4.0:Information of module
micropylar endosperm linear-cotyledon
In comparison with lec1-1 Cotyledon Stage Seed help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 5.872e-13
GO:0016070 RNA metabolic process BP 1.150e-09
GO:0006139 nucleobase-containing compound metabolic... BP 1.521e-08
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009698 phenylpropanoid metabolic process BP 8.020e-05
GO:0010817 regulation of hormone levels BP 1.132e-04
GO:0009411 response to UV BP 1.686e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
micropylar endosperm linear-cotyledon		 Log2 signal ratio
lec1-1 Cotyledon Stage Seed
1 255002_at AT4G09940 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 1.176 -1.100
2 249482_at AT5G38980 unknown 0.898 0.137
3 252988_at AT4G38410 [Dehydrin family protein] 0.855 0.297
4 253488_at AT4G31610 ATREM1, REPRODUCTIVE MERISTEM 1, REM1, REPRODUCTIVE MERISTEM 1 0.844 -0.568
5 267150_at AT2G23510 SDT, spermidine disinapoyl acyltransferase 0.843 -0.682
6 265688_at AT2G24300 [Calmodulin-binding protein] 0.817 -0.106
7 261916_at AT1G65910 anac028, NAC domain containing protein 28, NAC028, NAC domain containing protein 28 0.812 -0.764
8 256435_at AT3G11180 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.804 -0.371
9 249173_at AT5G43000 unknown 0.794 -0.287
10 258017_at AT3G19370 unknown 0.783 -0.362
11 262734_at AT1G28640 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.779 -0.919
12 258571_at AT3G04420 anac048, NAC domain containing protein 48, NAC048, NAC domain containing protein 48 0.777 -1.146
13 247928_at AT5G57320 VLN5, villin 5 0.766 -0.966
14 248922_at AT5G45980 STPL, STIMPY-LIKE, WOX8, WUSCHEL related homeobox 8, WOX9B, WUSCHEL related homeobox 9B 0.748 -1.161
15 254409_at AT4G21400 CRK28, cysteine-rich RLK (RECEPTOR-like protein kinase) 28 0.747 0.210
16 257298_at AT3G28155 unknown 0.738 -1.073
17 254974_at AT4G10490 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.735 0.340
18 267137_at AT2G23410 ACPT, cis-prenyltransferase, AtcPT3, CPT, cis-prenyltransferase, cPT3, cis-prenyltransferase 3 0.733 -1.009
19 251309_at AT3G61220 SDR1, short-chain dehydrogenase/reductase 1 0.728 0.435
20 263892_at AT2G36890 ATMYB38, MYB DOMAIN PROTEIN 38, BIT1, BLUE INSENSITIVE TRAIT 1, MYB38, MYB DOMAIN PROTEIN 38, RAX2, REGULATOR OF AXILLARY MERISTEMS 2 0.711 -0.231
21 245782_at AT1G35200 [pseudogene] 0.679 -1.497
22 257542_at AT3G26050 [TPX2 (targeting protein for Xklp2) protein family] 0.678 -0.516
23 264037_at AT2G03750 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.653 0.431
24 254781_at AT4G12840 unknown 0.649 0.368
25 261815_at AT1G08320 bZIP21, TGA9, TGACG (TGA) motif-binding protein 9 0.644 -0.050
26 253575_at AT4G31060 [Integrase-type DNA-binding superfamily protein] 0.642 0.422
27 262212_at AT1G74890 ARR15, response regulator 15 0.630 -0.773
28 265704_at AT2G03420 unknown 0.611 0.238
29 254339_at AT4G22100 BGLU3, beta glucosidase 2 0.609 -0.794
30 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 0.609 -0.193
31 267453_at AT2G33880 HB-3, homeobox-3, STIP, STIMPY, WOX9, WUSCHEL-RELATED HOMEOBOX 9, WOX9A, WUSCHEL related homeobox 9A 0.602 -0.085
32 261422_at AT1G18730 NDF6, NDH dependent flow 6, PnsB4, Photosynthetic NDH subcomplex B 4 0.599 -0.254
33 253305_at AT4G33666 unknown 0.580 -0.990
34 245645_at AT1G24764 ATMAP70-2, microtubule-associated proteins 70-2, MAP70-2, microtubule-associated proteins 70-2 0.575 -0.062
35 247467_at AT5G62130 [Per1-like family protein] 0.554 -0.296
36 261137_at AT1G19830 SAUR54, SMALL AUXIN UPREGULATED RNA 54 0.542 -0.603
37 253145_at AT4G35560 DAW1, DUO1-activated WD40 1 0.538 0.082
38 262886_at AT1G14760 KNATM, KNOX Arabidopsis thaliana meinox 0.523 0.394
39 252253_at AT3G49300 [proline-rich family protein] 0.520 0.583
40 266979_at AT2G39470 PnsL1, Photosynthetic NDH subcomplex L 1, PPL2, PsbP-like protein 2 0.519 0.641
41 248394_at AT5G52070 [Agenet domain-containing protein] 0.514 0.285
42 262553_at AT1G31360 ATRECQ2, ARABIDOPSIS THALIANA RECQ 2, MED34, RECQL2, RECQ helicase L2 0.514 -0.911
43 250663_at AT5G07110 PRA1.B6, prenylated RAB acceptor 1.B6 0.514 -0.801
44 254653_at AT4G18180 [Pectin lyase-like superfamily protein] 0.514 -0.274
45 248359_at AT5G52410 unknown 0.512 -0.796
46 259987_at AT1G75030 ATLP-3, thaumatin-like protein 3, TLP-3, thaumatin-like protein 3 0.510 -0.274
47 259086_at AT3G04990 unknown 0.509 -1.643
48 251413_at AT3G60320 unknown 0.500 1.423
49 246948_at AT5G25130 CYP71B12, cytochrome P450, family 71, subfamily B, polypeptide 12 0.496 -0.479
50 261642_at AT1G27680 APL2, ADPGLC-PPase large subunit 0.485 0.059
51 246493_at AT5G16180 ATCRS1, ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, CRS1, ortholog of maize chloroplast splicing factor CRS1 0.481 -0.010
52 248242_at AT5G53580 AtPLR1, PLR1, pyridoxal reductase 1 0.480 -0.480
53 262893_at AT1G59790 [Cullin family protein] 0.479 -0.422
54 264610_at AT1G04645 [Plant self-incompatibility protein S1 family] 0.478 0.608
55 246098_at AT5G20400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.469 -0.759
56 254785_at AT4G12730 FLA2, FASCICLIN-like arabinogalactan 2 0.460 0.138
57 254652_at AT4G18170 ATWRKY28, WRKY28, WRKY DNA-binding protein 28 0.456 -0.818
58 266520_at AT2G23980 ATCNGC6, cyclic nucleotide-gated channel 6, CNGC6, cyclic nucleotide-gated channel 6 0.450 0.999
59 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 0.445 0.184
60 254194_at AT4G23980 ARF9, auxin response factor 9 0.445 -0.634
61 259388_at AT1G13420 ATST4B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, ST4B, sulfotransferase 4B 0.442 -0.547
62 264932_at AT1G61240 unknown 0.440 -0.251
63 256926_at AT3G22540 unknown 0.437 -0.118
64 255806_at AT4G10260 [pfkB-like carbohydrate kinase family protein] 0.433 -0.036
65 250742_at AT5G05800 unknown 0.430 -0.106
66 254693_at AT4G17880 MYC4 0.430 -0.476
67 251434_at AT3G59850 [Pectin lyase-like superfamily protein] 0.428 -0.344
68 257710_at AT3G27350 unknown 0.426 0.834
69 256292_at AT1G69430 unknown 0.421 -0.758
70 247400_at AT5G62840 [Phosphoglycerate mutase family protein] 0.418 0.216
71 258087_at AT3G26060 ATPRX Q, PRXQ, peroxiredoxin Q 0.418 0.561
72 262984_at AT1G54460 [TPX2 (targeting protein for Xklp2) protein family] 0.417 0.628
73 266507_at AT2G47860 SETH6 0.417 -1.514
74 267122_at AT2G23550 ABE1, ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, ATMES6, METHYL ESTERASE 6, MES6, methyl esterase 6 -1.216 0.780
75 260655_at AT1G19320 [Pathogenesis-related thaumatin superfamily protein] -1.196 0.256
76 252138_at AT3G50990 PER36, peroxidase 36 -1.180 0.038
77 261728_at AT1G76160 sks5, SKU5 similar 5 -1.155 0.979
78 267408_at AT2G34890 [CTP synthase family protein] -1.089 -0.137
79 260124_at AT1G36340 UBC31, ubiquitin-conjugating enzyme 31 -1.079 -0.069
80 266353_at AT2G01520 MLP328, MLP-like protein 328, ZCE1, (Zusammen-CA)-enhanced 1 -1.060 0.691
81 264557_at AT1G09550 [Pectinacetylesterase family protein] -1.057 1.366
82 265161_at AT1G30900 BP80-3;3, binding protein of 80 kDa 3;3, VSR3;3, VACUOLAR SORTING RECEPTOR 3;3, VSR6, VACUOLAR SORTING RECEPTOR 6 -1.047 0.141
83 246962_s_at AT5G24800 ATBZIP9, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, BZIP9, basic leucine zipper 9, BZO2H2, BASIC LEUCINE ZIPPER O2 HOMOLOG 2 -1.043 1.184
84 247487_at AT5G62150 [peptidoglycan-binding LysM domain-containing protein] -1.013 0.677
85 248496_at AT5G50790 AtSWEET10, SWEET10 -1.011 0.561
86 256599_at AT3G14760 unknown -0.977 1.006
87 263867_at AT2G36830 GAMMA-TIP, gamma tonoplast intrinsic protein, GAMMA-TIP1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, TIP1;1, TONOPLAST INTRINSIC PROTEIN 1;1 -0.976 0.390
88 259845_at AT1G73590 ATPIN1, ARABIDOPSIS THALIANA PIN-FORMED 1, PIN1, PIN-FORMED 1 -0.948 -0.193
89 250582_at AT5G07580 [Integrase-type DNA-binding superfamily protein] -0.920 0.819
90 264346_at AT1G12010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.918 0.986
91 250471_at AT5G10170 ATMIPS3, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, MIPS3, myo-inositol-1-phosphate synthase 3 -0.908 -0.508
92 248812_at AT5G47330 [alpha/beta-Hydrolases superfamily protein] -0.900 1.335
93 251827_at AT3G55120 A11, AtCHI, CFI, CHALCONE FLAVANONE ISOMERASE, CHI, chalcone isomerase, TT5, TRANSPARENT TESTA 5 -0.887 1.534
94 253056_at AT4G37650 SGR7, SHOOT GRAVITROPISM 7, SHR, SHORT ROOT -0.873 -0.171
95 266640_at AT2G35585 unknown -0.871 0.509
96 248365_at AT5G52500 unknown -0.867 0.188
97 257644_at AT3G25780 AOC3, allene oxide cyclase 3 -0.855 0.025
98 245375_at AT4G17660 [Protein kinase superfamily protein] -0.854 0.261
99 255014_at AT4G09960 AGL11, AGAMOUS-like 11, STK, SEEDSTICK -0.849 1.636
100 263553_at AT2G16430 ATPAP10, PAP10, purple acid phosphatase 10 -0.840 0.374
101 251380_at AT3G60700 unknown -0.837 0.040
102 245138_at AT2G45190 AFO, ABNORMAL FLORAL ORGANS, FIL, FILAMENTOUS FLOWER, YAB1, YABBY1 -0.832 0.266
103 264891_at AT1G23200 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.827 0.971
104 254906_at AT4G11180 DP1, dirigent protein 1 -0.816 1.315
105 249479_at AT5G38960 [RmlC-like cupins superfamily protein] -0.813 0.185
106 245980_at AT5G13140 [Pollen Ole e 1 allergen and extensin family protein] -0.810 0.865
107 253812_at AT4G28240 [Wound-responsive family protein] -0.806 0.753
108 264672_at AT1G09750 [Eukaryotic aspartyl protease family protein] -0.791 -0.168
109 260490_at AT1G51500 ABCG12, ATP-binding cassette G12, AtABCG12, ATWBC12, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, CER5, ECERIFERUM 5, D3, WBC12, WHITE-BROWN COMPLEX 12 -0.790 0.682
110 264025_at AT2G21050 LAX2, like AUXIN RESISTANT 2 -0.787 -0.544
111 254430_at AT4G20820 [FAD-binding Berberine family protein] -0.787 -0.280
112 246239_at AT4G36790 [Major facilitator superfamily protein] -0.757 1.032
113 263988_at AT2G42830 AGL5, AGAMOUS-like 5, SHP2, SHATTERPROOF 2 -0.753 1.504
114 254175_at AT4G24050 [NAD(P)-binding Rossmann-fold superfamily protein] -0.748 1.186
115 256598_at AT3G30180 BR6OX2, brassinosteroid-6-oxidase 2, CYP85A2 -0.746 -0.070
116 255794_at AT2G33480 ANAC041, NAC domain containing protein 41, NAC041, NAC domain containing protein 41 -0.746 0.530
117 253053_at AT4G37470 KAI2, KARRIKIN INSENSITIVE 2 -0.745 1.308
118 255768_at AT1G16705 [p300/CBP acetyltransferase-related protein-related] -0.740 0.916
119 254307_at AT4G22400 unknown -0.727 -0.836
120 267124_at AT2G23570 ATMES19, ARABIDOPSIS THALIANA METHYL ESTERASE 19, MES19, methyl esterase 19 -0.723 -0.308
121 246550_at AT5G14920 GASA14, A-stimulated in Arabidopsis 14 -0.722 0.232
122 254397_at AT4G21690 ATGA3OX3, ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, GA3OX3, gibberellin 3-oxidase 3 -0.699 -0.432
123 254777_at AT4G12960 AtGILT, GILT, gamma-interferon-responsive lysosomal thiol reductase -0.692 1.860
124 246978_at AT5G24910 CYP714A1, cytochrome P450, family 714, subfamily A, polypeptide 1, ELA1, EUI-like p450 A1 -0.686 1.272
125 245399_at AT4G17340 DELTA-TIP2, TIP2;2, tonoplast intrinsic protein 2;2 -0.684 -0.263
126 260917_at AT1G02700 unknown -0.684 0.576
127 252050_at AT3G52550 unknown -0.681 0.579
128 249750_at AT5G24570 unknown -0.681 0.989
129 255709_at AT4G00180 YAB3, YABBY3 -0.678 0.327
130 263522_at AT2G24950 unknown -0.672 0.109
131 266358_at AT2G32280 VCC, VASCULATURE COMPLEXITY AND CONNECTIVITY -0.670 -0.309
132 250344_at AT5G11930 [Thioredoxin superfamily protein] -0.663 -0.724
133 258781_at AT3G11740 unknown -0.655 -0.468
134 248635_at AT5G49050 unknown -0.652 -0.001
135 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.652 -0.178
136 264301_at AT1G78780 [pathogenesis-related family protein] -0.646 0.358
137 253984_at AT4G26590 ATOPT5, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, OPT5, oligopeptide transporter 5 -0.644 1.049
138 261106_at AT1G62990 IXR11, KNAT7, KNOTTED-like homeobox of Arabidopsis thaliana 7 -0.643 0.428
139 265430_at AT2G20700 LLG2, LORELEI-LIKE-GPI ANCHORED PROTEIN 2 -0.639 0.523
140 245879_at AT5G09420 AtmtOM64, ATTOC64-V, translocon at the outer membrane of chloroplasts 64-V, MTOM64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, OM64, outer membrane 64, TOC64-V, translocon at the outer membrane of chloroplasts 64-V -0.638 -0.206
141 253676_at AT4G29570 [Cytidine/deoxycytidylate deaminase family protein] -0.630 0.134
142 249497_at AT5G39220 [alpha/beta-Hydrolases superfamily protein] -0.630 1.299
143 262312_at AT1G70830 MLP28, MLP-like protein 28 -0.627 0.722
144 265354_at AT2G16700 ADF5, actin depolymerizing factor 5, ATADF5 -0.626 -0.003
145 249755_at AT5G24580 [Heavy metal transport/detoxification superfamily protein ] -0.624 0.809