4.0:Information of module
35S::ERF104 H2O 4h
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0080134 regulation of response to stress BP 1.225e-06
GO:0009751 response to salicylic acid BP 1.453e-06
GO:0031348 negative regulation of defense response BP 1.768e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042542 response to hydrogen peroxide BP 2.252e-05
GO:0009644 response to high light intensity BP 4.707e-04
GO:0009987 cellular process BP 9.356e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
35S::ERF104 H2O 4h		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg)
1 249052_at AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A 1.365 0.772
2 257365_x_at AT2G26020 PDF1.2b, plant defensin 1.2b 1.216 -0.744
3 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 1.128 -0.015
4 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 0.952 -0.326
5 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 0.927 0.430
6 247543_at AT5G61600 ERF104, ethylene response factor 104 0.904 0.400
7 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A 0.853 0.128
8 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] 0.800 -0.457
9 253911_at AT4G27300 [S-locus lectin protein kinase family protein] 0.796 -0.405
10 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 0.767 -0.051
11 264698_at AT1G70200 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.743 -0.920
12 255753_at AT1G18570 AtMYB51, myb domain protein 51, BW51A, BW51B, HIG1, HIGH INDOLIC GLUCOSINOLATE 1, MYB51, myb domain protein 51 0.731 0.019
13 247487_at AT5G62150 [peptidoglycan-binding LysM domain-containing protein] 0.685 -0.238
14 249271_at AT5G41790 CIP1, COP1-interactive protein 1 0.681 0.495
15 245504_at AT4G15660 [Thioredoxin superfamily protein] 0.681 -0.315
16 260408_at AT1G69880 ATH8, thioredoxin H-type 8, TH8, thioredoxin H-type 8 0.680 -0.097
17 251699_at AT3G56630 CYP94D2, cytochrome P450, family 94, subfamily D, polypeptide 2 0.651 -0.888
18 257798_at AT3G15950 NAI2 0.650 1.122
19 258064_at AT3G14680 CYP72A14, cytochrome P450, family 72, subfamily A, polypeptide 14 0.641 -0.890
20 250006_at AT5G18660 PCB2, PALE-GREEN AND CHLOROPHYLL B REDUCED 2 0.640 -0.647
21 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 0.635 0.119
22 258100_at AT3G23550 [MATE efflux family protein] 0.629 -0.101
23 253835_at AT4G27820 BGLU9, beta glucosidase 9 0.629 -0.620
24 262236_at AT1G48330 unknown 0.624 0.838
25 263549_at AT2G21650 ATRL2, ARABIDOPSIS RAD-LIKE 2, MEE3, MATERNAL EFFECT EMBRYO ARREST 3, RSM1, RADIALIS-LIKE SANT/MYB 1 0.616 0.154
26 256096_at AT1G13650 unknown 0.611 -0.522
27 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 0.604 0.920
28 250975_at AT5G03050 unknown 0.597 -0.214
29 258537_at AT3G04210 [Disease resistance protein (TIR-NBS class)] 0.592 0.300
30 252165_at AT3G50550 unknown 0.589 0.635
31 249071_at AT5G44050 [MATE efflux family protein] 0.588 -0.809
32 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 0.585 -0.971
33 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 0.579 0.453
34 267637_at AT2G42190 unknown 0.578 0.235
35 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 0.576 -0.172
36 262693_at AT1G62780 unknown 0.574 -0.263
37 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 0.574 -0.501
38 263800_at AT2G24600 [Ankyrin repeat family protein] 0.572 0.552
39 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.567 0.055
40 248186_at AT5G53880 unknown 0.546 0.197
41 260974_at AT1G53440 [Leucine-rich repeat transmembrane protein kinase] 0.528 -0.542
42 253614_at AT4G30350 SMXL2, SMAX1-like 2 0.517 -0.239
43 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.512 -0.553
44 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] 0.509 -0.324
45 260083_at AT1G63220 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.508 1.033
46 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 0.506 0.162
47 266799_at AT2G22860 ATPSK2, phytosulfokine 2 precursor, PSK2, phytosulfokine 2 precursor 0.504 -0.192
48 248853_at AT5G46570 BSK2, brassinosteroid-signaling kinase 2 0.498 0.840
49 246403_at AT1G57590 [Pectinacetylesterase family protein] 0.497 1.004
50 255913_at AT1G66980 GDPDL2, Glycerophosphodiester phosphodiesterase (GDPD) like 2, SNC4, suppressor of npr1-1 constitutive 4 0.495 -1.205
51 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 0.493 -0.282
52 262913_at AT1G59960 [NAD(P)-linked oxidoreductase superfamily protein] 0.483 0.910
53 251054_at AT5G01540 LecRK-VI.2, L-type lectin receptor kinase-VI.2, LECRKA4.1, lectin receptor kinase a4.1 0.480 -0.201
54 266903_at AT2G34570 MEE21, maternal effect embryo arrest 21 0.480 0.318
55 258566_at AT3G04110 ATGLR1.1, GLR1, GLUTAMATE RECEPTOR 1, GLR1.1, glutamate receptor 1.1 0.479 -0.795
56 266820_at AT2G44940 [Integrase-type DNA-binding superfamily protein] 0.478 -0.135
57 264479_at AT1G77280 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] 0.472 -1.086
58 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] 0.468 -1.147
59 254410_at AT4G21410 CRK29, cysteine-rich RLK (RECEPTOR-like protein kinase) 29 0.467 0.633
60 263565_at AT2G15390 atfut4, FUT4, fucosyltransferase 4 0.465 -0.941
61 251336_at AT3G61190 BAP1, BON association protein 1 0.464 -0.283
62 264590_at AT2G17710 unknown 0.456 0.430
63 260831_at AT1G06830 [Glutaredoxin family protein] 0.456 -0.517
64 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 0.455 0.396
65 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 0.455 -1.056
66 261804_at AT1G30530 UGT78D1, UDP-glucosyl transferase 78D1 0.450 -0.158
67 267010_at AT2G39250 SNZ, SCHNARCHZAPFEN 0.450 -0.862
68 256060_at AT1G07050 [CCT motif family protein] 0.447 0.357
69 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] 0.444 0.314
70 259272_at AT3G01290 AtHIR2, HIR2, hypersensitive induced reaction 2 0.444 0.751
71 246997_at AT5G67390 unknown 0.443 0.034
72 252470_at AT3G46930 [Protein kinase superfamily protein] 0.443 0.451
73 255786_at AT1G19670 ATCLH1, chlorophyllase 1, ATHCOR1, CORONATINE-INDUCED PROTEIN 1, CLH1, chlorophyllase 1, CORI1, CORONATINE-INDUCED PROTEIN 1 0.442 -0.529
74 255923_at AT1G22180 [Sec14p-like phosphatidylinositol transfer family protein] 0.439 -0.276
75 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 0.438 -0.034
76 256383_at AT1G66820 [glycine-rich protein] 0.437 1.228
77 264583_at AT1G05170 [Galactosyltransferase family protein] 0.436 -0.122
78 253657_at AT4G30110 ATHMA2, ARABIDOPSIS HEAVY METAL ATPASE 2, HMA2, heavy metal atpase 2 0.431 -0.924
79 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.430 -0.483
80 248961_at AT5G45650 [subtilase family protein] 0.430 0.244
81 259899_at AT1G71210 [Pentatricopeptide repeat (PPR) superfamily protein] 0.429 -1.195
82 253884_at AT4G27670 HSP21, heat shock protein 21 -0.901 0.112
83 258695_at AT3G09640 APX1B, ASCORBATE PEROXIDASE 1B, APX2, ascorbate peroxidase 2 -0.788 -0.308
84 260770_at AT1G49200 [RING/U-box superfamily protein] -0.740 -1.038
85 248509_at AT5G50335 unknown -0.711 -0.445
86 251791_at AT3G55500 ATEXP16, ATEXPA16, expansin A16, ATHEXP ALPHA 1.7, EXP16, EXPANSIN 16, EXPA16, expansin A16 -0.699 -0.070
87 250624_at AT5G07330 unknown -0.675 0.028
88 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 -0.663 -0.040
89 249454_at AT5G39520 unknown -0.655 -0.237
90 250155_at AT5G15160 BHLH134, BASIC HELIX-LOOP-HELIX PROTEIN 134, BNQ2, BANQUO 2 -0.608 -0.077
91 254635_at AT4G18670 [Leucine-rich repeat (LRR) family protein] -0.600 0.345
92 260515_at AT1G51460 ABCG13, ATP-binding cassette G13 -0.600 0.530
93 245171_at AT2G47560 [RING/U-box superfamily protein] -0.595 -0.508
94 255050_at AT4G09700 unknown -0.591 -0.025
95 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] -0.589 -0.077
96 256632_at AT3G28330 [F-box family protein-related] -0.576 0.492
97 254263_at AT4G23493 unknown -0.567 0.927
98 264788_at AT2G17880 DJC24, DNA J protein C24 -0.563 -0.005
99 262603_at AT1G15380 GLYI4, glyoxylase I 4 -0.553 -0.697
100 264551_at AT1G09460 [Carbohydrate-binding X8 domain superfamily protein] -0.547 -0.612
101 263019_at AT1G23870 ATTPS9, trehalose-phosphatase/synthase 9, TPS9, TREHALOSE -6-PHOSPHATASE SYNTHASE S9, TPS9, trehalose-phosphatase/synthase 9 -0.543 0.597
102 246565_at AT5G15530 BCCP2, biotin carboxyl carrier protein 2, CAC1-B -0.543 1.173
103 262764_at AT1G13140 CYP86C3, cytochrome P450, family 86, subfamily C, polypeptide 3 -0.542 0.299
104 256933_at AT3G22600 LTPG5, glycosylphosphatidylinositol-anchored lipid protein transfer 5 -0.540 0.677
105 263543_at AT2G21610 ATPE11, A. THALIANA PECTINESTERASE 11, PE11, pectinesterase 11 -0.539 0.648
106 254336_at AT4G22050 [Eukaryotic aspartyl protease family protein] -0.533 0.115
107 263979_at AT2G42840 PDF1, protodermal factor 1 -0.522 0.090
108 259167_at AT3G01570 [Oleosin family protein] -0.521 -0.738
109 256937_at AT3G22620 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.519 0.086
110 255741_at AT1G25410 ATIPT6, ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 6, IPT6, isopentenyltransferase 6 -0.513 0.558
111 264079_at AT2G28490 [RmlC-like cupins superfamily protein] -0.511 -0.037
112 247951_at AT5G57240 ORP4C, OSBP(oxysterol binding protein)-related protein 4C -0.510 0.149
113 262977_at AT1G75490 [Integrase-type DNA-binding superfamily protein] -0.509 -0.026
114 259235_at AT3G11600 unknown -0.507 -0.394
115 260437_at AT1G68380 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.505 -1.038
116 249784_at AT5G24280 GMI1, GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 -0.504 0.903
117 249415_at AT5G39660 CDF2, cycling DOF factor 2 -0.503 0.501
118 245353_at AT4G16000 unknown -0.502 -0.516
119 257985_at AT3G20810 JMJ30, Jumonji C domain-containing protein 30, JMJD5, jumonji domain containing 5 -0.500 0.754
120 260914_at AT1G02640 ATBXL2, BETA-XYLOSIDASE 2, BXL2, beta-xylosidase 2 -0.498 -0.256
121 249289_at AT5G41040 ASFT, aliphatic suberin feruloyl-transferase, HHT, hydroxycinnamoyl- CoA:ω-hydroxyacid O-hydroxycinnamoyltransferase, RWP1, REDUCED LEVELS OF WALL-BOUND PHENOLICS 1 -0.491 -0.695
122 266613_at AT2G14900 [Gibberellin-regulated family protein] -0.489 0.526
123 246459_at AT5G16900 [Leucine-rich repeat protein kinase family protein] -0.489 -0.448
124 249794_at AT5G23530 AtCXE18, carboxyesterase 18, CXE18, carboxyesterase 18 -0.484 0.426
125 266918_at AT2G45800 PLIM2a, PLIM2a -0.484 -0.783
126 247170_at AT5G65530 [Protein kinase superfamily protein] -0.479 0.430
127 260748_at AT1G49210 [RING/U-box superfamily protein] -0.478 0.190
128 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related -0.477 0.386
129 247352_at AT5G63650 SNRK2-5, SNRK2.5, SNF1-related protein kinase 2.5, SRK2H, SNF1-RELATED PROTEIN KINASE 2H -0.470 -0.290
130 252882_at AT4G39675 unknown -0.468 0.753
131 250683_x_at AT5G06640 EXT10, extensin 10 -0.462 -0.454
132 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 -0.461 -0.176
133 253066_at AT4G37770 ACS8, 1-amino-cyclopropane-1-carboxylate synthase 8 -0.459 -0.387
134 251842_at AT3G54580 [Proline-rich extensin-like family protein] -0.453 -0.088
135 265345_at AT2G22680 WAVH1, WAV3 homolog 1 -0.445 -0.577
136 262131_at AT1G02900 ATRALF1, RAPID ALKALINIZATION FACTOR 1, RALF1, rapid alkalinization factor 1, RALFL1, RALF-LIKE 1 -0.437 1.271
137 254015_at AT4G26140 BGAL12, beta-galactosidase 12 -0.436 -0.775
138 246203_at AT4G36610 [alpha/beta-Hydrolases superfamily protein] -0.424 -0.332
139 247800_at AT5G58570 unknown -0.421 0.659
140 250682_x_at AT5G06630 [proline-rich extensin-like family protein] -0.416 -0.566
141 267254_at AT2G23030 SNRK2-9, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNRK2.9, SNF1-related protein kinase 2.9 -0.414 -0.006
142 250091_at AT5G17340 [Putative membrane lipoprotein] -0.413 -0.426
143 252178_at AT3G50750 BEH1, BES1/BZR1 homolog 1 -0.412 0.218
144 257306_at AT3G30200 [Plant transposase (Ptta/En/Spm family)] -0.405 0.428
145 257517_at AT3G16330 unknown -0.404 -0.125
146 262771_at AT1G13200 [F-box and associated interaction domains-containing protein] -0.398 0.346
147 260668_at AT1G19530 unknown -0.398 -0.079
148 264775_at AT1G22880 ATCEL5, ARABIDOPSIS THALIANA CELLULASE 5, ATGH9B4, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, CEL5, cellulase 5 -0.394 -0.138
149 249234_at AT5G42200 [RING/U-box superfamily protein] -0.394 -0.423
150 251254_at AT3G62270 BOR2, REQUIRES HIGH BORON 2 -0.394 0.072
151 266211_at AT2G06820 unknown -0.391 -0.717
152 245912_at AT5G19600 SULTR3;5, sulfate transporter 3;5 -0.386 -0.085
153 260163_at AT1G79900 ATMBAC2, RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, BAC2 -0.386 -0.130
154 266783_at AT2G29130 ATLAC2, LAC2, laccase 2 -0.385 -0.865
155 250483_at AT5G10300 AtHNL, ATMES5, ARABIDOPSIS THALIANA METHYL ESTERASE 5, HNL, HYDROXYNITRILE LYASE, MES5, methyl esterase 5 -0.385 0.894
156 251843_x_at AT3G54590 ATHRGP1, hydroxyproline-rich glycoprotein, HRGP1, hydroxyproline-rich glycoprotein -0.381 0.820
157 265014_at AT1G24430 [HXXXD-type acyl-transferase family protein] -0.381 -0.332
158 263061_at AT2G18190 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.379 -0.177
159 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 -0.373 -0.400
160 266156_at AT2G28110 FRA8, FRAGILE FIBER 8, IRX7, IRREGULAR XYLEM 7 -0.372 -0.350
161 247381_at AT5G63390 [O-fucosyltransferase family protein] -0.372 -0.642
162 263998_at AT2G22510 [hydroxyproline-rich glycoprotein family protein] -0.369 0.089