4.0:Information of module
green tissue gl3 egl3
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009636 response to toxic substance BP 9.093e-03
GO:0071368 cellular response to cytokinin stimulus BP 1.312e-02
GO:0034470 ncRNA processing BP 2.274e-02
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0016036 cellular response to phosphate starvatio... BP 3.141e-07
GO:0009267 cellular response to starvation BP 1.159e-05
GO:0042594 response to starvation BP 1.847e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
green tissue gl3 egl3		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 247406_at AT5G62920 ARR6, response regulator 6 0.620 -0.966
2 263207_at AT1G10550 XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, XTH33, xyloglucan:xyloglucosyl transferase 33 0.565 0.830
3 267260_at AT2G23130 AGP17, arabinogalactan protein 17, ATAGP17 0.514 -0.722
4 266837_x_at AT2G25990 unknown 0.513 -0.831
5 250201_at AT5G14230 unknown 0.355 0.488
6 249536_at AT5G38760 [Late embryogenesis abundant protein (LEA) family protein] 0.355 -0.951
7 247732_at AT5G59600 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.323 -1.335
8 260265_at AT1G68510 LBD42, LOB domain-containing protein 42 0.311 -0.659
9 256275_at AT3G12110 ACT11, actin-11 0.307 0.535
10 253478_at AT4G32350 [Regulator of Vps4 activity in the MVB pathway protein] 0.303 -0.681
11 260917_at AT1G02700 unknown 0.298 0.915
12 255945_at AT5G28610 unknown 0.291 -0.297
13 254813_at AT4G12350 AtMYB42, myb domain protein 42, MYB42, myb domain protein 42 0.286 -0.659
14 245972_at AT5G20680 TBL16, TRICHOME BIREFRINGENCE-LIKE 16 0.283 0.535
15 250413_at AT5G11160 APT5, adenine phosphoribosyltransferase 5 0.283 -0.090
16 248404_at AT5G51460 ATTPPA, TPPA, trehalose-6-phosphate phosphatase A 0.264 -0.277
17 247126_at AT5G66080 APD9, Arabidopsis Pp2c clade D 9 0.263 -0.291
18 257331_at ATMG01330 ORF107H 0.262 -0.658
19 253165_at AT4G35320 unknown 0.261 -0.050
20 254294_at AT4G23070 ATRBL7, RHOMBOID-like protein 7, RBL7, RHOMBOID-like protein 7 0.259 -0.421
21 245384_at AT4G16790 [hydroxyproline-rich glycoprotein family protein] 0.250 -0.215
22 250164_at AT5G15280 [Pentatricopeptide repeat (PPR) superfamily protein] 0.248 -0.364
23 248490_at AT5G50940 [RNA-binding KH domain-containing protein] 0.247 -0.970
24 249072_at AT5G44060 unknown 0.242 0.711
25 258576_at AT3G04230 [Ribosomal protein S5 domain 2-like superfamily protein] 0.241 0.842
26 259444_at AT1G02370 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.234 0.202
27 247612_at AT5G60730 [Anion-transporting ATPase] 0.232 -0.269
28 248204_at AT5G54280 ATM2, myosin 2, ATM4, ARABIDOPSIS THALIANA MYOSIN 4, ATMYOS1, ARABIDOPSIS THALIANA MYOSIN 1 0.230 -0.742
29 265066_at AT1G03870 FLA9, FASCICLIN-like arabinoogalactan 9 0.226 0.593
30 247068_at AT5G66800 unknown 0.222 -0.386
31 249693_at AT5G35750 AHK2, histidine kinase 2, HK2, histidine kinase 2 0.221 0.452
32 251711_at AT3G56960 PIP5K4, phosphatidyl inositol monophosphate 5 kinase 4 0.220 -0.652
33 249223_at AT5G42120 LecRK-S.6, L-type lectin receptor kinase S.6 0.219 -0.770
34 266470_at AT2G31080 [non-LTR retrotransposon family (LINE), has a 1.3e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)] 0.218 0.627
35 253669_at AT4G30000 [Dihydropterin pyrophosphokinase / Dihydropteroate synthase] 0.218 -0.362
36 259132_at AT3G02250 [O-fucosyltransferase family protein] 0.216 -0.347
37 255191_at AT4G07370 [gypsy-like retrotransposon family (Athila), has a 1.7e-75 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] 0.215 -0.645
38 267459_at AT2G33850 unknown -0.757 -1.190
39 262206_at AT2G01090 [Ubiquinol-cytochrome C reductase hinge protein] -0.602 1.437
40 260140_at AT1G66390 ATMYB90, MYB90, myb domain protein 90, PAP2, PRODUCTION OF ANTHOCYANIN PIGMENT 2 -0.457 -0.138
41 263391_at AT2G11810 ATMGD3, MGD3, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MGDC, monogalactosyldiacylglycerol synthase type C -0.451 -0.412
42 258802_at AT3G04650 [FAD/NAD(P)-binding oxidoreductase family protein] -0.367 0.089
43 248479_at AT5G50910 unknown -0.342 -1.428
44 255900_at AT1G17830 unknown -0.333 0.432
45 257992_at AT3G19880 [F-box and associated interaction domains-containing protein] -0.331 -0.533
46 266023_at AT2G05930 [copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] -0.327 -0.617
47 264783_at AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 -0.323 0.799
48 261913_at AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 -0.311 -0.698
49 248829_at AT5G47130 [Bax inhibitor-1 family protein] -0.304 0.417
50 255493_at AT4G02690 AtLFG3, LFG3, LIFEGUARD 3 -0.301 -1.042
51 254069_at AT4G25434 ATNUDT10, nudix hydrolase homolog 10, NUDT10, nudix hydrolase homolog 10 -0.296 -0.749
52 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 -0.291 1.369
53 251625_at AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 -0.291 -0.519
54 261736_at AT1G47810 [F-box and associated interaction domains-containing protein] -0.289 -0.883
55 265214_at AT1G05000 AtPFA-DSP1, PFA-DSP1, plant and fungi atypical dual-specificity phosphatase 1 -0.285 -0.099
56 255257_at AT4G05050 UBQ11, ubiquitin 11 -0.282 0.861
57 250408_at AT5G10930 CIPK5, CBL-interacting protein kinase 5, SnRK3.24, SNF1-RELATED PROTEIN KINASE 3.24 -0.276 -0.640
58 260256_at AT1G74350 [Intron maturase, type II family protein] -0.270 -0.055
59 263401_at AT2G04070 [MATE efflux family protein] -0.264 -0.849
60 255347_at AT4G03810 [copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)] -0.263 -0.158
61 254231_at AT4G23810 ATWRKY53, WRKY53 -0.252 -0.449
62 246437_at AT5G17540 [HXXXD-type acyl-transferase family protein] -0.245 -0.269
63 255125_at AT4G08250 [GRAS family transcription factor] -0.243 -0.601
64 265597_at AT2G20142 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.239 -0.207
65 258856_at AT3G02040 AtGDPD1, GDPD1, Glycerophosphodiester phosphodiesterase 1, SRG3, senescence-related gene 3 -0.235 -0.081
66 257416_at AT2G17750 NIP1, NEP-interacting protein 1 -0.233 -0.901
67 260945_at AT1G05950 unknown -0.229 -0.136
68 263850_at AT2G04480 unknown -0.223 0.032
69 263013_at AT1G23380 KNAT6, KNOTTED1-like homeobox gene 6, KNAT6L, KNAT6S -0.220 -0.485
70 252011_at AT3G52720 ACA1, alpha carbonic anhydrase 1, ATACA1, A. THALIANA ALPHA CARBONIC ANHYDRASE 1, CAH1, CARBONIC ANHYDRASE 1 -0.219 -0.458
71 254453_at AT4G21120 AAT1, amino acid transporter 1, CAT1, CATIONIC AMINO ACID TRANSPORTER 1 -0.210 0.210
72 267205_at AT2G30820 unknown -0.207 -0.462
73 256546_at AT3G14820 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.206 -0.896