4.0:Information of module
Col-0 INA 48h
In comparison with Dark 2day ivd help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009814 defense response, incompatible interacti... BP 6.193e-89
GO:0009627 systemic acquired resistance BP 6.355e-88
GO:0002376 immune system process BP 1.562e-85
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0016132 brassinosteroid biosynthetic process BP 5.336e-07
GO:0016129 phytosteroid biosynthetic process BP 6.364e-07
GO:0015979 photosynthesis BP 8.367e-07
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 INA 48h		 Log2 signal ratio
Dark 2day ivd
1 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 1.003 -2.374
2 249940_at AT5G22380 anac090, NAC domain containing protein 90, NAC090, NAC domain containing protein 90 0.822 -5.852
3 258947_at AT3G01830 [Calcium-binding EF-hand family protein] 0.803 -5.747
4 259428_at AT1G01560 ATMPK11, MAP kinase 11, MPK11, MAP kinase 11 0.788 -4.207
5 247684_at AT5G59670 [Leucine-rich repeat protein kinase family protein] 0.781 -5.054
6 254255_at AT4G23220 CRK14, cysteine-rich RLK (RECEPTOR-like protein kinase) 14 0.751 -2.677
7 254975_at AT4G10500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.750 -6.393
8 248322_at AT5G52760 [Copper transport protein family] 0.731 -7.378
9 252403_at AT3G48080 [alpha/beta-Hydrolases superfamily protein] 0.729 -2.649
10 259385_at AT1G13470 unknown 0.723 -7.848
11 261339_at AT1G35710 [Protein kinase family protein with leucine-rich repeat domain] 0.715 -2.943
12 247602_at AT5G60900 RLK1, receptor-like protein kinase 1 0.686 -3.584
13 254869_at AT4G11890 ARCK1, ABA- AND OSMOTIC-STRESS-INDUCIBLE RECEPTOR-LIKE CYTOSOLIC KINASE1, CRK45, cysteine-rich receptor-like protein kinase 45 0.685 -2.038
14 252549_at AT3G45860 CRK4, cysteine-rich RLK (RECEPTOR-like protein kinase) 4 0.685 -1.853
15 267546_at AT2G32680 AtRLP23, receptor like protein 23, RLP23, receptor like protein 23 0.683 -5.607
16 260904_at AT1G02450 NIMIN-1, NIMIN1, NIM1-interacting 1 0.649 -4.487
17 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.628 -4.392
18 252060_at AT3G52430 ATPAD4, ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, PAD4, PHYTOALEXIN DEFICIENT 4 0.620 -5.315
19 252098_at AT3G51330 [Eukaryotic aspartyl protease family protein] 0.611 -0.629
20 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.609 -1.969
21 246405_at AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.609 -6.404
22 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 0.604 -3.609
23 248169_at AT5G54610 ANK, ankyrin, BDA1, bian da 2 (becoming big in Chinese) 0.600 -6.626
24 250445_at AT5G10760 [Eukaryotic aspartyl protease family protein] 0.589 -6.306
25 254271_at AT4G23150 CRK7, cysteine-rich RLK (RECEPTOR-like protein kinase) 7 0.588 -6.792
26 252681_at AT3G44350 anac061, NAC domain containing protein 61, NAC061, NAC domain containing protein 61 0.583 -5.866
27 254229_at AT4G23610 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.576 -4.235
28 263565_at AT2G15390 atfut4, FUT4, fucosyltransferase 4 0.572 -2.939
29 254416_at AT4G21380 ARK3, receptor kinase 3, RK3, receptor kinase 3 0.568 -3.046
30 252345_at AT3G48640 unknown 0.565 -5.084
31 256366_at AT1G66880 [Protein kinase superfamily protein] 0.564 -0.856
32 252346_at AT3G48650 [pseudogene] 0.561 -4.127
33 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.557 -0.911
34 259561_at AT1G21250 AtWAK1, PRO25, WAK1, cell wall-associated kinase 1 0.556 -4.336
35 255319_at AT4G04220 AtRLP46, receptor like protein 46, RLP46, receptor like protein 46 0.548 -0.343
36 266761_at AT2G47130 AtSDR3, SDR3, short-chain dehydrogenase/reductase 2 0.548 -3.035
37 259211_at AT3G09020 [alpha 1,4-glycosyltransferase family protein] 0.545 -1.659
38 248321_at AT5G52740 [Copper transport protein family] 0.543 -4.189
39 254093_at AT4G25110 AtMC2, metacaspase 2, AtMCP1c, metacaspase 1c, MC2, metacaspase 2, MCP1c, metacaspase 1c 0.541 -4.851
40 265993_at AT2G24160 [pseudogene] 0.541 -1.107
41 254500_at AT4G20110 BP80-3;1, binding protein of 80 kDa 3;1, VSR3;1, VACUOLAR SORTING RECEPTOR 3;1, VSR7, VACUOLAR SORTING RECEPTOR 7 0.530 1.679
42 257382_at AT2G40750 ATWRKY54, WRKY DNA-BINDING PROTEIN 54, WRKY54, WRKY DNA-binding protein 54 0.527 -4.919
43 252862_at AT4G39830 [Cupredoxin superfamily protein] 0.525 -4.728
44 257100_at AT3G25010 AtRLP41, receptor like protein 41, RLP41, receptor like protein 41 0.521 -3.081
45 246988_at AT5G67340 [ARM repeat superfamily protein] 0.505 -1.438
46 259489_at AT1G15790 unknown 0.501 0.268
47 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.495 0.504
48 266247_at AT2G27660 [Cysteine/Histidine-rich C1 domain family protein] 0.495 -4.732
49 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] 0.493 -2.545
50 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 0.490 -7.175
51 248971_at AT5G45000 [Disease resistance protein (TIR-NBS-LRR class) family] 0.490 -3.212
52 254660_at AT4G18250 [receptor serine/threonine kinase, putative] 0.488 -7.189
53 264866_at AT1G24140 [Matrixin family protein] 0.485 -2.981
54 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.476 -3.853
55 264434_at AT1G10340 [Ankyrin repeat family protein] 0.474 -1.326
56 265161_at AT1G30900 BP80-3;3, binding protein of 80 kDa 3;3, VSR3;3, VACUOLAR SORTING RECEPTOR 3;3, VSR6, VACUOLAR SORTING RECEPTOR 6 0.473 -5.298
57 257535_at AT3G09490 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.469 -0.719
58 251884_at AT3G54150 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.466 -1.890
59 247071_at AT5G66640 DAR3, DA1-related protein 3 0.462 -1.374
60 266782_at AT2G29120 ATGLR2.7, glutamate receptor 2.7, GLR2.7, GLUTAMATE RECEPTOR 2.7, GLR2.7, glutamate receptor 2.7 0.444 -3.281
61 252825_at AT4G39890 AtRABH1c, RAB GTPase homolog H1C, RABH1c, RAB GTPase homolog H1C 0.443 -1.142
62 260419_at AT1G69730 [Wall-associated kinase family protein] 0.441 -4.005
63 248330_at AT5G52810 [NAD(P)-binding Rossmann-fold superfamily protein] 0.440 -5.144
64 263852_at AT2G04450 ATNUDT6, nudix hydrolase homolog 6, ATNUDX6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, NUDT6, nudix hydrolase homolog 6, NUDX6, nucleoside diphosphates linked to some moiety X 6 0.438 -5.729
65 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 0.438 -6.460
66 264867_at AT1G24150 ATFH4, FORMIN HOMOLOGUE 4, FH4, formin homologue 4 0.438 -2.732
67 255595_at AT4G01700 [Chitinase family protein] 0.431 -2.190
68 260396_at AT1G69720 HO3, heme oxygenase 3 0.429 -1.612
69 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.429 -5.143
70 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 0.427 -0.159
71 249896_at AT5G22530 unknown 0.426 -4.636
72 249639_at AT5G36930 [Disease resistance protein (TIR-NBS-LRR class) family] 0.425 -3.232
73 250062_at AT5G17760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.419 -2.242
74 250796_at AT5G05300 unknown 0.413 -4.381
75 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 0.412 -7.145
76 258063_at AT3G14620 CYP72A8, cytochrome P450, family 72, subfamily A, polypeptide 8 0.409 -0.402
77 249197_at AT5G42380 CML37, calmodulin like 37 0.400 -6.670
78 255630_at AT4G00700 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] 0.399 -3.863
79 247314_at AT5G64000 ATSAL2, SAL2 0.399 -3.036
80 259560_at AT1G21270 WAK2, wall-associated kinase 2 0.398 -4.565
81 267123_at AT2G23560 ATMES7, ARABIDOPSIS THALIANA METHYL ESTERASE 7, MES7, methyl esterase 7 -0.406 -2.485
82 254024_at AT4G25780 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.329 -3.159
83 249069_at AT5G44010 unknown -0.323 2.903
84 260655_at AT1G19320 [Pathogenesis-related thaumatin superfamily protein] -0.318 -1.167
85 266946_at AT2G18890 [Protein kinase superfamily protein] -0.277 -4.145
86 267036_at AT2G38465 unknown -0.272 6.603
87 251402_at AT3G60290 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.270 -2.785
88 250751_at AT5G05890 [UDP-Glycosyltransferase superfamily protein] -0.264 0.921
89 253811_at AT4G28190 ULT, ULTRAPETALA, ULT1, ULTRAPETALA1 -0.257 -2.075
90 249797_at AT5G23750 [Remorin family protein] -0.251 1.517
91 246483_at AT5G16000 AtNIK1, NIK1, NSP-interacting kinase 1 -0.224 -0.815
92 266278_at AT2G29300 [NAD(P)-binding Rossmann-fold superfamily protein] -0.214 -3.162
93 267013_at AT2G39180 ATCRR2, CCR2, CRINKLY4 related 2 -0.208 -1.798
94 245657_at AT1G56720 [Protein kinase superfamily protein] -0.199 -4.811
95 259586_at AT1G28100 unknown -0.198 1.281
96 255943_at AT1G22370 AtUGT85A5, UDP-glucosyl transferase 85A5, UGT85A5, UDP-glucosyl transferase 85A5 -0.192 3.563
97 244934_at ATCG01080 NDHG -0.191 -0.345
98 246432_at AT5G17490 AtRGL3, RGL3, RGA-like protein 3 -0.184 2.620
99 259021_at AT3G07540 [Actin-binding FH2 (formin homology 2) family protein] -0.182 -2.853
100 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.172 0.260
101 260753_at AT1G49230 AtATL78, ATL78, Arabidopsis T?xicos en Levadura 78 -0.169 1.471
102 260930_at AT1G02620 [Ras-related small GTP-binding family protein] -0.164 5.341
103 245305_at AT4G17215 [Pollen Ole e 1 allergen and extensin family protein] -0.161 1.985
104 247625_at AT5G60200 TMO6, TARGET OF MONOPTEROS 6 -0.157 -2.631
105 259774_at AT1G29520 [AWPM-19-like family protein] -0.156 -3.930
106 255779_at AT1G18650 PDCB3, plasmodesmata callose-binding protein 3 -0.155 -1.105
107 256626_at AT3G20015 [Eukaryotic aspartyl protease family protein] -0.155 -1.449
108 262060_at AT1G80170 [Pectin lyase-like superfamily protein] -0.154 -1.453
109 258700_at AT3G09710 IQD1, IQ-domain 1 -0.153 1.194
110 252167_at AT3G50560 [NAD(P)-binding Rossmann-fold superfamily protein] -0.153 -0.545
111 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.153 -0.695
112 258409_at AT3G17640 [Leucine-rich repeat (LRR) family protein] -0.152 -5.046
113 252949_at AT4G38670 [Pathogenesis-related thaumatin superfamily protein] -0.151 -2.203
114 260982_at AT1G53520 AtFAP3, FAP3, fatty-acid-binding protein 3 -0.150 -6.510
115 249290_at AT5G41060 [DHHC-type zinc finger family protein] -0.150 -0.898
116 253583_at AT4G30680 [Initiation factor eIF-4 gamma, MA3] -0.150 -0.120
117 265331_at AT2G18420 [Gibberellin-regulated family protein] -0.149 0.051
118 260033_at AT1G68760 ATNUDT1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, ATNUDX1, nudix hydrolase 1, NUDX1, nudix hydrolase 1, NUDX1, NUDIX HYDROLASE 1 -0.149 -0.594
119 245015_at ATCG00490 RBCL -0.149 -0.504
120 257672_at AT3G20300 unknown -0.148 1.913
121 253317_at AT4G33960 unknown -0.147 -1.198
122 256192_at AT1G30110 ATNUDX25, nudix hydrolase homolog 25, NUDX25, nudix hydrolase homolog 25 -0.144 -0.313
123 253966_at AT4G26520 AtFBA7, FBA7, fructose-bisphosphate aldolase 7 -0.144 -6.356
124 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.143 -0.743
125 245980_at AT5G13140 [Pollen Ole e 1 allergen and extensin family protein] -0.137 -4.253
126 247278_at AT5G64380 [Inositol monophosphatase family protein] -0.136 -0.163
127 250372_at AT5G11460 unknown -0.135 -1.295
128 250730_at AT5G06490 [RING/U-box superfamily protein] -0.135 0.051
129 247189_at AT5G65390 AGP7, arabinogalactan protein 7 -0.135 0.221
130 245130_at AT2G45340 [Leucine-rich repeat protein kinase family protein] -0.132 1.028
131 262245_at AT1G48240 ATNPSN12, NPSN12, novel plant snare 12 -0.132 -0.766
132 265024_at AT1G24600 unknown -0.131 2.457
133 265985_at AT2G24220 ATPUP5, purine permease 5, PUP5, purine permease 5 -0.128 0.424
134 254545_at AT4G19830 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] -0.128 -1.763
135 253021_at AT4G38050 [Xanthine/uracil permease family protein] -0.128 -0.738
136 259738_at AT1G64355 unknown -0.127 0.301
137 262496_at AT1G21790 [TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein] -0.127 0.776
138 258676_at AT3G08600 unknown -0.126 -1.790
139 246891_at AT5G25490 [Ran BP2/NZF zinc finger-like superfamily protein] -0.125 -1.661
140 248975_at AT5G45040 CYTC6A, cytochrome c6A -0.124 0.043
141 264222_at AT1G60230 [Radical SAM superfamily protein] -0.123 -1.099
142 257197_at AT3G23800 SBP3, selenium-binding protein 3 -0.123 0.051
143 257598_at AT3G24800 PRT1, proteolysis 1 -0.122 0.198
144 261791_at AT1G16170 unknown -0.120 -2.262
145 258704_at AT3G09780 ATCRR1, CCR1, CRINKLY4 related 1 -0.118 -4.228
146 262965_at AT1G54310 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.118 -0.351
147 258183_at AT3G21550 AtDMP2, Arabidopsis thaliana DUF679 domain membrane protein 2, DMP2, DUF679 domain membrane protein 2 -0.118 -4.233
148 258091_at AT3G14560 unknown -0.117 -0.025
149 248140_at AT5G54980 [Uncharacterised protein family (UPF0497)] -0.117 0.546
150 256564_at AT3G29770 ATMES11, ARABIDOPSIS THALIANA METHYL ESTERASE 11, MES11, methyl esterase 11 -0.116 -0.617
151 245632_at AT1G25290 ATRBL10, RHOMBOID-like protein 10, ATRBL7, RHOMBOID-like protein 7, AtRBL8, RBL10, RHOMBOID-like protein 10, RBL8, RHOMBOID-like protein 8 -0.116 -1.794
152 259179_at AT3G01660 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.116 -0.303
153 257951_at AT3G21700 ATSGP2, SGP2 -0.115 -0.921
154 256653_at AT3G18870 [Mitochondrial transcription termination factor family protein] -0.115 0.429
155 256613_at AT3G29290 emb2076, embryo defective 2076 -0.113 -2.285
156 256599_at AT3G14760 unknown -0.113 -4.747
157 254853_at AT4G12080 AHL1, AT-hook motif nuclear-localized protein 1, ATAHL1 -0.113 2.599
158 257267_at AT3G15030 MEE35, maternal effect embryo arrest 35, TCP4, TCP family transcription factor 4 -0.113 -1.035
159 246689_at AT5G34460 unknown -0.112 0.051
160 262162_at AT1G78020 unknown -0.111 -0.117