4.0:Information of module
rosette Dark Wounded
In comparison with root epidermis and lateral root cap 40 mM NaCl help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 1.221e-52
GO:1901700 response to oxygen-containing compound BP 1.203e-49
GO:0010200 response to chitin BP 9.871e-46
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009725 response to hormone BP 4.174e-14
GO:0009719 response to endogenous stimulus BP 1.205e-13
GO:0010033 response to organic substance BP 3.347e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
rosette Dark Wounded		 Log2 signal ratio
root epidermis and lateral root cap 40 mM NaCl
1 253832_at AT4G27654 unknown 0.864 0.367
2 264617_at AT2G17660 [RPM1-interacting protein 4 (RIN4) family protein] 0.863 0.535
3 251950_at AT3G53600 [C2H2-type zinc finger family protein] 0.843 -0.289
4 252739_at AT3G43250 unknown 0.792 0.070
5 249197_at AT5G42380 CML37, calmodulin like 37 0.780 0.638
6 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.768 0.158
7 256009_at AT1G19210 [Integrase-type DNA-binding superfamily protein] 0.728 0.345
8 252487_at AT3G46660 UGT76E12, UDP-glucosyl transferase 76E12 0.690 0.170
9 249522_at AT5G38700 unknown 0.676 0.115
10 266455_at AT2G22760 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.647 0.263
11 245677_at AT1G56660 unknown 0.635 0.645
12 261899_at AT1G80820 ATCCR2, CCR2, cinnamoyl coa reductase 0.593 0.105
13 261984_at AT1G33760 [Integrase-type DNA-binding superfamily protein] 0.581 -0.009
14 253859_at AT4G27657 unknown 0.572 -0.017
15 265618_at AT2G25460 unknown 0.570 0.029
16 248392_at AT5G52050 [MATE efflux family protein] 0.561 0.391
17 264661_at AT1G09950 RAS1, RESPONSE TO ABA AND SALT 1 0.559 0.490
18 256884_at AT3G15200 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.544 -0.016
19 265030_at AT1G61610 [S-locus lectin protein kinase family protein] 0.528 -0.017
20 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] 0.522 -0.283
21 257840_at AT3G25250 AGC2, AGC2-1, AGC2 kinase 1, AtOXI1, OXI1, oxidative signal-inducible1 0.522 0.066
22 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.515 0.342
23 248959_at AT5G45630 unknown 0.513 0.238
24 256159_at AT1G30135 JAZ8, jasmonate-zim-domain protein 8, TIFY5A 0.506 0.073
25 247360_at AT5G63450 CYP94B1, cytochrome P450, family 94, subfamily B, polypeptide 1 0.504 0.308
26 250098_at AT5G17350 unknown 0.492 0.136
27 253830_at AT4G27652 unknown 0.489 -0.035
28 253293_at AT4G33905 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] 0.482 0.216
29 264415_at AT1G43160 RAP2.6, related to AP2 6 0.477 0.319
30 254323_at AT4G22620 SAUR34, SMALL AUXIN UPREGULATED RNA 34 0.468 0.070
31 262756_at AT1G16370 ATOCT6, ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, OCT6, organic cation/carnitine transporter 6 0.467 0.031
32 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 0.466 0.278
33 265632_at AT2G14290 unknown 0.463 -0.055
34 258516_at AT3G06490 AtMYB108, myb domain protein 108, BOS1, BOTRYTIS-SUSCEPTIBLE1, MYB108, myb domain protein 108 0.463 0.139
35 247208_at AT5G64870 [SPFH/Band 7/PHB domain-containing membrane-associated protein family] 0.462 0.654
36 264862_at AT1G24330 [ARM repeat superfamily protein] 0.459 0.057
37 253799_at AT4G28140 [Integrase-type DNA-binding superfamily protein] 0.451 0.197
38 260237_at AT1G74430 ATMYB95, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 95, ATMYBCP66, ARABIDOPSIS THALIANA MYB DOMAIN CONTAINING PROTEIN 66, MYB95, myb domain protein 95 0.446 0.069
39 263754_at AT2G21510 [DNAJ heat shock N-terminal domain-containing protein] 0.444 0.199
40 252045_at AT3G52450 AtPUB22, PUB22, plant U-box 22 0.443 0.160
41 262616_at AT1G06620 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.436 -0.063
42 252368_at AT3G48520 CYP94B3, cytochrome P450, family 94, subfamily B, polypeptide 3 0.430 0.759
43 253643_at AT4G29780 unknown 0.427 0.253
44 261101_at AT1G63030 ddf2, DWARF AND DELAYED FLOWERING 2 0.425 0.027
45 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.420 0.475
46 248934_at AT5G46080 [Protein kinase superfamily protein] 0.418 0.452
47 262448_at AT1G49450 [Transducin/WD40 repeat-like superfamily protein] 0.414 0.297
48 256044_at AT1G07160 [Protein phosphatase 2C family protein] 0.406 0.795
49 261443_at AT1G28480 GRX480, roxy19 0.406 0.467
50 264217_at AT1G60190 AtPUB19, PUB19, plant U-box 19 0.405 0.400
51 259705_at AT1G77450 anac032, NAC domain containing protein 32, NAC032, NAC domain containing protein 32 0.405 0.170
52 262211_at AT1G74930 ORA47 0.405 0.218
53 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 0.402 0.060
54 258139_at AT3G24520 AT-HSFC1, HSFC1, heat shock transcription factor C1 0.399 0.541
55 266271_at AT2G29440 ATGSTU6, glutathione S-transferase tau 6, GST24, GLUTATHIONE S-TRANSFERASE 24, GSTU6, glutathione S-transferase tau 6 0.397 0.229
56 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 0.395 0.614
57 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] 0.392 0.832
58 254996_at AT4G10390 [Protein kinase superfamily protein] 0.391 0.107
59 248400_at AT5G52020 [Integrase-type DNA-binding superfamily protein] 0.390 -0.394
60 262452_at AT1G11210 unknown 0.386 0.686
61 247933_at AT5G56980 unknown 0.385 0.077
62 246432_at AT5G17490 AtRGL3, RGL3, RGA-like protein 3 0.383 0.583
63 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.381 0.266
64 255884_at AT1G20310 unknown 0.374 0.131
65 247047_at AT5G66650 unknown 0.372 0.264
66 265359_at AT2G16720 ATMYB7, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, ATY49, MYB7, myb domain protein 7 0.372 0.629
67 247030_at AT5G67210 IRX15-L, IRX15-LIKE 0.372 0.385
68 252200_at AT3G50280 [HXXXD-type acyl-transferase family protein] 0.370 0.133
69 245151_at AT2G47550 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.365 -0.155
70 252965_at AT4G38860 SAUR16, SMALL AUXIN UPREGULATED RNA 16 -0.475 -0.097
71 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.389 -0.067
72 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 -0.377 0.040
73 251169_at AT3G63210 MARD1, MEDIATOR OF ABA-REGULATED DORMANCY 1 -0.339 -0.060
74 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 -0.332 -0.119
75 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 -0.320 -0.005
76 260770_at AT1G49200 [RING/U-box superfamily protein] -0.315 -0.005
77 265724_at AT2G32100 ATOFP16, RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, OFP16, ovate family protein 16 -0.303 0.013
78 256598_at AT3G30180 BR6OX2, brassinosteroid-6-oxidase 2, CYP85A2 -0.297 -0.053
79 265573_at AT2G28200 [C2H2-type zinc finger family protein] -0.294 0.136
80 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 -0.282 0.007
81 247980_at AT5G56860 GATA21, GATA TRANSCRIPTION FACTOR 21, GNC, GATA, nitrate-inducible, carbon metabolism-involved -0.278 -0.049
82 252970_at AT4G38850 ATSAUR15, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-AC1, ARABIDOPSIS COLUMBIA SAUR GENE 1, SAUR15, SMALL AUXIN UPREGULATED 15, SAUR_AC1, SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA -0.271 0.046
83 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.271 -0.246
84 260070_at AT1G73830 BEE3, BR enhanced expression 3 -0.270 -0.074
85 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 -0.267 -0.023
86 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 -0.265 -0.065
87 257964_at AT3G19850 [Phototropic-responsive NPH3 family protein] -0.251 -0.037
88 253255_at AT4G34760 SAUR50, SMALL AUXIN UPREGULATED RNA 50 -0.247 -0.103
89 263133_at AT1G78450 [SOUL heme-binding family protein] -0.241 0.050
90 251183_at AT3G62630 unknown -0.232 0.074
91 265726_at AT2G32010 CVL1, CVP2 like 1 -0.231 0.056
92 259373_at AT1G69160 unknown -0.231 -0.014
93 256299_at AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 -0.229 0.037
94 257294_at AT3G15570 [Phototropic-responsive NPH3 family protein] -0.229 -0.009
95 252972_at AT4G38840 SAUR14, SMALL AUXIN UPREGULATED RNA 14 -0.228 -0.036
96 265342_at AT2G18300 HBI1, HOMOLOG OF BEE2 INTERACTING WITH IBH 1 -0.226 -0.078
97 265584_at AT2G20180 PIF1, PHY-INTERACTING FACTOR 1, PIL5, phytochrome interacting factor 3-like 5 -0.226 -0.027
98 265892_at AT2G15020 unknown -0.221 0.123
99 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 -0.220 -0.082
100 247878_at AT5G57760 unknown -0.218 -0.097
101 263953_at AT2G36050 ATOFP15, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15, OFP15, ovate family protein 15 -0.216 -0.120
102 260081_at AT1G78170 unknown -0.213 -0.120
103 260266_at AT1G68520 BBX14, B-box domain protein 14 -0.211 0.099
104 250167_at AT5G15310 ATMIXTA, ATMYB16, myb domain protein 16, MYB16, myb domain protein 16 -0.209 0.055
105 260167_at AT1G71970 unknown -0.207 -0.055
106 255579_at AT4G01460 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.207 0.040
107 267535_at AT2G41940 ZFP8, zinc finger protein 8 -0.206 -0.192
108 262598_at AT1G15260 unknown -0.204 -0.030
109 267628_at AT2G42280 AKS3, ABA-responsive kinase substrate 3, FBH4, FLOWERING BHLH 4 -0.198 -0.050
110 256980_at AT3G26932 DRB3, dsRNA-binding protein 3 -0.197 -0.129
111 263688_at AT1G26920 unknown -0.195 -0.212
112 254810_at AT4G12390 PME1, pectin methylesterase inhibitor 1 -0.194 0.221
113 249035_at AT5G44190 ATGLK2, GLK2, GOLDEN2-like 2, GPRI2, GBF'S PRO-RICH REGION-INTERACTING FACTOR 2 -0.191 0.108
114 249109_at AT5G43700 ATAUX2-11, AUXIN INDUCIBLE 2-11, IAA4, indole-3-acetic acid inducible 4 -0.189 -0.095
115 261538_at AT1G01830 [ARM repeat superfamily protein] -0.188 -0.061
116 260041_at AT1G68780 [RNI-like superfamily protein] -0.188 -0.023
117 246275_at AT4G36540 BEE2, BR enhanced expression 2 -0.184 -0.113
118 259103_at AT3G11690 unknown -0.181 0.041
119 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.181 0.001
120 258038_at AT3G21260 GLTP3, GLYCOLIPID TRANSFER PROTEIN 3 -0.180 0.299
121 257610_at AT3G13810 AtIDD11, indeterminate(ID)-domain 11, IDD11, indeterminate(ID)-domain 11 -0.180 0.022
122 250408_at AT5G10930 CIPK5, CBL-interacting protein kinase 5, SnRK3.24, SNF1-RELATED PROTEIN KINASE 3.24 -0.179 0.004
123 263597_at AT2G01870 unknown -0.178 -0.065
124 251946_at AT3G53540 TRM19, TON1 Recruiting Motif 19 -0.178 0.144
125 245901_at AT5G11060 KNAT4, KNOTTED1-like homeobox gene 4 -0.177 0.095
126 264900_at AT1G23080 ATPIN7, ARABIDOPSIS PIN-FORMED 7, PIN7, PIN-FORMED 7 -0.176 0.046
127 255774_at AT1G18620 TRM3, TON1 Recruiting Motif 3 -0.174 -0.232
128 262281_at AT1G68570 AtNPF3.1, NPF3.1, NRT1/ PTR family 3.1 -0.174 0.044
129 266110_at AT2G02080 AtIDD4, indeterminate(ID)-domain 4, IDD4, indeterminate(ID)-domain 4 -0.174 -0.095
130 248046_at AT5G56040 SKM2, STERILITY-REGULATING KINASE MEMBER 2 -0.173 0.027
131 262263_at AT1G70940 ATPIN3, ARABIDOPSIS PIN-FORMED 3, PIN3, PIN-FORMED 3 -0.171 0.305
132 261480_at AT1G14280 PKS2, phytochrome kinase substrate 2 -0.171 -0.545
133 251412_at AT3G60220 ATL4, TOXICOS EN LEVADURA 4, TL4, TOXICOS EN LEVADURA 4 -0.169 -0.131
134 262711_at AT1G16500 unknown -0.165 0.057
135 245431_at AT4G17080 [Histone H3 K4-specific methyltransferase SET7/9 family protein] -0.163 0.161
136 267561_at AT2G45590 [Protein kinase superfamily protein] -0.161 0.064
137 252322_at AT3G48550 unknown -0.161 -0.027
138 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 -0.159 -0.002