4.0:Information of module
cellularized endosperm linear-cotyledon
In comparison with bri1-116 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1902589 single-organism organelle organization BP 7.029e-09
GO:0007049 cell cycle BP 2.695e-07
GO:0006996 organelle organization BP 4.112e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006833 water transport BP 1.565e-06
GO:0042044 fluid transport BP 1.565e-06
GO:0009812 flavonoid metabolic process BP 4.113e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
cellularized endosperm linear-cotyledon		 Log2 signal ratio
bri1-116
1 267198_at AT2G30810 [Gibberellin-regulated family protein] 0.953 0.038
2 258325_at AT3G22830 AT-HSFA6B, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, HSFA6B, heat shock transcription factor A6B 0.930 0.031
3 263120_at AT1G78490 CYP708A3, cytochrome P450, family 708, subfamily A, polypeptide 3 0.842 0.024
4 253937_at AT4G26890 MAPKKK16, mitogen-activated protein kinase kinase kinase 16 0.821 -0.078
5 251857_at AT3G54770 ARP1, ABA-regulated RNA-binding protein 1 0.812 -0.362
6 262830_at AT1G14700 ATPAP3, PAP3, purple acid phosphatase 3 0.808 0.049
7 264143_at AT1G79330 AMC6, ATMC5, metacaspase 5, ATMCP2b, metacaspase 2b, MC5, metacaspase 5, MCP2b, metacaspase 2b 0.808 -0.046
8 264843_at AT1G03400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.800 -0.093
9 254003_at AT4G26290 unknown 0.779 0.023
10 264361_at AT1G03300 unknown 0.768 0.093
11 258571_at AT3G04420 anac048, NAC domain containing protein 48, NAC048, NAC domain containing protein 48 0.767 0.090
12 266387_at AT2G32360 [Ubiquitin-like superfamily protein] 0.757 0.122
13 257663_at AT3G20260 [FUNCTIONS IN: structural constituent of ribosome] 0.756 0.111
14 256435_at AT3G11180 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.750 -0.055
15 262396_at AT1G49470 unknown 0.748 0.084
16 248553_at AT5G50170 [C2 calcium/lipid-binding and GRAM domain containing protein] 0.710 -0.057
17 264507_at AT1G09415 NIMIN-3, NIM1-interacting 3 0.701 0.097
18 256292_at AT1G69430 unknown 0.687 0.061
19 260541_at AT2G43530 [Scorpion toxin-like knottin superfamily protein] 0.666 0.362
20 251822_at AT3G55060 unknown 0.665 0.060
21 262752_at AT1G16330 CYCB3;1, cyclin b3;1 0.663 0.013
22 258442_at AT3G01015 [TPX2 (targeting protein for Xklp2) protein family] 0.660 0.111
23 254974_at AT4G10490 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.659 0.112
24 247606_at AT5G61000 ATRPA70D, RPA70D 0.652 -0.096
25 264209_at AT1G22740 ATRABG3B, RAB7, RAB75, RABG3B, RAB GTPase homolog G3B 0.645 -0.152
26 251992_at AT3G53350 MIDD1, Microtubule Depletion Domain 1, RIP3, ROP interactive partner 3, RIP4, ROP interactive partner 4 0.639 0.042
27 263479_x_at AT2G04000 unknown 0.637 -0.038
28 267521_at AT2G30480 unknown 0.623 0.111
29 262036_at AT1G35530 At-FANCM, FANCM, Fanconi anemia complementation group M 0.621 0.084
30 258130_at AT3G24510 [Defensin-like (DEFL) family protein] 0.620 -0.031
31 261642_at AT1G27680 APL2, ADPGLC-PPase large subunit 0.619 0.152
32 257542_at AT3G26050 [TPX2 (targeting protein for Xklp2) protein family] 0.609 -0.015
33 251113_at AT5G01370 ACI1, ALC-interacting protein 1, TRM29, TON1 Recruiting Motif 29 0.600 -0.083
34 245192_at AT1G67780 [Zinc-finger domain of monoamine-oxidase A repressor R1 protein] 0.598 0.013
35 248471_at AT5G50840 unknown 0.597 0.069
36 260471_at AT1G11070 unknown 0.590 0.059
37 263130_at AT1G78650 POLD3 0.587 0.070
38 263115_at AT1G03055 AtD27, A. thaliana homolog of rice D27, D27, DWARF27 0.585 0.066
39 248359_at AT5G52410 unknown 0.582 0.064
40 254720_at AT4G13610 MEE57, maternal effect embryo arrest 57 0.580 0.025
41 253347_at AT4G33610 [glycine-rich protein] 0.576 0.120
42 252477_at AT3G46680 [UDP-Glycosyltransferase superfamily protein] 0.568 0.017
43 259580_at AT1G28030 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.555 0.081
44 266555_at AT2G46270 GBF3, G-box binding factor 3 0.552 -0.075
45 248133_at AT5G54850 unknown 0.544 0.012
46 256146_at AT1G48760 delta-ADR, delta-adaptin, PAT4, PROTEIN-AFFECTED TRAFFICKING 4 0.538 -0.020
47 248956_at AT5G45610 SUV2, SENSITIVE TO UV 2 0.538 0.080
48 264138_at AT1G78950 AtBAS, AtLUP4, BAS, beta-amyrin synthase 0.531 0.073
49 259794_at AT1G64330 [myosin heavy chain-related] 0.528 -0.089
50 253145_at AT4G35560 DAW1, DUO1-activated WD40 1 0.527 -0.040
51 248279_at AT5G52910 ATIM, TIMELESS 0.526 0.032
52 248379_at AT5G51700 ATRAR1, PBS2, PPHB SUSCEPTIBLE 2, RAR1, Required for Mla12 resistance 1, RPR2 0.523 0.016
53 261510_at AT1G71760 unknown 0.516 0.044
54 245925_at AT5G28770 AtbZIP63, Arabidopsis thaliana basic leucine zipper 63, BZO2H3 0.502 0.182
55 253034_at AT4G38230 ATCPK26, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, CPK26, calcium-dependent protein kinase 26 0.500 -0.027
56 254463_at AT4G20280 TAF11, TBP-associated factor 11 0.498 0.090
57 253978_at AT4G26660 unknown 0.489 0.066
58 252285_at AT3G49050 [alpha/beta-Hydrolases superfamily protein] 0.488 -0.010
59 258504_at AT3G02590 [Fatty acid hydroxylase superfamily protein] 0.487 -0.019
60 256040_at AT1G07270 [Cell division control, Cdc6] 0.485 -0.044
61 250473_at AT5G10220 ANN6, annexin 6, ANNAT6, ANNEXIN ARABIDOPSIS THALIANA 6 0.484 0.009
62 250024_at AT5G18270 ANAC087, Arabidopsis NAC domain containing protein 87 0.483 -0.452
63 261840_at AT1G16070 AtTLP8, tubby like protein 8, TLP8, tubby like protein 8 0.478 0.029
64 266562_at AT2G23970 [Class I glutamine amidotransferase-like superfamily protein] 0.476 0.002
65 248252_at AT5G53250 AGP22, arabinogalactan protein 22, ATAGP22, ARABINOGALACTAN PROTEIN 22 0.475 -0.507
66 247187_at AT5G65490 unknown 0.475 0.014
67 258183_at AT3G21550 AtDMP2, Arabidopsis thaliana DUF679 domain membrane protein 2, DMP2, DUF679 domain membrane protein 2 0.473 -0.097
68 248168_at AT5G54570 BGLU41, beta glucosidase 41 0.469 0.134
69 248955_at AT5G45600 GAS41, GLIOMAS 41, TAF14B, TBP-ASSOCIATED FACTOR 14B, YAF9a, homolog of yeast YAF9 a 0.469 -0.016
70 260987_at AT1G53590 NTMC2T6.1, NTMC2TYPE6.1 0.465 -0.029
71 252543_at AT3G45780 JK224, NPH1, NONPHOTOTROPIC HYPOCOTYL 1, PHOT1, phototropin 1, RPT1, ROOT PHOTOTROPISM 1 0.465 0.025
72 266639_at AT2G35520 DAD2, DEFENDER AGAINST CELL DEATH 2 0.456 0.041
73 257100_at AT3G25010 AtRLP41, receptor like protein 41, RLP41, receptor like protein 41 0.455 0.090
74 253089_at AT4G36290 AtMORC1, CRT1, compromised recognition of TCV 1, MORC1, Microchidia 1 0.453 0.071
75 267135_at AT2G23430 ICK1, KRP1, KIP-RELATED PROTEIN 1 0.449 0.050
76 267218_at AT2G02515 unknown 0.448 0.010
77 248432_at AT5G51390 unknown 0.448 0.033
78 246261_at AT1G31810 AFH14, Formin Homology 14 0.445 -0.027
79 251952_at AT3G53650 [Histone superfamily protein] 0.445 -0.089
80 266756_at AT2G46950 CYP709B2, cytochrome P450, family 709, subfamily B, polypeptide 2 0.442 0.016
81 251309_at AT3G61220 SDR1, short-chain dehydrogenase/reductase 1 0.438 0.153
82 247339_at AT5G63690 [Nucleic acid-binding, OB-fold-like protein] 0.438 0.367
83 246802_at AT5G27000 ATK4, kinesin 4, KATD, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D 0.437 -0.042
84 260758_at AT1G48930 AtGH9C1, glycosyl hydrolase 9C1, GH9C1, glycosyl hydrolase 9C1 0.434 -0.039
85 257128_at AT3G20080 CYP705A15, cytochrome P450, family 705, subfamily A, polypeptide 15 0.430 0.024
86 264248_at AT1G78700 BEH4, BES1/BZR1 homolog 4 0.427 -0.001
87 247717_at AT5G59320 LTP3, lipid transfer protein 3 -1.411 0.099
88 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 -1.223 0.122
89 260840_at AT1G29050 TBL38, TRICHOME BIREFRINGENCE-LIKE 38 -1.207 -0.285
90 267122_at AT2G23550 ABE1, ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, ATMES6, METHYL ESTERASE 6, MES6, methyl esterase 6 -1.201 -0.055
91 250157_at AT5G15180 [Peroxidase superfamily protein] -1.185 -0.121
92 253172_at AT4G35060 HIPP25, heavy metal associated isoprenylated plant protein 25 -1.152 -0.350
93 261728_at AT1G76160 sks5, SKU5 similar 5 -1.136 -0.123
94 266353_at AT2G01520 MLP328, MLP-like protein 328, ZCE1, (Zusammen-CA)-enhanced 1 -1.113 -0.287
95 264557_at AT1G09550 [Pectinacetylesterase family protein] -1.107 0.008
96 250517_at AT5G08260 scpl35, serine carboxypeptidase-like 35 -1.095 0.198
97 256599_at AT3G14760 unknown -1.084 0.206
98 247954_at AT5G56870 BGAL4, beta-galactosidase 4 -1.080 -0.079
99 245302_at AT4G17695 KAN3, KANADI 3 -1.073 -0.133
100 248812_at AT5G47330 [alpha/beta-Hydrolases superfamily protein] -1.047 -0.020
101 258091_at AT3G14560 unknown -1.014 -0.038
102 247827_at AT5G58500 LSH5, LIGHT SENSITIVE HYPOCOTYLS 5 -1.013 -0.151
103 261106_at AT1G62990 IXR11, KNAT7, KNOTTED-like homeobox of Arabidopsis thaliana 7 -1.012 -0.456
104 252138_at AT3G50990 PER36, peroxidase 36 -1.009 0.047
105 255756_at AT1G19940 AtGH9B5, glycosyl hydrolase 9B5, GH9B5, glycosyl hydrolase 9B5 -1.006 -0.130
106 258299_at AT3G23410 ATFAO3, ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, FAO3, fatty alcohol oxidase 3 -0.996 0.350
107 259124_at AT3G02310 AGL4, AGAMOUS-like 4, SEP2, SEPALLATA 2 -0.989 0.006
108 245436_at AT4G16620 UMAMIT8, Usually multiple acids move in and out Transporters 8 -0.983 -0.063
109 255014_at AT4G09960 AGL11, AGAMOUS-like 11, STK, SEEDSTICK -0.957 0.075
110 264891_at AT1G23200 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.946 0.098
111 248368_at AT5G51950 [Glucose-methanol-choline (GMC) oxidoreductase family protein] -0.922 0.042
112 250070_at AT5G17980 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.919 -0.203
113 259403_at AT1G17745 PGDH, 3-phosphoglycerate dehydrogenase, PGDH2, phosphoglycerate dehydrogenase 2 -0.913 -0.273
114 258470_at AT3G06035 [Glycoprotein membrane precursor GPI-anchored] -0.900 -0.168
115 250752_at AT5G05690 CBB3, CABBAGE 3, CPD, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CYP90, CYP90A, CYP90A1, CYTOCHROME P450 90A1, DWF3, DWARF 3 -0.892 0.177
116 263867_at AT2G36830 GAMMA-TIP, gamma tonoplast intrinsic protein, GAMMA-TIP1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, TIP1;1, TONOPLAST INTRINSIC PROTEIN 1;1 -0.882 -0.106
117 249491_at AT5G39130 [RmlC-like cupins superfamily protein] -0.881 0.013
118 247214_at AT5G64850 unknown -0.872 -0.224
119 246516_at AT5G15740 [O-fucosyltransferase family protein] -0.863 0.105
120 248830_at AT5G47150 [YDG/SRA domain-containing protein] -0.860 0.020
121 256569_at AT3G19550 unknown -0.852 0.058
122 262947_at AT1G75750 GASA1, GAST1 protein homolog 1 -0.849 0.068
123 247800_at AT5G58570 unknown -0.844 0.577
124 260156_at AT1G52880 ANAC018, Arabidopsis NAC domain containing protein 18, ATNAM, NAM, NO APICAL MERISTEM, NARS2, NAC-REGULATED SEED MORPHOLOGY 2 -0.836 -0.110
125 254490_at AT4G20320 [CTP synthase family protein] -0.835 -0.263
126 253056_at AT4G37650 SGR7, SHOOT GRAVITROPISM 7, SHR, SHORT ROOT -0.830 0.060
127 261813_at AT1G08280 [Glycosyltransferase family 29 (sialyltransferase) family protein] -0.817 -0.159
128 246990_at AT5G67360 ARA12 -0.815 0.012
129 255768_at AT1G16705 [p300/CBP acetyltransferase-related protein-related] -0.813 -0.043
130 260490_at AT1G51500 ABCG12, ATP-binding cassette G12, AtABCG12, ATWBC12, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, CER5, ECERIFERUM 5, D3, WBC12, WHITE-BROWN COMPLEX 12 -0.807 -0.065
131 262414_at AT1G49430 LACS2, long-chain acyl-CoA synthetase 2, LRD2, LATERAL ROOT DEVELOPMENT 2 -0.803 0.009
132 266444_at AT2G43150 [Proline-rich extensin-like family protein] -0.802 0.098
133 250337_at AT5G11790 NDL2, N-MYC downregulated-like 2 -0.799 -0.108
134 254077_at AT4G25640 ATDTX35, detoxifying efflux carrier 35, DTX35, detoxifying efflux carrier 35, FFT, FLOWER FLAVONOID TRANSPORTER -0.796 -0.042
135 266640_at AT2G35585 unknown -0.790 -0.283
136 253053_at AT4G37470 KAI2, KARRIKIN INSENSITIVE 2 -0.780 0.042
137 249800_at AT5G23660 AtSWEET12, MTN3, homolog of Medicago truncatula MTN3, SWEET12 -0.780 -0.016
138 250435_at AT5G10380 ATRING1, RING1 -0.777 0.186
139 249309_at AT5G41410 BEL1, BELL 1 -0.776 -0.126
140 267525_at AT2G30560 [glycine-rich protein] -0.770 0.075
141 245980_at AT5G13140 [Pollen Ole e 1 allergen and extensin family protein] -0.769 0.193
142 246041_at AT5G19290 [alpha/beta-Hydrolases superfamily protein] -0.768 -0.026
143 249479_at AT5G38960 [RmlC-like cupins superfamily protein] -0.766 0.144
144 253052_at AT4G37310 CYP81H1, cytochrome P450, family 81, subfamily H, polypeptide 1 -0.762 0.164
145 264025_at AT2G21050 LAX2, like AUXIN RESISTANT 2 -0.761 -0.044
146 263680_at AT1G26930 [Galactose oxidase/kelch repeat superfamily protein] -0.761 0.127
147 253812_at AT4G28240 [Wound-responsive family protein] -0.751 0.080
148 261921_at AT1G65900 unknown -0.750 -0.036
149 249346_at AT5G40780 LHT1, lysine histidine transporter 1 -0.748 0.011
150 252363_at AT3G48460 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.747 -0.224
151 262539_at AT1G17200 [Uncharacterised protein family (UPF0497)] -0.746 0.067
152 256865_at AT3G23820 GAE6, UDP-D-glucuronate 4-epimerase 6 -0.743 -0.023
153 250891_at AT5G04530 KCS19, 3-ketoacyl-CoA synthase 19 -0.735 0.060
154 266805_at AT2G30010 TBL45, TRICHOME BIREFRINGENCE-LIKE 45 -0.731 -0.097
155 267124_at AT2G23570 ATMES19, ARABIDOPSIS THALIANA METHYL ESTERASE 19, MES19, methyl esterase 19 -0.727 0.046
156 261181_at AT1G34580 [Major facilitator superfamily protein] -0.720 0.227
157 250690_at AT5G06530 ABCG22, ATP-binding cassette G22, AtABCG22, Arabidopsis thaliana ATP-binding cassette G22 -0.719 0.002
158 249750_at AT5G24570 unknown -0.717 0.030
159 256237_at AT3G12610 DRT100, DNA-DAMAGE REPAIR/TOLERATION 100 -0.709 -0.086
160 252050_at AT3G52550 unknown -0.708 0.034
161 250261_at AT5G13400 [Major facilitator superfamily protein] -0.704 -0.127
162 245375_at AT4G17660 [Protein kinase superfamily protein] -0.685 0.052
163 267093_at AT2G38170 ATCAX1, CAX1, cation exchanger 1, RCI4, RARE COLD INDUCIBLE 4 -0.679 0.148
164 261004_at AT1G26450 [Carbohydrate-binding X8 domain superfamily protein] -0.674 0.017
165 252711_at AT3G43720 LTPG2, glycosylphosphatidylinositol-anchored lipid protein transfer 2 -0.667 -0.224
166 260077_at AT1G73620 [Pathogenesis-related thaumatin superfamily protein] -0.660 0.454
167 250920_at AT5G03390 unknown -0.659 -0.029
168 260917_at AT1G02700 unknown -0.659 0.058
169 254594_at AT4G18930 [RNA ligase/cyclic nucleotide phosphodiesterase family protein] -0.658 -0.108
170 251189_at AT3G62650 unknown -0.645 0.029
171 255056_at AT4G09820 AtTT8, BHLH42, TT8, TRANSPARENT TESTA 8 -0.633 -0.036