4.0:Information of module
35S::ERF104 H2O 4h
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 22 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0080134 regulation of response to stress BP 1.225e-06
GO:0009751 response to salicylic acid BP 1.453e-06
GO:0031348 negative regulation of defense response BP 1.768e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042542 response to hydrogen peroxide BP 2.252e-05
GO:0009644 response to high light intensity BP 4.707e-04
GO:0009987 cellular process BP 9.356e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
35S::ERF104 H2O 4h		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 22 hrs Taking 70 mm of Stump (4dpg)
1 249052_at AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A 1.365 0.679
2 257365_x_at AT2G26020 PDF1.2b, plant defensin 1.2b 1.216 -0.701
3 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 1.128 0.015
4 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 0.952 -0.408
5 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 0.927 0.747
6 247543_at AT5G61600 ERF104, ethylene response factor 104 0.904 0.404
7 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A 0.853 0.189
8 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] 0.800 -0.413
9 253911_at AT4G27300 [S-locus lectin protein kinase family protein] 0.796 -0.419
10 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 0.767 0.134
11 264698_at AT1G70200 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.743 -0.793
12 255753_at AT1G18570 AtMYB51, myb domain protein 51, BW51A, BW51B, HIG1, HIGH INDOLIC GLUCOSINOLATE 1, MYB51, myb domain protein 51 0.731 0.092
13 247487_at AT5G62150 [peptidoglycan-binding LysM domain-containing protein] 0.685 -0.129
14 249271_at AT5G41790 CIP1, COP1-interactive protein 1 0.681 0.331
15 245504_at AT4G15660 [Thioredoxin superfamily protein] 0.681 -0.329
16 260408_at AT1G69880 ATH8, thioredoxin H-type 8, TH8, thioredoxin H-type 8 0.680 -0.002
17 251699_at AT3G56630 CYP94D2, cytochrome P450, family 94, subfamily D, polypeptide 2 0.651 -0.911
18 257798_at AT3G15950 NAI2 0.650 1.064
19 258064_at AT3G14680 CYP72A14, cytochrome P450, family 72, subfamily A, polypeptide 14 0.641 -0.720
20 250006_at AT5G18660 PCB2, PALE-GREEN AND CHLOROPHYLL B REDUCED 2 0.640 -0.661
21 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 0.635 0.207
22 258100_at AT3G23550 [MATE efflux family protein] 0.629 -0.077
23 253835_at AT4G27820 BGLU9, beta glucosidase 9 0.629 -0.713
24 262236_at AT1G48330 unknown 0.624 0.908
25 263549_at AT2G21650 ATRL2, ARABIDOPSIS RAD-LIKE 2, MEE3, MATERNAL EFFECT EMBRYO ARREST 3, RSM1, RADIALIS-LIKE SANT/MYB 1 0.616 0.101
26 256096_at AT1G13650 unknown 0.611 -0.547
27 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 0.604 0.781
28 250975_at AT5G03050 unknown 0.597 -0.147
29 258537_at AT3G04210 [Disease resistance protein (TIR-NBS class)] 0.592 0.394
30 252165_at AT3G50550 unknown 0.589 0.580
31 249071_at AT5G44050 [MATE efflux family protein] 0.588 -0.768
32 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 0.585 -0.942
33 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 0.579 0.245
34 267637_at AT2G42190 unknown 0.578 0.207
35 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 0.576 -0.255
36 262693_at AT1G62780 unknown 0.574 -0.350
37 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 0.574 -0.555
38 263800_at AT2G24600 [Ankyrin repeat family protein] 0.572 0.475
39 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.567 0.078
40 248186_at AT5G53880 unknown 0.546 0.198
41 260974_at AT1G53440 [Leucine-rich repeat transmembrane protein kinase] 0.528 -0.552
42 253614_at AT4G30350 SMXL2, SMAX1-like 2 0.517 -0.179
43 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.512 -0.463
44 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] 0.509 -0.406
45 260083_at AT1G63220 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.508 0.745
46 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 0.506 0.083
47 266799_at AT2G22860 ATPSK2, phytosulfokine 2 precursor, PSK2, phytosulfokine 2 precursor 0.504 -0.103
48 248853_at AT5G46570 BSK2, brassinosteroid-signaling kinase 2 0.498 0.545
49 246403_at AT1G57590 [Pectinacetylesterase family protein] 0.497 0.784
50 255913_at AT1G66980 GDPDL2, Glycerophosphodiester phosphodiesterase (GDPD) like 2, SNC4, suppressor of npr1-1 constitutive 4 0.495 -1.223
51 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 0.493 -0.326
52 262913_at AT1G59960 [NAD(P)-linked oxidoreductase superfamily protein] 0.483 0.872
53 251054_at AT5G01540 LecRK-VI.2, L-type lectin receptor kinase-VI.2, LECRKA4.1, lectin receptor kinase a4.1 0.480 -0.330
54 266903_at AT2G34570 MEE21, maternal effect embryo arrest 21 0.480 0.434
55 258566_at AT3G04110 ATGLR1.1, GLR1, GLUTAMATE RECEPTOR 1, GLR1.1, glutamate receptor 1.1 0.479 -0.800
56 266820_at AT2G44940 [Integrase-type DNA-binding superfamily protein] 0.478 -0.050
57 264479_at AT1G77280 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] 0.472 -1.138
58 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] 0.468 -1.116
59 254410_at AT4G21410 CRK29, cysteine-rich RLK (RECEPTOR-like protein kinase) 29 0.467 0.726
60 263565_at AT2G15390 atfut4, FUT4, fucosyltransferase 4 0.465 -0.964
61 251336_at AT3G61190 BAP1, BON association protein 1 0.464 -0.484
62 264590_at AT2G17710 unknown 0.456 0.620
63 260831_at AT1G06830 [Glutaredoxin family protein] 0.456 -0.575
64 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 0.455 0.308
65 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 0.455 -0.987
66 261804_at AT1G30530 UGT78D1, UDP-glucosyl transferase 78D1 0.450 -0.387
67 267010_at AT2G39250 SNZ, SCHNARCHZAPFEN 0.450 -0.818
68 256060_at AT1G07050 [CCT motif family protein] 0.447 0.357
69 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] 0.444 0.249
70 259272_at AT3G01290 AtHIR2, HIR2, hypersensitive induced reaction 2 0.444 0.674
71 246997_at AT5G67390 unknown 0.443 0.008
72 252470_at AT3G46930 [Protein kinase superfamily protein] 0.443 0.301
73 255786_at AT1G19670 ATCLH1, chlorophyllase 1, ATHCOR1, CORONATINE-INDUCED PROTEIN 1, CLH1, chlorophyllase 1, CORI1, CORONATINE-INDUCED PROTEIN 1 0.442 -0.569
74 255923_at AT1G22180 [Sec14p-like phosphatidylinositol transfer family protein] 0.439 -0.178
75 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 0.438 0.003
76 256383_at AT1G66820 [glycine-rich protein] 0.437 1.229
77 264583_at AT1G05170 [Galactosyltransferase family protein] 0.436 -0.212
78 253657_at AT4G30110 ATHMA2, ARABIDOPSIS HEAVY METAL ATPASE 2, HMA2, heavy metal atpase 2 0.431 -0.982
79 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.430 -0.498
80 248961_at AT5G45650 [subtilase family protein] 0.430 0.295
81 259899_at AT1G71210 [Pentatricopeptide repeat (PPR) superfamily protein] 0.429 -1.301
82 253884_at AT4G27670 HSP21, heat shock protein 21 -0.901 0.109
83 258695_at AT3G09640 APX1B, ASCORBATE PEROXIDASE 1B, APX2, ascorbate peroxidase 2 -0.788 -0.377
84 260770_at AT1G49200 [RING/U-box superfamily protein] -0.740 -1.019
85 248509_at AT5G50335 unknown -0.711 -0.423
86 251791_at AT3G55500 ATEXP16, ATEXPA16, expansin A16, ATHEXP ALPHA 1.7, EXP16, EXPANSIN 16, EXPA16, expansin A16 -0.699 -0.122
87 250624_at AT5G07330 unknown -0.675 0.002
88 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 -0.663 -0.023
89 249454_at AT5G39520 unknown -0.655 -0.210
90 250155_at AT5G15160 BHLH134, BASIC HELIX-LOOP-HELIX PROTEIN 134, BNQ2, BANQUO 2 -0.608 0.089
91 254635_at AT4G18670 [Leucine-rich repeat (LRR) family protein] -0.600 0.358
92 260515_at AT1G51460 ABCG13, ATP-binding cassette G13 -0.600 0.613
93 245171_at AT2G47560 [RING/U-box superfamily protein] -0.595 -0.399
94 255050_at AT4G09700 unknown -0.591 -0.102
95 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] -0.589 -0.109
96 256632_at AT3G28330 [F-box family protein-related] -0.576 0.517
97 254263_at AT4G23493 unknown -0.567 0.781
98 264788_at AT2G17880 DJC24, DNA J protein C24 -0.563 -0.056
99 262603_at AT1G15380 GLYI4, glyoxylase I 4 -0.553 -0.585
100 264551_at AT1G09460 [Carbohydrate-binding X8 domain superfamily protein] -0.547 -0.647
101 263019_at AT1G23870 ATTPS9, trehalose-phosphatase/synthase 9, TPS9, TREHALOSE -6-PHOSPHATASE SYNTHASE S9, TPS9, trehalose-phosphatase/synthase 9 -0.543 0.532
102 246565_at AT5G15530 BCCP2, biotin carboxyl carrier protein 2, CAC1-B -0.543 1.142
103 262764_at AT1G13140 CYP86C3, cytochrome P450, family 86, subfamily C, polypeptide 3 -0.542 0.314
104 256933_at AT3G22600 LTPG5, glycosylphosphatidylinositol-anchored lipid protein transfer 5 -0.540 0.827
105 263543_at AT2G21610 ATPE11, A. THALIANA PECTINESTERASE 11, PE11, pectinesterase 11 -0.539 0.878
106 254336_at AT4G22050 [Eukaryotic aspartyl protease family protein] -0.533 0.127
107 263979_at AT2G42840 PDF1, protodermal factor 1 -0.522 0.170
108 259167_at AT3G01570 [Oleosin family protein] -0.521 -0.719
109 256937_at AT3G22620 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.519 0.179
110 255741_at AT1G25410 ATIPT6, ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 6, IPT6, isopentenyltransferase 6 -0.513 0.461
111 264079_at AT2G28490 [RmlC-like cupins superfamily protein] -0.511 -0.064
112 247951_at AT5G57240 ORP4C, OSBP(oxysterol binding protein)-related protein 4C -0.510 0.178
113 262977_at AT1G75490 [Integrase-type DNA-binding superfamily protein] -0.509 0.000
114 259235_at AT3G11600 unknown -0.507 -0.394
115 260437_at AT1G68380 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.505 -1.034
116 249784_at AT5G24280 GMI1, GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 -0.504 0.874
117 249415_at AT5G39660 CDF2, cycling DOF factor 2 -0.503 0.519
118 245353_at AT4G16000 unknown -0.502 -0.479
119 257985_at AT3G20810 JMJ30, Jumonji C domain-containing protein 30, JMJD5, jumonji domain containing 5 -0.500 0.944
120 260914_at AT1G02640 ATBXL2, BETA-XYLOSIDASE 2, BXL2, beta-xylosidase 2 -0.498 -0.359
121 249289_at AT5G41040 ASFT, aliphatic suberin feruloyl-transferase, HHT, hydroxycinnamoyl- CoA:ω-hydroxyacid O-hydroxycinnamoyltransferase, RWP1, REDUCED LEVELS OF WALL-BOUND PHENOLICS 1 -0.491 -0.430
122 266613_at AT2G14900 [Gibberellin-regulated family protein] -0.489 0.505
123 246459_at AT5G16900 [Leucine-rich repeat protein kinase family protein] -0.489 -0.630
124 249794_at AT5G23530 AtCXE18, carboxyesterase 18, CXE18, carboxyesterase 18 -0.484 0.530
125 266918_at AT2G45800 PLIM2a, PLIM2a -0.484 -0.770
126 247170_at AT5G65530 [Protein kinase superfamily protein] -0.479 0.656
127 260748_at AT1G49210 [RING/U-box superfamily protein] -0.478 0.209
128 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related -0.477 0.312
129 247352_at AT5G63650 SNRK2-5, SNRK2.5, SNF1-related protein kinase 2.5, SRK2H, SNF1-RELATED PROTEIN KINASE 2H -0.470 -0.297
130 252882_at AT4G39675 unknown -0.468 0.944
131 250683_x_at AT5G06640 EXT10, extensin 10 -0.462 -0.383
132 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 -0.461 -0.266
133 253066_at AT4G37770 ACS8, 1-amino-cyclopropane-1-carboxylate synthase 8 -0.459 -0.410
134 251842_at AT3G54580 [Proline-rich extensin-like family protein] -0.453 -0.057
135 265345_at AT2G22680 WAVH1, WAV3 homolog 1 -0.445 -0.513
136 262131_at AT1G02900 ATRALF1, RAPID ALKALINIZATION FACTOR 1, RALF1, rapid alkalinization factor 1, RALFL1, RALF-LIKE 1 -0.437 1.406
137 254015_at AT4G26140 BGAL12, beta-galactosidase 12 -0.436 -0.672
138 246203_at AT4G36610 [alpha/beta-Hydrolases superfamily protein] -0.424 -0.132
139 247800_at AT5G58570 unknown -0.421 0.517
140 250682_x_at AT5G06630 [proline-rich extensin-like family protein] -0.416 -0.467
141 267254_at AT2G23030 SNRK2-9, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNRK2.9, SNF1-related protein kinase 2.9 -0.414 -0.042
142 250091_at AT5G17340 [Putative membrane lipoprotein] -0.413 -0.324
143 252178_at AT3G50750 BEH1, BES1/BZR1 homolog 1 -0.412 0.319
144 257306_at AT3G30200 [Plant transposase (Ptta/En/Spm family)] -0.405 0.213
145 257517_at AT3G16330 unknown -0.404 -0.185
146 262771_at AT1G13200 [F-box and associated interaction domains-containing protein] -0.398 0.370
147 260668_at AT1G19530 unknown -0.398 -0.053
148 264775_at AT1G22880 ATCEL5, ARABIDOPSIS THALIANA CELLULASE 5, ATGH9B4, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, CEL5, cellulase 5 -0.394 0.084
149 249234_at AT5G42200 [RING/U-box superfamily protein] -0.394 -0.307
150 251254_at AT3G62270 BOR2, REQUIRES HIGH BORON 2 -0.394 0.091
151 266211_at AT2G06820 unknown -0.391 -0.588
152 245912_at AT5G19600 SULTR3;5, sulfate transporter 3;5 -0.386 0.099
153 260163_at AT1G79900 ATMBAC2, RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, BAC2 -0.386 -0.085
154 266783_at AT2G29130 ATLAC2, LAC2, laccase 2 -0.385 -0.902
155 250483_at AT5G10300 AtHNL, ATMES5, ARABIDOPSIS THALIANA METHYL ESTERASE 5, HNL, HYDROXYNITRILE LYASE, MES5, methyl esterase 5 -0.385 0.949
156 251843_x_at AT3G54590 ATHRGP1, hydroxyproline-rich glycoprotein, HRGP1, hydroxyproline-rich glycoprotein -0.381 0.916
157 265014_at AT1G24430 [HXXXD-type acyl-transferase family protein] -0.381 -0.284
158 263061_at AT2G18190 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.379 -0.131
159 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 -0.373 -0.450
160 266156_at AT2G28110 FRA8, FRAGILE FIBER 8, IRX7, IRREGULAR XYLEM 7 -0.372 -0.257
161 247381_at AT5G63390 [O-fucosyltransferase family protein] -0.372 -0.638
162 263998_at AT2G22510 [hydroxyproline-rich glycoprotein family protein] -0.369 0.260