4.0:Information of module
Col-0 DCA 48h
In comparison with Dark 1day ivd help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0002376 immune system process BP 2.593e-88
GO:0006952 defense response BP 1.678e-82
GO:0009814 defense response, incompatible interacti... BP 6.337e-81
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006084 acetyl-CoA metabolic process BP 2.047e-07
GO:0006790 sulfur compound metabolic process BP 3.608e-07
GO:0006637 acyl-CoA metabolic process BP 4.903e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 DCA 48h		 Log2 signal ratio
Dark 1day ivd
1 258947_at AT3G01830 [Calcium-binding EF-hand family protein] 0.807 -5.536
2 254255_at AT4G23220 CRK14, cysteine-rich RLK (RECEPTOR-like protein kinase) 14 0.744 -1.842
3 259428_at AT1G01560 ATMPK11, MAP kinase 11, MPK11, MAP kinase 11 0.706 -3.100
4 247684_at AT5G59670 [Leucine-rich repeat protein kinase family protein] 0.691 -2.534
5 248322_at AT5G52760 [Copper transport protein family] 0.665 -3.354
6 252346_at AT3G48650 [pseudogene] 0.634 -1.217
7 249940_at AT5G22380 anac090, NAC domain containing protein 90, NAC090, NAC domain containing protein 90 0.615 -6.197
8 263565_at AT2G15390 atfut4, FUT4, fucosyltransferase 4 0.562 -1.317
9 256576_at AT3G28210 PMZ, SAP12, STRESS-ASSOCIATED PROTEIN 12 0.558 -3.131
10 249197_at AT5G42380 CML37, calmodulin like 37 0.549 -4.970
11 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 0.549 -2.742
12 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 0.537 -1.179
13 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase 0.535 -0.063
14 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 0.531 -1.423
15 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.524 -1.316
16 254408_at AT4G21390 B120 0.522 -0.665
17 247602_at AT5G60900 RLK1, receptor-like protein kinase 1 0.514 -0.658
18 261339_at AT1G35710 [Protein kinase family protein with leucine-rich repeat domain] 0.513 0.523
19 254869_at AT4G11890 ARCK1, ABA- AND OSMOTIC-STRESS-INDUCIBLE RECEPTOR-LIKE CYTOSOLIC KINASE1, CRK45, cysteine-rich receptor-like protein kinase 45 0.504 -2.611
20 248169_at AT5G54610 ANK, ankyrin, BDA1, bian da 2 (becoming big in Chinese) 0.504 -2.492
21 252345_at AT3G48640 unknown 0.498 -3.650
22 254241_at AT4G23190 AT-RLK3, RECEPTOR LIKE PROTEIN KINASE 3, CRK11, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 0.492 -1.100
23 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.490 -0.816
24 252060_at AT3G52430 ATPAD4, ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, PAD4, PHYTOALEXIN DEFICIENT 4 0.488 -2.241
25 247848_at AT5G58120 [Disease resistance protein (TIR-NBS-LRR class) family] 0.483 -0.755
26 252403_at AT3G48080 [alpha/beta-Hydrolases superfamily protein] 0.481 -0.002
27 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 0.476 -3.154
28 259211_at AT3G09020 [alpha 1,4-glycosyltransferase family protein] 0.473 -0.665
29 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.472 -3.178
30 259561_at AT1G21250 AtWAK1, PRO25, WAK1, cell wall-associated kinase 1 0.471 -1.561
31 257382_at AT2G40750 ATWRKY54, WRKY DNA-BINDING PROTEIN 54, WRKY54, WRKY DNA-binding protein 54 0.470 -1.601
32 251884_at AT3G54150 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.469 -2.021
33 253181_at AT4G35180 LHT7, LYS/HIS transporter 7 0.467 -5.505
34 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.463 -3.077
35 260904_at AT1G02450 NIMIN-1, NIMIN1, NIM1-interacting 1 0.461 -3.193
36 265618_at AT2G25460 unknown 0.460 1.292
37 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 0.452 -4.155
38 255654_at AT4G00970 CRK41, cysteine-rich RLK (RECEPTOR-like protein kinase) 41 0.452 -2.674
39 266247_at AT2G27660 [Cysteine/Histidine-rich C1 domain family protein] 0.451 -2.153
40 247071_at AT5G66640 DAR3, DA1-related protein 3 0.448 0.009
41 262381_at AT1G72900 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.446 0.526
42 258063_at AT3G14620 CYP72A8, cytochrome P450, family 72, subfamily A, polypeptide 8 0.441 -1.382
43 260419_at AT1G69730 [Wall-associated kinase family protein] 0.439 -1.140
44 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] 0.431 -3.409
45 264866_at AT1G24140 [Matrixin family protein] 0.426 -2.537
46 252862_at AT4G39830 [Cupredoxin superfamily protein] 0.423 -2.927
47 254870_at AT4G11900 [S-locus lectin protein kinase family protein] 0.421 -0.015
48 265597_at AT2G20142 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.419 -1.331
49 252825_at AT4G39890 AtRABH1c, RAB GTPase homolog H1C, RABH1c, RAB GTPase homolog H1C 0.418 -0.487
50 255595_at AT4G01700 [Chitinase family protein] 0.418 -1.466
51 265917_at AT2G15080 AtRLP19, receptor like protein 19, RLP19, receptor like protein 19 0.413 1.007
52 249639_at AT5G36930 [Disease resistance protein (TIR-NBS-LRR class) family] 0.408 -1.161
53 250445_at AT5G10760 [Eukaryotic aspartyl protease family protein] 0.407 -1.641
54 266782_at AT2G29120 ATGLR2.7, glutamate receptor 2.7, GLR2.7, GLUTAMATE RECEPTOR 2.7, GLR2.7, glutamate receptor 2.7 0.405 -1.818
55 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 0.403 -1.881
56 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 0.399 -0.635
57 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] 0.396 -0.836
58 256366_at AT1G66880 [Protein kinase superfamily protein] 0.395 -0.181
59 250796_at AT5G05300 unknown 0.394 -3.267
60 245755_at AT1G35210 unknown 0.390 -2.969
61 262507_at AT1G11330 [S-locus lectin protein kinase family protein] 0.390 -0.287
62 247554_at AT5G61010 ATEXO70E2, exocyst subunit exo70 family protein E2, EXO70E2, exocyst subunit exo70 family protein E2 0.383 0.325
63 260239_at AT1G74360 [Leucine-rich repeat protein kinase family protein] 0.373 -0.995
64 259850_at AT1G72240 unknown 0.371 -3.672
65 261443_at AT1G28480 GRX480, roxy19 0.370 0.586
66 267546_at AT2G32680 AtRLP23, receptor like protein 23, RLP23, receptor like protein 23 0.370 -1.668
67 260735_at AT1G17610 CHS1, CHILLING SENSITIVE 1 0.368 -2.275
68 264851_at AT2G17290 ATCDPK3, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, ATCPK6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, CPK6, calcium dependent protein kinase 6 0.367 0.155
69 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.366 -1.525
70 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 0.363 -3.407
71 257919_at AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 0.355 -1.532
72 254500_at AT4G20110 BP80-3;1, binding protein of 80 kDa 3;1, VSR3;1, VACUOLAR SORTING RECEPTOR 3;1, VSR7, VACUOLAR SORTING RECEPTOR 7 0.355 1.545
73 246993_at AT5G67450 AZF1, zinc-finger protein 1, ZF1, zinc-finger protein 1 0.354 -1.465
74 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 0.351 -0.562
75 249485_at AT5G39020 [Malectin/receptor-like protein kinase family protein] 0.349 -0.478
76 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.349 -4.746
77 259560_at AT1G21270 WAK2, wall-associated kinase 2 0.348 -1.870
78 259385_at AT1G13470 unknown 0.346 -3.905
79 248330_at AT5G52810 [NAD(P)-binding Rossmann-fold superfamily protein] 0.344 -4.191
80 257535_at AT3G09490 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.343 -0.528
81 246988_at AT5G67340 [ARM repeat superfamily protein] 0.343 -1.249
82 254266_at AT4G23130 CRK5, cysteine-rich RLK (RECEPTOR-like protein kinase) 5, RLK6, RECEPTOR-LIKE PROTEIN KINASE 6 0.341 -1.933
83 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 0.341 -1.348
84 260734_at AT1G17600 [Disease resistance protein (TIR-NBS-LRR class) family] 0.339 -1.993
85 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] 0.338 -4.019
86 259320_at AT3G01080 ATWRKY58, WRKY DNA-BINDING PROTEIN 58, WRKY58, WRKY DNA-binding protein 58 0.329 -0.876
87 246293_at AT3G56710 SIB1, sigma factor binding protein 1 0.327 -1.388
88 264958_at AT1G76960 unknown 0.327 -2.922
89 254032_at AT4G25940 [ENTH/ANTH/VHS superfamily protein] 0.322 -1.028
90 263202_at AT1G05630 5PTASE13, inositol-polyphosphate 5-phosphatase 13, AT5PTASE13, Arabidopsis thaliana inositol-polyphosphate 5-phosphatase 13 0.322 -1.918
91 248821_at AT5G47070 [Protein kinase superfamily protein] 0.318 0.226
92 252470_at AT3G46930 [Protein kinase superfamily protein] 0.317 -0.182
93 259852_at AT1G72280 AERO1, endoplasmic reticulum oxidoreductins 1, ERO1, endoplasmic reticulum oxidoreductins 1 0.316 -3.873
94 255923_at AT1G22180 [Sec14p-like phosphatidylinositol transfer family protein] 0.315 -0.876
95 260396_at AT1G69720 HO3, heme oxygenase 3 0.314 -0.674
96 258351_at AT3G17700 ATCNGC20, CYCLIC NUCLEOTIDE-GATED CHANNEL 20, CNBT1, cyclic nucleotide-binding transporter 1, CNGC20, cyclic nucleotide gated channel 20 0.310 0.686
97 249527_at AT5G38710 [Methylenetetrahydrofolate reductase family protein] 0.310 -0.389
98 258682_at AT3G08720 ATPK19, Arabidopsis thaliana protein kinase 19, ATPK2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, ATS6K2, ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, S6K2, serine/threonine protein kinase 2 0.303 2.448
99 258787_at AT3G11840 PUB24, plant U-box 24 0.302 -1.198
100 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 0.301 -2.163
101 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G 0.299 0.156
102 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.484 5.262
103 246251_at AT4G37220 [Cold acclimation protein WCOR413 family] -0.437 6.590
104 250860_at AT5G04770 ATCAT6, ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, CAT6, cationic amino acid transporter 6 -0.299 0.652
105 267123_at AT2G23560 ATMES7, ARABIDOPSIS THALIANA METHYL ESTERASE 7, MES7, methyl esterase 7 -0.263 -1.626
106 251084_at AT5G01520 AIRP2, ABA Insensitive RING Protein 2, AtAIRP2 -0.257 3.315
107 262760_at AT1G10770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.251 -0.842
108 265265_at AT2G42900 [Plant basic secretory protein (BSP) family protein] -0.233 0.910
109 249797_at AT5G23750 [Remorin family protein] -0.232 1.667
110 251141_at AT5G01075 [Glycosyl hydrolase family 35 protein] -0.230 -1.080
111 246432_at AT5G17490 AtRGL3, RGL3, RGA-like protein 3 -0.228 2.771
112 259103_at AT3G11690 unknown -0.212 2.572
113 250408_at AT5G10930 CIPK5, CBL-interacting protein kinase 5, SnRK3.24, SNF1-RELATED PROTEIN KINASE 3.24 -0.212 -0.613
114 246797_at AT5G26790 unknown -0.202 -2.161
115 250751_at AT5G05890 [UDP-Glycosyltransferase superfamily protein] -0.197 1.554
116 262598_at AT1G15260 unknown -0.197 -1.032
117 261941_at AT1G22490 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.196 1.256
118 266845_at AT2G26110 unknown -0.194 0.719
119 260353_at AT1G69230 SP1L2, SPIRAL1-like2 -0.189 1.017
120 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.187 -0.305
121 262421_at AT1G50290 unknown -0.181 1.115
122 251320_at AT3G61530 PANB2 -0.181 -0.076
123 260989_at AT1G53450 unknown -0.175 1.232
124 245243_at AT1G44414 unknown -0.175 2.210
125 263124_at AT1G78480 [Prenyltransferase family protein] -0.175 1.097
126 259801_at AT1G72230 [Cupredoxin superfamily protein] -0.173 0.216
127 254024_at AT4G25780 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.173 -1.564
128 258943_at AT3G10400 U11/U12-31K, U11/U12-31K -0.171 -0.014
129 247965_at AT5G56540 AGP14, arabinogalactan protein 14, ATAGP14 -0.171 0.049
130 264860_at AT1G24290 [AAA-type ATPase family protein] -0.170 -1.529
131 256813_at AT3G21360 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.170 0.405
132 253667_at AT4G30170 [Peroxidase family protein] -0.167 -0.305
133 253877_at AT4G27435 unknown -0.164 -0.353
134 261681_at AT1G47340 [F-box and associated interaction domains-containing protein] -0.159 -0.133
135 251009_at AT5G02640 unknown -0.159 0.491
136 262831_at AT1G14730 [Cytochrome b561/ferric reductase transmembrane protein family] -0.157 0.658
137 247992_at AT5G56520 unknown -0.157 3.850
138 255342_at AT4G04510 CRK38, cysteine-rich RLK (RECEPTOR-like protein kinase) 38 -0.155 -4.388
139 258183_at AT3G21550 AtDMP2, Arabidopsis thaliana DUF679 domain membrane protein 2, DMP2, DUF679 domain membrane protein 2 -0.153 -1.037
140 251297_at AT3G62020 GLP10, germin-like protein 10 -0.152 -1.597
141 265985_at AT2G24220 ATPUP5, purine permease 5, PUP5, purine permease 5 -0.152 0.987
142 246387_at AT1G77400 unknown -0.151 -0.589
143 251402_at AT3G60290 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.150 -2.013
144 247882_at AT5G57785 unknown -0.149 2.881
145 253811_at AT4G28190 ULT, ULTRAPETALA, ULT1, ULTRAPETALA1 -0.148 -0.687
146 258091_at AT3G14560 unknown -0.144 0.065
147 259463_at AT1G18950 [DDT domain superfamily] -0.143 0.699
148 250089_at AT5G17320 HDG9, homeodomain GLABROUS 9 -0.143 -0.305
149 245386_at AT4G14010 RALFL32, ralf-like 32 -0.142 0.560
150 253317_at AT4G33960 unknown -0.142 -0.928
151 251856_at AT3G54720 AMP1, ALTERED MERISTEM PROGRAM 1, AtAMP1, COP2, CONSTITUTIVE MORPHOGENESIS 2, HPT, HAUPTLING, MFO1, Multifolia, PT, PRIMORDIA TIMING -0.142 1.045
152 259021_at AT3G07540 [Actin-binding FH2 (formin homology 2) family protein] -0.140 -0.722
153 259023_at AT3G07510 unknown -0.138 0.727
154 262055_at AT1G79970 unknown -0.137 0.726
155 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 -0.137 3.597
156 261323_at AT1G44760 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.135 1.154
157 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 -0.135 -0.154
158 257573_at AT2G33990 iqd9, IQ-domain 9 -0.134 2.419
159 260264_at AT1G68500 unknown -0.133 1.946
160 245363_at AT4G15120 [VQ motif-containing protein] -0.133 0.480
161 260033_at AT1G68760 ATNUDT1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, ATNUDX1, nudix hydrolase 1, NUDX1, nudix hydrolase 1, NUDX1, NUDIX HYDROLASE 1 -0.133 -0.185
162 266506_at AT2G47850 [Zinc finger C-x8-C-x5-C-x3-H type family protein] -0.131 1.361
163 258704_at AT3G09780 ATCRR1, CCR1, CRINKLY4 related 1 -0.131 -1.293
164 264744_at AT1G62050 [Ankyrin repeat family protein] -0.130 -0.306
165 248614_at AT5G49560 [Putative methyltransferase family protein] -0.130 -2.208
166 251964_at AT3G53370 [S1FA-like DNA-binding protein] -0.129 -0.219
167 257712_at AT3G27420 unknown -0.128 1.000
168 250120_at AT5G16490 RIC4, ROP-interactive CRIB motif-containing protein 4 -0.127 -0.598
169 245994_at AT5G20760 unknown -0.127 -0.305
170 254249_at AT4G23280 CRK20, cysteine-rich RLK (RECEPTOR-like protein kinase) 20 -0.125 -2.232
171 260930_at AT1G02620 [Ras-related small GTP-binding family protein] -0.125 5.287
172 248167_at AT5G54530 unknown -0.124 0.680
173 245208_at AT5G12330 LRP1, LATERAL ROOT PRIMORDIUM 1 -0.124 -0.305
174 252949_at AT4G38670 [Pathogenesis-related thaumatin superfamily protein] -0.124 -1.068
175 262700_at AT1G76020 [Thioredoxin superfamily protein] -0.123 0.914
176 249645_at AT5G36910 THI2.2, thionin 2.2 -0.123 -3.726
177 254853_at AT4G12080 AHL1, AT-hook motif nuclear-localized protein 1, ATAHL1 -0.123 2.430
178 251356_at AT3G61060 AtPP2-A13, phloem protein 2-A13, PP2-A13, phloem protein 2-A13 -0.123 4.321
179 250734_at AT5G06270 unknown -0.122 -1.009
180 247278_at AT5G64380 [Inositol monophosphatase family protein] -0.122 0.247
181 245138_at AT2G45190 AFO, ABNORMAL FLORAL ORGANS, FIL, FILAMENTOUS FLOWER, YAB1, YABBY1 -0.121 -0.445
182 247123_at AT5G66050 [Wound-responsive family protein] -0.121 2.108
183 249958_at AT5G18970 [AWPM-19-like family protein] -0.121 -0.263
184 251330_at AT3G61550 [RING/U-box superfamily protein] -0.121 -1.466
185 267266_at AT2G23150 ATNRAMP3, NRAMP3, natural resistance-associated macrophage protein 3 -0.120 0.405
186 248975_at AT5G45040 CYTC6A, cytochrome c6A -0.120 0.469
187 252412_at AT3G47295 unknown -0.118 0.953
188 259934_at AT1G71340 AtGDPD4, GDPD4, glycerophosphodiester phosphodiesterase 4 -0.118 0.117
189 259881_at AT1G76820 [eukaryotic translation initiation factor 2 (eIF-2) family protein] -0.118 2.320
190 263729_at AT1G60080 [3'-5'-exoribonuclease family protein] -0.118 -0.229
191 258209_at AT3G14060 unknown -0.117 2.048
192 255509_at AT4G02210 unknown -0.116 0.870
193 255427_at AT4G03380 unknown -0.115 1.156
194 267598_at AT2G33010 [Ubiquitin-associated (UBA) protein] -0.115 -0.305
195 252210_at AT3G50410 OBP1, OBF binding protein 1 -0.114 -0.185
196 255779_at AT1G18650 PDCB3, plasmodesmata callose-binding protein 3 -0.114 -0.037
197 247715_at AT5G59360 unknown -0.114 -1.331
198 254235_at AT4G23750 CRF2, cytokinin response factor 2, TMO3, TARGET OF MONOPTEROS 3 -0.114 0.173
199 257823_at AT3G25190 [Vacuolar iron transporter (VIT) family protein] -0.113 2.343
200 246510_at AT5G15410 ATCNGC2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, CNGC2, CYCLIC NUCLEOTIDE GATED CHANNEL 2, DND1, DEFENSE NO DEATH 1 -0.113 0.959
201 251976_at AT3G53240 AtRLP45, receptor like protein 45, RLP45, receptor like protein 45 -0.113 -0.593