4.0:Information of module
embryo proper linear-cotyledon
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006139 nucleobase-containing compound metabolic... BP 6.263e-18
GO:0046483 heterocycle metabolic process BP 6.731e-17
GO:0034641 cellular nitrogen compound metabolic pro... BP 1.901e-16
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0007030 Golgi organization BP 2.129e-10
GO:0044765 single-organism transport BP 4.950e-10
GO:0006810 transport BP 5.478e-10
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
embryo proper linear-cotyledon		 Log2 signal ratio
Leafminer damaged seedlings
1 246487_at AT5G16030 unknown 0.982 -0.135
2 255149_at AT4G08150 BP, BREVIPEDICELLUS, BP1, BREVIPEDICELLUS 1, KNAT1, KNOTTED-like from Arabidopsis thaliana 0.919 -0.019
3 260230_at AT1G74500 ATBS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, bHLH135, basic helix-loop-helix protein 135, BS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, PRE3, PACLOBUTRAZOL RESISTANCE 3, TMO7, TARGET OF MONOPTEROS 7 0.916 0.035
4 249837_at AT5G23480 [SWIB/MDM2 domain] 0.874 -0.446
5 252765_at AT3G42800 unknown 0.845 -0.176
6 250108_at AT5G15150 ATHB-3, homeobox 3, ATHB3, HAT7, HOMEOBOX FROM ARABIDOPSIS THALIANA 7, HB-3, homeobox 3 0.823 0.000
7 263597_at AT2G01870 unknown 0.802 -0.242
8 257542_at AT3G26050 [TPX2 (targeting protein for Xklp2) protein family] 0.793 -0.036
9 245743_at AT1G51080 unknown 0.763 -0.327
10 267271_at AT2G02540 ATHB21, homeobox protein 21, HB21, homeobox protein 21, ZFHD4, ZINC FINGER HOMEODOMAIN 4, ZHD3, ZINC FINGER HOMEODOMAIN 3 0.763 -0.074
11 261840_at AT1G16070 AtTLP8, tubby like protein 8, TLP8, tubby like protein 8 0.742 -0.013
12 246455_at AT5G16790 AtTHO7, THO7 0.736 -0.030
13 264507_at AT1G09415 NIMIN-3, NIM1-interacting 3 0.725 0.052
14 256082_at AT1G20720 [RAD3-like DNA-binding helicase protein] 0.723 -0.023
15 247606_at AT5G61000 ATRPA70D, RPA70D 0.720 -0.170
16 245869_at AT1G26330 [DNA binding] 0.718 -0.028
17 258055_at AT3G16250 NDF4, NDH-dependent cyclic electron flow 1, PnsB3, Photosynthetic NDH subcomplex B 3 0.705 -0.296
18 262553_at AT1G31360 ATRECQ2, ARABIDOPSIS THALIANA RECQ 2, MED34, RECQL2, RECQ helicase L2 0.690 -0.060
19 251734_at AT3G56270 unknown 0.689 -0.121
20 261915_at AT1G65880 BZO1, benzoyloxyglucosinolate 1 0.672 -0.003
21 264558_at AT1G09600 [Protein kinase superfamily protein] 0.670 -0.008
22 262752_at AT1G16330 CYCB3;1, cyclin b3;1 0.666 -0.026
23 266589_at AT2G46250 [myosin heavy chain-related] 0.654 -0.486
24 266979_at AT2G39470 PnsL1, Photosynthetic NDH subcomplex L 1, PPL2, PsbP-like protein 2 0.643 -0.283
25 261807_at AT1G30515 unknown 0.642 0.021
26 249206_at AT5G42630 ATS, ABERRANT TESTA SHAPE, KAN4, KANADI 4 0.637 -0.014
27 259972_at AT1G76420 ANAC031, Arabidopsis NAC domain containing protein 31, CUC3, CUP SHAPED COTYLEDON3, NAC368 0.623 0.010
28 264698_at AT1G70200 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.623 -0.207
29 257781_at AT3G27120 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.622 -0.047
30 261277_at AT1G20230 [Pentatricopeptide repeat (PPR) superfamily protein] 0.619 -0.115
31 254728_at AT4G13690 unknown 0.618 -0.064
32 265704_at AT2G03420 unknown 0.604 -0.238
33 257172_at AT3G23700 [Nucleic acid-binding proteins superfamily] 0.602 -0.205
34 247035_at AT5G67110 ALC, ALCATRAZ 0.594 -0.023
35 261638_at AT1G49975 [INVOLVED IN: photosynthesis] 0.592 -0.241
36 249253_at AT5G42060 [DEK, chromatin associated protein] 0.592 0.064
37 252319_at AT3G48710 [DEK domain-containing chromatin associated protein] 0.586 0.017
38 253410_at AT4G32970 unknown 0.584 -0.111
39 257352_at AT2G34900 GTE01, GTE1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, IMB1, IMBIBITION-INDUCIBLE 1 0.581 -0.010
40 258136_at AT3G24560 RSY3, RASPBERRY 3 0.578 -0.210
41 265646_at AT2G27360 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.568 -0.231
42 247187_at AT5G65490 unknown 0.565 -0.157
43 261124_at AT1G04900 unknown 0.540 0.047
44 262036_at AT1G35530 At-FANCM, FANCM, Fanconi anemia complementation group M 0.537 -0.033
45 254693_at AT4G17880 MYC4 0.536 -0.456
46 248394_at AT5G52070 [Agenet domain-containing protein] 0.532 0.012
47 261225_at AT1G20100 unknown 0.532 0.110
48 250762_at AT5G05990 [Mitochondrial glycoprotein family protein] 0.530 -0.117
49 248279_at AT5G52910 ATIM, TIMELESS 0.528 0.012
50 261086_at AT1G17460 TRFL3, TRF-like 3 0.521 -0.120
51 248315_at AT5G52630 MEF1, mitochondrial RNA editing factor 1 0.517 -0.089
52 262257_at AT1G53860 [Remorin family protein] 0.514 -0.010
53 248956_at AT5G45610 SUV2, SENSITIVE TO UV 2 0.512 -0.066
54 253498_at AT4G31890 [ARM repeat superfamily protein] 0.511 -0.303
55 258546_at AT3G07060 emb1974, embryo defective 1974 0.506 -0.034
56 266575_at AT2G24060 [Translation initiation factor 3 protein] 0.505 -0.152
57 247151_at AT5G65640 bHLH093, beta HLH protein 93 0.498 0.104
58 254964_at AT4G11080 3xHMG-box1, 3xHigh Mobility Group-box1 0.497 0.037
59 248133_at AT5G54850 unknown 0.497 0.199
60 245585_at AT4G14970 unknown 0.493 -0.048
61 249355_at AT5G40500 unknown 0.492 0.137
62 267311_at AT2G34670 unknown 0.489 -0.014
63 253574_at AT4G31030 [Putative membrane lipoprotein] 0.489 -0.204
64 262494_at AT1G21810 unknown 0.487 -0.076
65 248359_at AT5G52410 unknown 0.485 0.227
66 261510_at AT1G71760 unknown 0.482 -0.060
67 263130_at AT1G78650 POLD3 0.482 -0.024
68 252712_at AT3G43800 ATGSTU27, glutathione S-transferase tau 27, GSTU27, glutathione S-transferase tau 27 0.481 -0.446
69 267508_at AT2G45700 [sterile alpha motif (SAM) domain-containing protein] 0.479 -0.221
70 261084_at AT1G07440 [NAD(P)-binding Rossmann-fold superfamily protein] 0.475 -0.186
71 250304_at AT5G12110 [Glutathione S-transferase, C-terminal-like] 0.474 -0.525
72 257201_at AT3G23740 unknown 0.474 -0.147
73 247032_at AT5G67240 SDN3, small RNA degrading nuclease 3 0.472 -0.026
74 248253_at AT5G53290 CRF3, cytokinin response factor 3 0.467 0.718
75 263083_at AT2G27190 ATPAP1, ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, ATPAP12, PURPLE ACID PHOSPHATASE 12, PAP1, PURPLE ACID PHOSPHATASE 1, PAP12, purple acid phosphatase 12 0.462 -0.087
76 245670_at AT1G28210 ATJ1 0.462 0.068
77 251476_at AT3G59670 unknown 0.456 -0.212
78 252116_at AT3G51510 unknown 0.454 -0.043
79 261591_at AT1G01740 BSK4, brassinosteroid-signaling kinase 4 0.444 -0.117
80 257900_at AT3G28420 [Putative membrane lipoprotein] 0.444 -0.363
81 263441_at AT2G28620 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.442 -0.084
82 264969_at AT1G67320 EMB2813, EMBRYO DEFECTIVE 2813 0.441 -0.115
83 252852_at AT4G39900 unknown 0.436 -0.287
84 253703_at AT4G29910 ATORC5, EMB2798, EMBRYO DEFECTIVE 2798, ORC5, origin recognition complex protein 5 0.432 -0.121
85 260987_at AT1G53590 NTMC2T6.1, NTMC2TYPE6.1 0.428 0.005
86 263488_at AT2G31840 MRL7-L, Mesophyll-cell RNAi Library line 7-like 0.428 -0.045
87 247928_at AT5G57320 VLN5, villin 5 0.425 -0.027
88 258701_at AT3G09720 AtRH57, RH57, RNA helicase 57 0.425 -0.079
89 257710_at AT3G27350 unknown 0.425 -0.275
90 249200_at AT5G42540 AtXRN2, EXORIBONUCLEASE 2, XRN2, exoribonuclease 2 0.422 -0.134
91 263220_at AT1G30610 EMB2279, EMBRYO DEFECTIVE 2279, EMB88, EMBRYO DEFECTIVE 88 0.419 -0.118
92 252362_at AT3G48500 PDE312, PIGMENT DEFECTIVE 312, PTAC10, PLASTID TRANSCRIPTIONALLY ACTIVE 10, TAC10 0.419 -0.127
93 259038_at AT3G09210 PTAC13, plastid transcriptionally active 13 0.414 -0.087
94 247250_at AT5G64630 FAS2, FASCIATA 2, MUB3.9, NFB01, NFB1 0.408 -0.082
95 260031_at AT1G68790 CRWN3, CROWDED NUCLEI 3, LINC3, LITTLE NUCLEI3 0.407 -0.188
96 248163_at AT5G54510 DFL1, DWARF IN LIGHT 1, GH3.6, Gretchen Hagen3.6 0.403 0.635
97 258204_at AT3G13960 AtGRF5, growth-regulating factor 5, GRF5, growth-regulating factor 5 0.402 0.045
98 252573_at AT3G45260 [C2H2-like zinc finger protein] 0.402 -0.001
99 249641_at AT5G36950 DEG10, degradation of periplasmic proteins 10, DegP10, DegP protease 10 0.401 -0.136
100 256885_at AT3G15120 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.401 -0.062
101 246095_at AT5G19310 CHR23, chromatin remodeling 23 0.400 -0.238
102 259708_at AT1G77420 [alpha/beta-Hydrolases superfamily protein] 0.400 0.398
103 252239_at AT3G49990 unknown 0.397 -0.022
104 259583_at AT1G28070 unknown 0.396 0.178
105 259449_at AT1G13800 FAC19, embryonic factor 19 0.396 -0.040
106 254777_at AT4G12960 AtGILT, GILT, gamma-interferon-responsive lysosomal thiol reductase -1.741 -0.031
107 247657_at AT5G59845 [Gibberellin-regulated family protein] -1.639 -0.062
108 247718_at AT5G59310 LTP4, lipid transfer protein 4 -1.552 0.287
109 254906_at AT4G11180 DP1, dirigent protein 1 -1.416 -0.019
110 264590_at AT2G17710 unknown -1.407 -0.084
111 258751_at AT3G05890 RCI2B, RARE-COLD-INDUCIBLE 2B -1.376 0.078
112 267125_at AT2G23580 ABE4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, ATMES4, ARABIDOPSIS THALIANA METHYL ESTERASE 4, MES4, methyl esterase 4 -1.372 -0.017
113 252092_at AT3G51420 ATSSL4, STRICTOSIDINE SYNTHASE-LIKE 4, SSL4, strictosidine synthase-like 4 -1.367 -0.209
114 266169_at AT2G38900 [Serine protease inhibitor, potato inhibitor I-type family protein] -1.365 -0.006
115 267122_at AT2G23550 ABE1, ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, ATMES6, METHYL ESTERASE 6, MES6, methyl esterase 6 -1.359 -0.010
116 264565_at AT1G05280 unknown -1.266 0.089
117 248154_at AT5G54400 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -1.263 0.026
118 248735_at AT5G48100 ATLAC15, AtTT10, LAC15, LACCASE-LIKE 15, TT10, TRANSPARENT TESTA 10 -1.262 -0.044
119 247487_at AT5G62150 [peptidoglycan-binding LysM domain-containing protein] -1.261 0.629
120 260655_at AT1G19320 [Pathogenesis-related thaumatin superfamily protein] -1.258 0.161
121 245371_at AT4G15750 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -1.253 -0.040
122 248593_at AT5G49180 [Plant invertase/pectin methylesterase inhibitor superfamily] -1.249 0.034
123 266743_at AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 -1.232 0.894
124 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 -1.228 0.788
125 250157_at AT5G15180 [Peroxidase superfamily protein] -1.222 0.034
126 266736_at AT2G46960 CYP709B1, cytochrome P450, family 709, subfamily B, polypeptide 1 -1.206 -0.061
127 262902_x_at AT1G59930 [MADS-box family protein] -1.200 -0.132
128 264577_at AT1G05260 RCI3, RARE COLD INDUCIBLE GENE 3, RCI3A -1.182 -0.015
129 262882_at AT1G64900 CYP89, CYP89A2, cytochrome P450, family 89, subfamily A, polypeptide 2 -1.171 0.071
130 256599_at AT3G14760 unknown -1.170 -0.230
131 252138_at AT3G50990 PER36, peroxidase 36 -1.168 -0.003
132 249491_at AT5G39130 [RmlC-like cupins superfamily protein] -1.158 -0.026
133 261150_at AT1G19640 JMT, jasmonic acid carboxyl methyltransferase -1.156 0.529
134 259567_at AT1G20500 [AMP-dependent synthetase and ligase family protein] -1.155 0.006
135 250614_at AT5G07260 [START (StAR-related lipid-transfer) lipid-binding domain] -1.153 -0.010
136 245892_at AT5G09370 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -1.147 -0.037
137 251962_at AT3G53420 AtPIP2;1, PIP2, PLASMA MEMBRANE INTRINSIC PROTEIN 2, PIP2;1, PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, PIP2A, plasma membrane intrinsic protein 2A -1.141 0.002
138 256524_at AT1G66200 ATGSR2, glutamine synthase clone F11, GLN1;2, glutamine synthetase 1;2, GSR2, glutamine synthase clone F11 -1.127 -0.107
139 247610_at AT5G60630 unknown -1.127 0.276
140 263649_at AT1G04380 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -1.096 -0.010
141 247666_at AT5G60140 [AP2/B3-like transcriptional factor family protein] -1.095 0.013
142 264891_at AT1G23200 [Plant invertase/pectin methylesterase inhibitor superfamily] -1.090 0.380
143 245803_at AT1G47128 RD21, responsive to dehydration 21, RD21A, responsive to dehydration 21A -1.090 -0.044
144 265615_at AT2G25450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -1.089 0.196
145 249402_at AT5G40155 [Defensin-like (DEFL) family protein] -1.077 0.011
146 264610_at AT1G04645 [Plant self-incompatibility protein S1 family] -1.059 0.009
147 252234_at AT3G49780 ATPSK3 (FORMER SYMBOL), ATPSK4, phytosulfokine 4 precursor, PSK4, phytosulfokine 4 precursor -1.058 0.627
148 259124_at AT3G02310 AGL4, AGAMOUS-like 4, SEP2, SEPALLATA 2 -1.057 0.063
149 260156_at AT1G52880 ANAC018, Arabidopsis NAC domain containing protein 18, ATNAM, NAM, NO APICAL MERISTEM, NARS2, NAC-REGULATED SEED MORPHOLOGY 2 -1.050 0.144
150 257670_at AT3G20340 unknown -1.047 0.311
151 261023_at AT1G12200 FMO, flavin monooxygenase -1.043 -0.135
152 260840_at AT1G29050 TBL38, TRICHOME BIREFRINGENCE-LIKE 38 -1.040 0.038
153 261728_at AT1G76160 sks5, SKU5 similar 5 -1.034 0.060
154 249215_at AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 -1.030 0.224
155 259268_at AT3G01070 AtENODL16, ENODL16, early nodulin-like protein 16 -1.026 -0.020
156 264401_at AT1G61720 BAN, BANYULS -1.023 0.085
157 258091_at AT3G14560 unknown -1.023 0.432
158 255756_at AT1G19940 AtGH9B5, glycosyl hydrolase 9B5, GH9B5, glycosyl hydrolase 9B5 -1.018 -0.125
159 264557_at AT1G09550 [Pectinacetylesterase family protein] -1.013 -0.031
160 265350_at AT2G22620 [Rhamnogalacturonate lyase family protein] -1.013 -0.120
161 247827_at AT5G58500 LSH5, LIGHT SENSITIVE HYPOCOTYLS 5 -1.003 -0.051
162 263988_at AT2G42830 AGL5, AGAMOUS-like 5, SHP2, SHATTERPROOF 2 -0.999 -0.088
163 262745_at AT1G28600 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.999 0.042
164 247717_at AT5G59320 LTP3, lipid transfer protein 3 -0.996 0.726
165 250473_at AT5G10220 ANN6, annexin 6, ANNAT6, ANNEXIN ARABIDOPSIS THALIANA 6 -0.985 0.023
166 251380_at AT3G60700 unknown -0.973 -0.060
167 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] -0.972 -0.058
168 266353_at AT2G01520 MLP328, MLP-like protein 328, ZCE1, (Zusammen-CA)-enhanced 1 -0.970 -0.036
169 267408_at AT2G34890 [CTP synthase family protein] -0.968 -0.048
170 253666_at AT4G30270 MERI-5, MERISTEM 5, MERI5B, meristem-5, SEN4, SENESCENCE 4, XTH24, xyloglucan endotransglucosylase/hydrolase 24 -0.967 0.127
171 261075_at AT1G07280 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.955 -0.106
172 254201_at AT4G24130 unknown -0.940 0.154
173 251188_at AT3G62730 unknown -0.939 0.051
174 266640_at AT2G35585 unknown -0.935 -0.063
175 248496_at AT5G50790 AtSWEET10, SWEET10 -0.934 0.036
176 261181_at AT1G34580 [Major facilitator superfamily protein] -0.930 -0.004
177 245483_at AT4G16190 [Papain family cysteine protease] -0.925 0.098
178 255768_at AT1G16705 [p300/CBP acetyltransferase-related protein-related] -0.924 0.008
179 248236_at AT5G53870 AtENODL1, ENODL1, early nodulin-like protein 1 -0.924 -0.036
180 256569_at AT3G19550 unknown -0.919 0.577
181 260490_at AT1G51500 ABCG12, ATP-binding cassette G12, AtABCG12, ATWBC12, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, CER5, ECERIFERUM 5, D3, WBC12, WHITE-BROWN COMPLEX 12 -0.919 -0.094
182 248365_at AT5G52500 unknown -0.918 -0.003
183 246978_at AT5G24910 CYP714A1, cytochrome P450, family 714, subfamily A, polypeptide 1, ELA1, EUI-like p450 A1 -0.918 0.184
184 260124_at AT1G36340 UBC31, ubiquitin-conjugating enzyme 31 -0.916 -0.008
185 250435_at AT5G10380 ATRING1, RING1 -0.914 0.063
186 256780_at AT3G13640 ABCE1, ATP-binding cassette E1, ATRLI1, RNAse l inhibitor protein 1, RLI1, RNAse l inhibitor protein 1 -0.912 -0.018
187 252563_at AT3G45970 ATEXLA1, expansin-like A1, ATEXPL1, ATHEXP BETA 2.1, EXLA1, expansin-like A1, EXPL1, EXPANSIN L1 -0.905 0.345
188 253277_at AT4G34230 ATCAD5, cinnamyl alcohol dehydrogenase 5, CAD-5, cinnamyl alcohol dehydrogenase 5, CAD5, cinnamyl alcohol dehydrogenase 5 -0.901 0.346
189 249800_at AT5G23660 AtSWEET12, MTN3, homolog of Medicago truncatula MTN3, SWEET12 -0.895 0.223
190 251555_at AT3G58780 AGL1, AGAMOUS-like 1, SHP1, SHATTERPROOF 1 -0.890 -0.060
191 266275_at AT2G29370 [NAD(P)-binding Rossmann-fold superfamily protein] -0.888 0.011
192 257401_at AT1G23550 SRO2, similar to RCD one 2 -0.887 -0.047
193 250474_at AT5G10230 ANN7, ANNEXIN 7, ANNAT7, annexin 7 -0.885 0.009
194 259441_at AT1G02300 [Cysteine proteinases superfamily protein] -0.884 0.091
195 254791_at AT4G12910 scpl20, serine carboxypeptidase-like 20 -0.879 0.009
196 248405_at AT5G51480 SKS2, SKU5 similar 2 -0.876 0.113
197 245375_at AT4G17660 [Protein kinase superfamily protein] -0.873 0.076
198 250416_at AT5G11220 unknown -0.870 -0.009
199 253052_at AT4G37310 CYP81H1, cytochrome P450, family 81, subfamily H, polypeptide 1 -0.866 -0.044
200 255056_at AT4G09820 AtTT8, BHLH42, TT8, TRANSPARENT TESTA 8 -0.862 0.010
201 265987_at AT2G24240 [BTB/POZ domain with WD40/YVTN repeat-like protein] -0.861 0.476
202 257824_at AT3G25290 [Auxin-responsive family protein] -0.854 0.050
203 248750_at AT5G47530 [Auxin-responsive family protein] -0.854 -0.031
204 253985_at AT4G26220 CCoAOMT7, caffeoyl coenzyme A ester O-methyltransferase 7 -0.853 -0.087
205 257644_at AT3G25780 AOC3, allene oxide cyclase 3 -0.853 1.160
206 265605_at AT2G25540 CESA10, cellulose synthase 10 -0.849 0.001
207 265020_at AT1G24540 CYP86C1, cytochrome P450, family 86, subfamily C, polypeptide 1 -0.846 -0.021
208 266444_at AT2G43150 [Proline-rich extensin-like family protein] -0.840 -0.012
209 259854_at AT1G72200 [RING/U-box superfamily protein] -0.836 -0.087