4.0:Information of module
rosette Dark Wounded
In comparison with root callus inducing medium 96 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 1.221e-52
GO:1901700 response to oxygen-containing compound BP 1.203e-49
GO:0010200 response to chitin BP 9.871e-46
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009725 response to hormone BP 4.174e-14
GO:0009719 response to endogenous stimulus BP 1.205e-13
GO:0010033 response to organic substance BP 3.347e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
rosette Dark Wounded		 Log2 signal ratio
root callus inducing medium 96 h
1 253832_at AT4G27654 unknown 0.864 -1.148
2 264617_at AT2G17660 [RPM1-interacting protein 4 (RIN4) family protein] 0.863 -1.166
3 251950_at AT3G53600 [C2H2-type zinc finger family protein] 0.843 -1.294
4 252739_at AT3G43250 unknown 0.792 -0.910
5 249197_at AT5G42380 CML37, calmodulin like 37 0.780 -1.342
6 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.768 -1.160
7 256009_at AT1G19210 [Integrase-type DNA-binding superfamily protein] 0.728 -1.305
8 252487_at AT3G46660 UGT76E12, UDP-glucosyl transferase 76E12 0.690 -0.124
9 249522_at AT5G38700 unknown 0.676 -0.879
10 266455_at AT2G22760 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.647 -1.350
11 245677_at AT1G56660 unknown 0.635 -0.499
12 261899_at AT1G80820 ATCCR2, CCR2, cinnamoyl coa reductase 0.593 -0.601
13 261984_at AT1G33760 [Integrase-type DNA-binding superfamily protein] 0.581 -0.512
14 253859_at AT4G27657 unknown 0.572 -1.115
15 265618_at AT2G25460 unknown 0.570 -0.935
16 248392_at AT5G52050 [MATE efflux family protein] 0.561 -0.710
17 264661_at AT1G09950 RAS1, RESPONSE TO ABA AND SALT 1 0.559 -0.586
18 256884_at AT3G15200 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.544 -0.241
19 265030_at AT1G61610 [S-locus lectin protein kinase family protein] 0.528 0.118
20 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] 0.522 -0.715
21 257840_at AT3G25250 AGC2, AGC2-1, AGC2 kinase 1, AtOXI1, OXI1, oxidative signal-inducible1 0.522 -0.670
22 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.515 -0.442
23 248959_at AT5G45630 unknown 0.513 -0.328
24 256159_at AT1G30135 JAZ8, jasmonate-zim-domain protein 8, TIFY5A 0.506 -1.231
25 247360_at AT5G63450 CYP94B1, cytochrome P450, family 94, subfamily B, polypeptide 1 0.504 -1.019
26 250098_at AT5G17350 unknown 0.492 -0.761
27 253830_at AT4G27652 unknown 0.489 -0.631
28 253293_at AT4G33905 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] 0.482 -0.259
29 264415_at AT1G43160 RAP2.6, related to AP2 6 0.477 -1.595
30 254323_at AT4G22620 SAUR34, SMALL AUXIN UPREGULATED RNA 34 0.468 -0.827
31 262756_at AT1G16370 ATOCT6, ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, OCT6, organic cation/carnitine transporter 6 0.467 -0.341
32 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 0.466 -0.702
33 265632_at AT2G14290 unknown 0.463 -0.813
34 258516_at AT3G06490 AtMYB108, myb domain protein 108, BOS1, BOTRYTIS-SUSCEPTIBLE1, MYB108, myb domain protein 108 0.463 -0.737
35 247208_at AT5G64870 [SPFH/Band 7/PHB domain-containing membrane-associated protein family] 0.462 -1.238
36 264862_at AT1G24330 [ARM repeat superfamily protein] 0.459 -0.138
37 253799_at AT4G28140 [Integrase-type DNA-binding superfamily protein] 0.451 -0.595
38 260237_at AT1G74430 ATMYB95, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 95, ATMYBCP66, ARABIDOPSIS THALIANA MYB DOMAIN CONTAINING PROTEIN 66, MYB95, myb domain protein 95 0.446 -0.108
39 263754_at AT2G21510 [DNAJ heat shock N-terminal domain-containing protein] 0.444 -0.667
40 252045_at AT3G52450 AtPUB22, PUB22, plant U-box 22 0.443 -0.606
41 262616_at AT1G06620 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.436 -0.512
42 252368_at AT3G48520 CYP94B3, cytochrome P450, family 94, subfamily B, polypeptide 3 0.430 -0.672
43 253643_at AT4G29780 unknown 0.427 -0.886
44 261101_at AT1G63030 ddf2, DWARF AND DELAYED FLOWERING 2 0.425 -0.509
45 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.420 -0.852
46 248934_at AT5G46080 [Protein kinase superfamily protein] 0.418 -0.550
47 262448_at AT1G49450 [Transducin/WD40 repeat-like superfamily protein] 0.414 0.054
48 256044_at AT1G07160 [Protein phosphatase 2C family protein] 0.406 -0.372
49 261443_at AT1G28480 GRX480, roxy19 0.406 -0.873
50 264217_at AT1G60190 AtPUB19, PUB19, plant U-box 19 0.405 -0.668
51 259705_at AT1G77450 anac032, NAC domain containing protein 32, NAC032, NAC domain containing protein 32 0.405 -0.284
52 262211_at AT1G74930 ORA47 0.405 -1.141
53 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 0.402 -0.135
54 258139_at AT3G24520 AT-HSFC1, HSFC1, heat shock transcription factor C1 0.399 -0.059
55 266271_at AT2G29440 ATGSTU6, glutathione S-transferase tau 6, GST24, GLUTATHIONE S-TRANSFERASE 24, GSTU6, glutathione S-transferase tau 6 0.397 -0.283
56 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 0.395 -0.920
57 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] 0.392 -0.518
58 254996_at AT4G10390 [Protein kinase superfamily protein] 0.391 -0.409
59 248400_at AT5G52020 [Integrase-type DNA-binding superfamily protein] 0.390 -1.093
60 262452_at AT1G11210 unknown 0.386 -0.763
61 247933_at AT5G56980 unknown 0.385 -0.339
62 246432_at AT5G17490 AtRGL3, RGL3, RGA-like protein 3 0.383 0.198
63 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.381 -0.365
64 255884_at AT1G20310 unknown 0.374 -0.753
65 247047_at AT5G66650 unknown 0.372 -0.818
66 265359_at AT2G16720 ATMYB7, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, ATY49, MYB7, myb domain protein 7 0.372 -0.818
67 247030_at AT5G67210 IRX15-L, IRX15-LIKE 0.372 -0.435
68 252200_at AT3G50280 [HXXXD-type acyl-transferase family protein] 0.370 -0.519
69 245151_at AT2G47550 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.365 -0.119
70 252965_at AT4G38860 SAUR16, SMALL AUXIN UPREGULATED RNA 16 -0.475 -0.028
71 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.389 0.990
72 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 -0.377 -0.101
73 251169_at AT3G63210 MARD1, MEDIATOR OF ABA-REGULATED DORMANCY 1 -0.339 0.166
74 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 -0.332 0.014
75 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 -0.320 -0.010
76 260770_at AT1G49200 [RING/U-box superfamily protein] -0.315 0.125
77 265724_at AT2G32100 ATOFP16, RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, OFP16, ovate family protein 16 -0.303 0.946
78 256598_at AT3G30180 BR6OX2, brassinosteroid-6-oxidase 2, CYP85A2 -0.297 0.708
79 265573_at AT2G28200 [C2H2-type zinc finger family protein] -0.294 0.138
80 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 -0.282 -0.083
81 247980_at AT5G56860 GATA21, GATA TRANSCRIPTION FACTOR 21, GNC, GATA, nitrate-inducible, carbon metabolism-involved -0.278 -0.145
82 252970_at AT4G38850 ATSAUR15, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-AC1, ARABIDOPSIS COLUMBIA SAUR GENE 1, SAUR15, SMALL AUXIN UPREGULATED 15, SAUR_AC1, SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA -0.271 -0.029
83 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.271 0.684
84 260070_at AT1G73830 BEE3, BR enhanced expression 3 -0.270 -0.113
85 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 -0.267 0.078
86 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 -0.265 -0.138
87 257964_at AT3G19850 [Phototropic-responsive NPH3 family protein] -0.251 0.280
88 253255_at AT4G34760 SAUR50, SMALL AUXIN UPREGULATED RNA 50 -0.247 0.299
89 263133_at AT1G78450 [SOUL heme-binding family protein] -0.241 -0.094
90 251183_at AT3G62630 unknown -0.232 0.033
91 265726_at AT2G32010 CVL1, CVP2 like 1 -0.231 0.114
92 259373_at AT1G69160 unknown -0.231 -0.509
93 256299_at AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 -0.229 0.737
94 257294_at AT3G15570 [Phototropic-responsive NPH3 family protein] -0.229 -0.082
95 252972_at AT4G38840 SAUR14, SMALL AUXIN UPREGULATED RNA 14 -0.228 -0.043
96 265342_at AT2G18300 HBI1, HOMOLOG OF BEE2 INTERACTING WITH IBH 1 -0.226 -0.131
97 265584_at AT2G20180 PIF1, PHY-INTERACTING FACTOR 1, PIL5, phytochrome interacting factor 3-like 5 -0.226 -0.162
98 265892_at AT2G15020 unknown -0.221 -0.159
99 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 -0.220 -0.005
100 247878_at AT5G57760 unknown -0.218 -0.161
101 263953_at AT2G36050 ATOFP15, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15, OFP15, ovate family protein 15 -0.216 0.216
102 260081_at AT1G78170 unknown -0.213 0.448
103 260266_at AT1G68520 BBX14, B-box domain protein 14 -0.211 -0.023
104 250167_at AT5G15310 ATMIXTA, ATMYB16, myb domain protein 16, MYB16, myb domain protein 16 -0.209 -0.070
105 260167_at AT1G71970 unknown -0.207 0.226
106 255579_at AT4G01460 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.207 -0.030
107 267535_at AT2G41940 ZFP8, zinc finger protein 8 -0.206 -0.096
108 262598_at AT1G15260 unknown -0.204 -0.086
109 267628_at AT2G42280 AKS3, ABA-responsive kinase substrate 3, FBH4, FLOWERING BHLH 4 -0.198 0.017
110 256980_at AT3G26932 DRB3, dsRNA-binding protein 3 -0.197 -0.044
111 263688_at AT1G26920 unknown -0.195 -0.001
112 254810_at AT4G12390 PME1, pectin methylesterase inhibitor 1 -0.194 0.204
113 249035_at AT5G44190 ATGLK2, GLK2, GOLDEN2-like 2, GPRI2, GBF'S PRO-RICH REGION-INTERACTING FACTOR 2 -0.191 -0.251
114 249109_at AT5G43700 ATAUX2-11, AUXIN INDUCIBLE 2-11, IAA4, indole-3-acetic acid inducible 4 -0.189 0.478
115 261538_at AT1G01830 [ARM repeat superfamily protein] -0.188 0.119
116 260041_at AT1G68780 [RNI-like superfamily protein] -0.188 -0.053
117 246275_at AT4G36540 BEE2, BR enhanced expression 2 -0.184 -0.191
118 259103_at AT3G11690 unknown -0.181 0.260
119 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.181 0.012
120 258038_at AT3G21260 GLTP3, GLYCOLIPID TRANSFER PROTEIN 3 -0.180 -0.766
121 257610_at AT3G13810 AtIDD11, indeterminate(ID)-domain 11, IDD11, indeterminate(ID)-domain 11 -0.180 -0.056
122 250408_at AT5G10930 CIPK5, CBL-interacting protein kinase 5, SnRK3.24, SNF1-RELATED PROTEIN KINASE 3.24 -0.179 0.310
123 263597_at AT2G01870 unknown -0.178 0.020
124 251946_at AT3G53540 TRM19, TON1 Recruiting Motif 19 -0.178 0.255
125 245901_at AT5G11060 KNAT4, KNOTTED1-like homeobox gene 4 -0.177 -0.093
126 264900_at AT1G23080 ATPIN7, ARABIDOPSIS PIN-FORMED 7, PIN7, PIN-FORMED 7 -0.176 0.594
127 255774_at AT1G18620 TRM3, TON1 Recruiting Motif 3 -0.174 0.084
128 262281_at AT1G68570 AtNPF3.1, NPF3.1, NRT1/ PTR family 3.1 -0.174 -0.270
129 266110_at AT2G02080 AtIDD4, indeterminate(ID)-domain 4, IDD4, indeterminate(ID)-domain 4 -0.174 -0.387
130 248046_at AT5G56040 SKM2, STERILITY-REGULATING KINASE MEMBER 2 -0.173 0.081
131 262263_at AT1G70940 ATPIN3, ARABIDOPSIS PIN-FORMED 3, PIN3, PIN-FORMED 3 -0.171 0.458
132 261480_at AT1G14280 PKS2, phytochrome kinase substrate 2 -0.171 -0.412
133 251412_at AT3G60220 ATL4, TOXICOS EN LEVADURA 4, TL4, TOXICOS EN LEVADURA 4 -0.169 0.445
134 262711_at AT1G16500 unknown -0.165 -0.112
135 245431_at AT4G17080 [Histone H3 K4-specific methyltransferase SET7/9 family protein] -0.163 0.203
136 267561_at AT2G45590 [Protein kinase superfamily protein] -0.161 0.269
137 252322_at AT3G48550 unknown -0.161 -0.326
138 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 -0.159 -0.295