4.0:Information of module
ataf1-1 mutant Col-0 Un-inoculated
In comparison with GO5; 8h switch to ambient CO2 concentrations; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006807 nitrogen compound metabolic process BP 1.137e-06
GO:0009657 plastid organization BP 2.010e-06
GO:0006725 cellular aromatic compound metabolic pro... BP 1.091e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006950 response to stress BP 2.077e-09
GO:0002376 immune system process BP 2.841e-08
GO:0033554 cellular response to stress BP 3.678e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ataf1-1 mutant Col-0 Un-inoculated		 Log2 signal ratio
GO5; 8h switch to ambient CO2 concentrations;
1 248304_at AT5G53180 ATPTB2, POLYPYRIMIDINE TRACT-BINDING PROTEIN 2, PTB2, polypyrimidine tract-binding protein 2 0.322 -0.014
2 255333_at AT4G04410 [copia-like retrotransposon family, has a 1.7e-176 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] 0.316 0.021
3 248246_at AT5G53200 TRY, TRIPTYCHON 0.204 -0.055
4 250499_at AT5G09730 ATBX3, ATBXL3, BETA-XYLOSIDASE 3, BX3, BXL3, beta-xylosidase 3, XYL3 0.172 -0.047
5 263979_at AT2G42840 PDF1, protodermal factor 1 0.162 -0.132
6 265405_at AT2G16750 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] 0.156 -0.182
7 266508_at AT2G47920 NET3C, Networked 3C 0.153 0.054
8 254043_at AT4G25990 CIL 0.149 0.211
9 259001_at AT3G01960 unknown 0.146 -0.090
10 249069_at AT5G44010 unknown 0.140 -0.147
11 255437_at AT4G03060 AOP2, alkenyl hydroxalkyl producing 2 0.139 -0.025
12 249160_at AT5G42660 unknown 0.136 -0.121
13 249253_at AT5G42060 [DEK, chromatin associated protein] 0.134 0.216
14 247410_at AT5G62990 emb1692, embryo defective 1692 0.131 -0.056
15 264549_at AT1G09440 [Protein kinase superfamily protein] 0.131 -0.086
16 251001_at AT5G02670 unknown 0.126 -0.049
17 250722_at AT5G06190 unknown 0.123 0.002
18 250381_at AT5G11610 [Exostosin family protein] 0.119 -0.011
19 250379_at AT5G11590 TINY2, TINY2 0.119 -0.083
20 257237_at AT3G14890 [phosphoesterase] 0.117 -0.040
21 258509_at AT3G06620 [PAS domain-containing protein tyrosine kinase family protein] 0.114 -0.001
22 260011_at AT1G68110 [ENTH/ANTH/VHS superfamily protein] 0.113 -0.168
23 265063_at AT1G61500 [S-locus lectin protein kinase family protein] 0.113 0.077
24 256653_at AT3G18870 [Mitochondrial transcription termination factor family protein] 0.110 -0.144
25 260609_at AT2G43690 LecRK-V.3, L-type lectin receptor kinase V.3 0.107 -0.057
26 256080_at AT1G20690 [SWI-SNF-related chromatin binding protein] 0.105 0.034
27 257837_at AT3G25200 unknown 0.105 0.001
28 266337_at AT2G32390 ATGLR3.5, glutamate receptor 3.5, GLR3.5, glutamate receptor 3.5, GLR6 0.102 -0.012
29 266395_at AT2G43100 ATLEUD1, IPMI2, isopropylmalate isomerase 2 0.102 -0.027
30 245449_at AT4G16870 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] 0.100 0.137
31 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] 0.099 -0.127
32 253573_at AT4G31020 [alpha/beta-Hydrolases superfamily protein] 0.098 -0.002
33 263609_at AT2G16250 [Leucine-rich repeat protein kinase family protein] 0.097 -0.085
34 250587_at AT5G07640 [RING/U-box superfamily protein] 0.097 -0.050
35 263599_at AT2G01830 AHK4, ARABIDOPSIS HISTIDINE KINASE 4, ATCRE1, CRE1, CYTOKININ RESPONSE 1, WOL, WOODEN LEG, WOL1, WOODEN LEG 1 0.096 -0.003
36 257129_at AT3G20100 CYP705A19, cytochrome P450, family 705, subfamily A, polypeptide 19 0.095 -0.049
37 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 0.094 -0.202
38 263168_at AT1G03020 [Thioredoxin superfamily protein] 0.093 -0.163
39 247518_at AT5G61800 [Pentatricopeptide repeat (PPR) superfamily protein] 0.091 -0.042
40 253269_at AT4G34140 [D111/G-patch domain-containing protein] 0.091 0.099
41 248658_at AT5G48600 ATCAP-C, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, ATSMC3, structural maintenance of chromosome 3, ATSMC4, ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, SMC3, structural maintenance of chromosome 3 0.090 0.041
42 266668_at AT2G29760 OTP81, ORGANELLE TRANSCRIPT PROCESSING 81 0.090 -0.099
43 259172_at AT3G03630 CS26, cysteine synthase 26 0.088 -0.110
44 252365_at AT3G48350 CEP3, cysteine endopeptidase 3 0.087 -0.040
45 264377_at AT2G25060 AtENODL14, ENODL14, early nodulin-like protein 14 0.087 -0.085
46 252954_at AT4G38660 [Pathogenesis-related thaumatin superfamily protein] 0.085 -0.084
47 249946_at AT5G19170 unknown 0.085 -0.140
48 250056_at AT5G17660 [tRNA (guanine-N-7) methyltransferase] 0.085 -0.118
49 246330_at AT3G43600 AAO2, aldehyde oxidase 2, AO3, aldehyde oxidase 3, AOgamma, Aldehyde oxidase gamma, atAO-2, Arabidopsis thaliana aldehyde oxidase 2, AtAO3, Arabidopsis thaliana aldehyde oxidase 3 0.085 0.085
50 249468_at AT5G39650 unknown 0.084 -0.024
51 251174_at AT3G63200 PLA IIIB, PLP9, PATATIN-like protein 9 0.084 -0.175
52 267057_at AT2G32500 [Stress responsive alpha-beta barrel domain protein] 0.084 -0.132
53 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 -0.412 0.535
54 261763_at AT1G15520 ABCG40, ATP-binding cassette G40, ATABCG40, Arabidopsis thaliana ATP-binding cassette G40, ATPDR12, PLEIOTROPIC DRUG RESISTANCE 12, PDR12, pleiotropic drug resistance 12 -0.341 0.617
55 245976_at AT5G13080 ATWRKY75, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY75, WRKY DNA-binding protein 75 -0.205 0.646
56 255419_at AT4G03230 [S-locus lectin protein kinase family protein] -0.203 0.047
57 253519_at AT4G31240 AtNRX2, NRX2, nucleoredoxin 2 -0.201 0.049
58 246600_at AT5G14930 SAG101, senescence-associated gene 101 -0.194 0.135
59 264905_at AT2G17430 ATMLO7, MLO7, MILDEW RESISTANCE LOCUS O 7, NTA, NORTIA -0.190 -0.003
60 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 -0.184 0.033
61 247812_at AT5G58390 [Peroxidase superfamily protein] -0.184 -0.039
62 254409_at AT4G21400 CRK28, cysteine-rich RLK (RECEPTOR-like protein kinase) 28 -0.176 0.276
63 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] -0.170 0.224
64 260783_at AT1G06160 ORA59, octadecanoid-responsive Arabidopsis AP2/ERF 59 -0.162 0.426
65 259573_at AT1G20390 [gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -0.162 0.042
66 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 -0.162 -0.039
67 264071_at AT2G27920 SCPL51, serine carboxypeptidase-like 51 -0.159 -0.163
68 250910_at AT5G03720 AT-HSFA3, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, HSFA3, heat shock transcription factor A3 -0.153 0.132
69 261216_at AT1G33030 [O-methyltransferase family protein] -0.150 0.604
70 259753_at AT1G71050 HIPP20, heavy metal associated isoprenylated plant protein 20 -0.148 -0.126
71 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) -0.148 0.054
72 260386_at AT1G74010 [Calcium-dependent phosphotriesterase superfamily protein] -0.146 -0.010
73 265725_at AT2G32030 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.145 0.676
74 248164_at AT5G54490 PBP1, pinoid-binding protein 1 -0.142 0.324
75 267425_at AT2G34810 [FAD-binding Berberine family protein] -0.142 -0.104
76 249889_at AT5G22540 unknown -0.141 0.159
77 251231_at AT3G62760 ATGSTF13 -0.139 0.002
78 259401_at AT1G17760 ATCSTF77, ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, CSTF77 -0.139 0.046
79 255806_at AT4G10260 [pfkB-like carbohydrate kinase family protein] -0.139 0.018
80 250635_at AT5G07510 ATGRP-4, ARABIDOPSIS THALIANA GLYCINE-RICH PROTEIN 4, ATGRP14, ARABIDOPSIS THALIANA GLYCINE-RICH PROTEIN 14, GRP-4, GLYCINE-RICH PROTEIN 4, GRP14, glycine-rich protein 14 -0.138 -0.030
81 247477_at AT5G62340 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.136 -0.010
82 249262_at AT5G41720 unknown -0.135 -0.058
83 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A -0.133 0.558
84 261700_at AT1G32690 unknown -0.131 -0.049
85 263363_at AT2G03850 [Late embryogenesis abundant protein (LEA) family protein] -0.131 -0.057
86 245031_at AT2G26360 [Mitochondrial substrate carrier family protein] -0.131 -0.138
87 258932_at AT3G10150 ATPAP16, PAP16, purple acid phosphatase 16 -0.129 -0.047
88 260134_at AT1G66370 AtMYB113, myb domain protein 113, MYB113, myb domain protein 113 -0.126 -0.143
89 250400_at AT5G10740 [Protein phosphatase 2C family protein] -0.125 -0.036
90 248154_at AT5G54400 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.125 -0.034
91 253671_at AT4G29990 [Leucine-rich repeat transmembrane protein kinase protein] -0.125 -0.044
92 262989_at AT1G23420 INO, INNER NO OUTER -0.124 -0.089
93 248877_at AT5G46140 unknown -0.124 -0.093
94 262042_at AT1G80140 [Pectin lyase-like superfamily protein] -0.122 -0.082
95 264522_at AT1G10050 [glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein] -0.121 0.122
96 249747_at AT5G24600 unknown -0.121 0.011
97 247487_at AT5G62150 [peptidoglycan-binding LysM domain-containing protein] -0.119 0.275
98 252820_at AT3G42640 AHA8, H(+)-ATPase 8, HA8, H(+)-ATPase 8 -0.118 0.040
99 267122_at AT2G23550 ABE1, ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, ATMES6, METHYL ESTERASE 6, MES6, methyl esterase 6 -0.117 -0.028
100 248319_at AT5G52710 [Copper transport protein family] -0.117 0.014
101 264826_at AT1G03410 2A6 -0.114 -0.106
102 256602_at AT3G28310 unknown -0.112 -0.093
103 249743_at AT5G24540 BGLU31, beta glucosidase 31 -0.112 0.101