091_at AT5G17340 [Putative membrane lipoprotein] -0.436 -0.426
103 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 -0.436 -0.176
104 254015_at AT4G26140 BGAL12, beta-galactosidase 12 -0.433 -0.775
105 257985_at AT3G20810 JMJ30, Jumonji C domain-containing protein 30, JMJD5, jumonji domain containing 5 -0.433 0.754
106 250373_at AT5G11470 ASI1, ANTI-SILENCING 1, IBM2, Increase in Bonsai Methylation 2 -0.432 -0.756
107 267254_at AT2G23030 SNRK2-9, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNRK2.9, SNF1-related protein kinase 2.9 -0.430 -0.006
108 265345_at AT2G22680 WAVH1, WAV3 homolog 1 -0.430 -0.577
109 253010_at AT4G37750 ANT, AINTEGUMENTA, CKC, CKC1, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, DRG, DRAGON -0.429 -0.493
110 262764_at AT1G13140 CYP86C3, cytochrome P450, family 86, subfamily C, polypeptide 3 -0.420 0.299
111 249415_at AT5G39660 CDF2, cycling DOF factor 2 -0.413 0.501
112 252675_at AT3G44270 [copia-like retrotransposon family, has a 1.1e-26 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] -0.399 0.531
113 262148_at AT1G52560 [HSP20-like chaperones superfamily protein] -0.398 -1.409
114 260415_at AT1G69790 [Protein kinase superfamily protein] -0.394 0.402
115 265573_at AT2G28200 [C2H2-type zinc finger family protein] -0.391 -0.263
116 245648_at AT1G24938 unknown -0.389 -0.105
117 256933_at AT3G22600 LTPG5, glycosylphosphatidylinositol-anchored lipid protein transfer 5 -0.388 0.677
118 249186_at AT5G43040 [Cysteine/Histidine-rich C1 domain family protein] -0.385 -0.099
119 247352_at AT5G63650 SNRK2-5, SNRK2.5, SNF1-related protein kinase 2.5, SRK2H, SNF1-RELATED PROTEIN KINASE 2H -0.378 -0.290
120 264311_at AT1G70400 unknown -0.370 -0.681
121 259984_at AT1G76460 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.370 -0.292
122 259994_at AT1G68130 AtIDD14, indeterminate(ID)-domain 14, IDD14, indeterminate(ID)-domain 14, IDD14alpha, IDD14beta -0.369 -0.261
123 258745_at AT3G05920 [Heavy metal transport/detoxification superfamily protein ] -0.367 -0.207
124 255741_at AT1G25410 ATIPT6, ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 6, IPT6, isopentenyltransferase 6 -0.367 0.558
125 262010_at AT1G35612 [expressed protein] -0.365 0.593
126 259963_at AT1G53660 [nodulin MtN21 /EamA-like transporter family protein] -0.362 -0.423
127 249869_at AT5G23050 AAE17, acyl-activating enzyme 17 -0.360 -0.182