4.0:Information of module
green tissue gl3 egl3
In comparison with bri1-116 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009636 response to toxic substance BP 9.093e-03
GO:0071368 cellular response to cytokinin stimulus BP 1.312e-02
GO:0034470 ncRNA processing BP 2.274e-02
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0016036 cellular response to phosphate starvatio... BP 3.141e-07
GO:0009267 cellular response to starvation BP 1.159e-05
GO:0042594 response to starvation BP 1.847e-05
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
green tissue gl3 egl3		 Log2 signal ratio
bri1-116
1 247406_at AT5G62920 ARR6, response regulator 6 0.620 -0.361
2 263207_at AT1G10550 XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, XTH33, xyloglucan:xyloglucosyl transferase 33 0.565 -0.034
3 267260_at AT2G23130 AGP17, arabinogalactan protein 17, ATAGP17 0.514 0.607
4 266837_x_at AT2G25990 unknown 0.513 0.068
5 250201_at AT5G14230 unknown 0.355 0.253
6 249536_at AT5G38760 [Late embryogenesis abundant protein (LEA) family protein] 0.355 0.054
7 247732_at AT5G59600 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.323 0.077
8 260265_at AT1G68510 LBD42, LOB domain-containing protein 42 0.311 0.075
9 256275_at AT3G12110 ACT11, actin-11 0.307 -0.371
10 253478_at AT4G32350 [Regulator of Vps4 activity in the MVB pathway protein] 0.303 -0.153
11 260917_at AT1G02700 unknown 0.298 0.058
12 255945_at AT5G28610 unknown 0.291 0.016
13 254813_at AT4G12350 AtMYB42, myb domain protein 42, MYB42, myb domain protein 42 0.286 0.021
14 245972_at AT5G20680 TBL16, TRICHOME BIREFRINGENCE-LIKE 16 0.283 -0.101
15 250413_at AT5G11160 APT5, adenine phosphoribosyltransferase 5 0.283 0.182
16 248404_at AT5G51460 ATTPPA, TPPA, trehalose-6-phosphate phosphatase A 0.264 0.397
17 247126_at AT5G66080 APD9, Arabidopsis Pp2c clade D 9 0.263 0.171
18 257331_at ATMG01330 ORF107H 0.262 0.018
19 253165_at AT4G35320 unknown 0.261 -0.347
20 254294_at AT4G23070 ATRBL7, RHOMBOID-like protein 7, RBL7, RHOMBOID-like protein 7 0.259 -0.168
21 245384_at AT4G16790 [hydroxyproline-rich glycoprotein family protein] 0.250 0.010
22 250164_at AT5G15280 [Pentatricopeptide repeat (PPR) superfamily protein] 0.248 0.089
23 248490_at AT5G50940 [RNA-binding KH domain-containing protein] 0.247 0.007
24 249072_at AT5G44060 unknown 0.242 -0.175
25 258576_at AT3G04230 [Ribosomal protein S5 domain 2-like superfamily protein] 0.241 -0.071
26 259444_at AT1G02370 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.234 0.064
27 247612_at AT5G60730 [Anion-transporting ATPase] 0.232 0.014
28 248204_at AT5G54280 ATM2, myosin 2, ATM4, ARABIDOPSIS THALIANA MYOSIN 4, ATMYOS1, ARABIDOPSIS THALIANA MYOSIN 1 0.230 0.041
29 265066_at AT1G03870 FLA9, FASCICLIN-like arabinoogalactan 9 0.226 -0.182
30 247068_at AT5G66800 unknown 0.222 -0.032
31 249693_at AT5G35750 AHK2, histidine kinase 2, HK2, histidine kinase 2 0.221 0.004
32 251711_at AT3G56960 PIP5K4, phosphatidyl inositol monophosphate 5 kinase 4 0.220 0.173
33 249223_at AT5G42120 LecRK-S.6, L-type lectin receptor kinase S.6 0.219 -0.030
34 266470_at AT2G31080 [non-LTR retrotransposon family (LINE), has a 1.3e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)] 0.218 0.071
35 253669_at AT4G30000 [Dihydropterin pyrophosphokinase / Dihydropteroate synthase] 0.218 0.078
36 259132_at AT3G02250 [O-fucosyltransferase family protein] 0.216 -0.025
37 255191_at AT4G07370 [gypsy-like retrotransposon family (Athila), has a 1.7e-75 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] 0.215 0.090
38 267459_at AT2G33850 unknown -0.757 0.138
39 262206_at AT2G01090 [Ubiquinol-cytochrome C reductase hinge protein] -0.602 0.145
40 260140_at AT1G66390 ATMYB90, MYB90, myb domain protein 90, PAP2, PRODUCTION OF ANTHOCYANIN PIGMENT 2 -0.457 0.116
41 263391_at AT2G11810 ATMGD3, MGD3, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MGDC, monogalactosyldiacylglycerol synthase type C -0.451 -0.215
42 258802_at AT3G04650 [FAD/NAD(P)-binding oxidoreductase family protein] -0.367 0.044
43 248479_at AT5G50910 unknown -0.342 0.064
44 255900_at AT1G17830 unknown -0.333 0.172
45 257992_at AT3G19880 [F-box and associated interaction domains-containing protein] -0.331 0.001
46 266023_at AT2G05930 [copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] -0.327 0.048
47 264783_at AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 -0.323 -0.268
48 261913_at AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 -0.311 0.081
49 248829_at AT5G47130 [Bax inhibitor-1 family protein] -0.304 0.050
50 255493_at AT4G02690 AtLFG3, LFG3, LIFEGUARD 3 -0.301 0.042
51 254069_at AT4G25434 ATNUDT10, nudix hydrolase homolog 10, NUDT10, nudix hydrolase homolog 10 -0.296 0.044
52 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 -0.291 -0.100
53 251625_at AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 -0.291 0.066
54 261736_at AT1G47810 [F-box and associated interaction domains-containing protein] -0.289 0.044
55 265214_at AT1G05000 AtPFA-DSP1, PFA-DSP1, plant and fungi atypical dual-specificity phosphatase 1 -0.285 -0.221
56 255257_at AT4G05050 UBQ11, ubiquitin 11 -0.282 -0.032
57 250408_at AT5G10930 CIPK5, CBL-interacting protein kinase 5, SnRK3.24, SNF1-RELATED PROTEIN KINASE 3.24 -0.276 -0.012
58 260256_at AT1G74350 [Intron maturase, type II family protein] -0.270 0.068
59 263401_at AT2G04070 [MATE efflux family protein] -0.264 -0.083
60 255347_at AT4G03810 [copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)] -0.263 0.041
61 254231_at AT4G23810 ATWRKY53, WRKY53 -0.252 -0.018
62 246437_at AT5G17540 [HXXXD-type acyl-transferase family protein] -0.245 0.014
63 255125_at AT4G08250 [GRAS family transcription factor] -0.243 -0.057
64 265597_at AT2G20142 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.239 -0.069
65 258856_at AT3G02040 AtGDPD1, GDPD1, Glycerophosphodiester phosphodiesterase 1, SRG3, senescence-related gene 3 -0.235 -0.139
66 257416_at AT2G17750 NIP1, NEP-interacting protein 1 -0.233 0.019
67 260945_at AT1G05950 unknown -0.229 -0.010
68 263850_at AT2G04480 unknown -0.223 0.063
69 263013_at AT1G23380 KNAT6, KNOTTED1-like homeobox gene 6, KNAT6L, KNAT6S -0.220 -0.301
70 252011_at AT3G52720 ACA1, alpha carbonic anhydrase 1, ATACA1, A. THALIANA ALPHA CARBONIC ANHYDRASE 1, CAH1, CARBONIC ANHYDRASE 1 -0.219 -0.131
71 254453_at AT4G21120 AAT1, amino acid transporter 1, CAT1, CATIONIC AMINO ACID TRANSPORTER 1 -0.210 -0.039
72 267205_at AT2G30820 unknown -0.207 0.054
73 256546_at AT3G14820 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.206 0.060