4.0:Information of module
Col-0 DCA 48h
In comparison with mbd6 mutant thaliana 10-day-old seedling help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0002376 immune system process BP 2.593e-88
GO:0006952 defense response BP 1.678e-82
GO:0009814 defense response, incompatible interacti... BP 6.337e-81
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006084 acetyl-CoA metabolic process BP 2.047e-07
GO:0006790 sulfur compound metabolic process BP 3.608e-07
GO:0006637 acyl-CoA metabolic process BP 4.903e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 DCA 48h		 Log2 signal ratio
mbd6 mutant thaliana 10-day-old seedling
1 258947_at AT3G01830 [Calcium-binding EF-hand family protein] 0.807 0.183
2 254255_at AT4G23220 CRK14, cysteine-rich RLK (RECEPTOR-like protein kinase) 14 0.744 0.402
3 259428_at AT1G01560 ATMPK11, MAP kinase 11, MPK11, MAP kinase 11 0.706 0.182
4 247684_at AT5G59670 [Leucine-rich repeat protein kinase family protein] 0.691 0.188
5 248322_at AT5G52760 [Copper transport protein family] 0.665 0.418
6 252346_at AT3G48650 [pseudogene] 0.634 0.168
7 249940_at AT5G22380 anac090, NAC domain containing protein 90, NAC090, NAC domain containing protein 90 0.615 0.056
8 263565_at AT2G15390 atfut4, FUT4, fucosyltransferase 4 0.562 0.245
9 256576_at AT3G28210 PMZ, SAP12, STRESS-ASSOCIATED PROTEIN 12 0.558 0.205
10 249197_at AT5G42380 CML37, calmodulin like 37 0.549 0.205
11 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 0.549 0.092
12 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 0.537 0.015
13 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase 0.535 0.287
14 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 0.531 0.244
15 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.524 0.113
16 254408_at AT4G21390 B120 0.522 0.127
17 247602_at AT5G60900 RLK1, receptor-like protein kinase 1 0.514 0.018
18 261339_at AT1G35710 [Protein kinase family protein with leucine-rich repeat domain] 0.513 0.292
19 254869_at AT4G11890 ARCK1, ABA- AND OSMOTIC-STRESS-INDUCIBLE RECEPTOR-LIKE CYTOSOLIC KINASE1, CRK45, cysteine-rich receptor-like protein kinase 45 0.504 0.016
20 248169_at AT5G54610 ANK, ankyrin, BDA1, bian da 2 (becoming big in Chinese) 0.504 -0.031
21 252345_at AT3G48640 unknown 0.498 -0.032
22 254241_at AT4G23190 AT-RLK3, RECEPTOR LIKE PROTEIN KINASE 3, CRK11, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 0.492 0.142
23 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.490 0.082
24 252060_at AT3G52430 ATPAD4, ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, PAD4, PHYTOALEXIN DEFICIENT 4 0.488 0.223
25 247848_at AT5G58120 [Disease resistance protein (TIR-NBS-LRR class) family] 0.483 -0.116
26 252403_at AT3G48080 [alpha/beta-Hydrolases superfamily protein] 0.481 0.219
27 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 0.476 0.094
28 259211_at AT3G09020 [alpha 1,4-glycosyltransferase family protein] 0.473 0.287
29 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.472 0.439
30 259561_at AT1G21250 AtWAK1, PRO25, WAK1, cell wall-associated kinase 1 0.471 0.260
31 257382_at AT2G40750 ATWRKY54, WRKY DNA-BINDING PROTEIN 54, WRKY54, WRKY DNA-binding protein 54 0.470 0.383
32 251884_at AT3G54150 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.469 0.380
33 253181_at AT4G35180 LHT7, LYS/HIS transporter 7 0.467 0.053
34 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.463 0.094
35 260904_at AT1G02450 NIMIN-1, NIMIN1, NIM1-interacting 1 0.461 0.066
36 265618_at AT2G25460 unknown 0.460 0.088
37 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 0.452 0.134
38 255654_at AT4G00970 CRK41, cysteine-rich RLK (RECEPTOR-like protein kinase) 41 0.452 0.054
39 266247_at AT2G27660 [Cysteine/Histidine-rich C1 domain family protein] 0.451 0.051
40 247071_at AT5G66640 DAR3, DA1-related protein 3 0.448 0.263
41 262381_at AT1G72900 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.446 0.178
42 258063_at AT3G14620 CYP72A8, cytochrome P450, family 72, subfamily A, polypeptide 8 0.441 0.174
43 260419_at AT1G69730 [Wall-associated kinase family protein] 0.439 0.027
44 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] 0.431 0.160
45 264866_at AT1G24140 [Matrixin family protein] 0.426 0.247
46 252862_at AT4G39830 [Cupredoxin superfamily protein] 0.423 0.010
47 254870_at AT4G11900 [S-locus lectin protein kinase family protein] 0.421 -0.063
48 265597_at AT2G20142 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.419 0.262
49 252825_at AT4G39890 AtRABH1c, RAB GTPase homolog H1C, RABH1c, RAB GTPase homolog H1C 0.418 0.186
50 255595_at AT4G01700 [Chitinase family protein] 0.418 0.288
51 265917_at AT2G15080 AtRLP19, receptor like protein 19, RLP19, receptor like protein 19 0.413 -0.009
52 249639_at AT5G36930 [Disease resistance protein (TIR-NBS-LRR class) family] 0.408 0.011
53 250445_at AT5G10760 [Eukaryotic aspartyl protease family protein] 0.407 0.166
54 266782_at AT2G29120 ATGLR2.7, glutamate receptor 2.7, GLR2.7, GLUTAMATE RECEPTOR 2.7, GLR2.7, glutamate receptor 2.7 0.405 -0.063
55 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 0.403 -0.120
56 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 0.399 0.616
57 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] 0.396 0.317
58 256366_at AT1G66880 [Protein kinase superfamily protein] 0.395 0.129
59 250796_at AT5G05300 unknown 0.394 0.042
60 245755_at AT1G35210 unknown 0.390 0.207
61 262507_at AT1G11330 [S-locus lectin protein kinase family protein] 0.390 0.153
62 247554_at AT5G61010 ATEXO70E2, exocyst subunit exo70 family protein E2, EXO70E2, exocyst subunit exo70 family protein E2 0.383 0.086
63 260239_at AT1G74360 [Leucine-rich repeat protein kinase family protein] 0.373 0.117
64 259850_at AT1G72240 unknown 0.371 -0.021
65 261443_at AT1G28480 GRX480, roxy19 0.370 0.246
66 267546_at AT2G32680 AtRLP23, receptor like protein 23, RLP23, receptor like protein 23 0.370 0.056
67 260735_at AT1G17610 CHS1, CHILLING SENSITIVE 1 0.368 0.017
68 264851_at AT2G17290 ATCDPK3, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, ATCPK6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, CPK6, calcium dependent protein kinase 6 0.367 0.131
69 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.366 0.095
70 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 0.363 0.149
71 257919_at AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 0.355 0.234
72 254500_at AT4G20110 BP80-3;1, binding protein of 80 kDa 3;1, VSR3;1, VACUOLAR SORTING RECEPTOR 3;1, VSR7, VACUOLAR SORTING RECEPTOR 7 0.355 0.148
73 246993_at AT5G67450 AZF1, zinc-finger protein 1, ZF1, zinc-finger protein 1 0.354 0.198
74 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 0.351 -0.119
75 249485_at AT5G39020 [Malectin/receptor-like protein kinase family protein] 0.349 0.079
76 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.349 0.276
77 259560_at AT1G21270 WAK2, wall-associated kinase 2 0.348 0.293
78 259385_at AT1G13470 unknown 0.346 0.258
79 248330_at AT5G52810 [NAD(P)-binding Rossmann-fold superfamily protein] 0.344 0.082
80 257535_at AT3G09490 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.343 0.156
81 246988_at AT5G67340 [ARM repeat superfamily protein] 0.343 0.144
82 254266_at AT4G23130 CRK5, cysteine-rich RLK (RECEPTOR-like protein kinase) 5, RLK6, RECEPTOR-LIKE PROTEIN KINASE 6 0.341 0.143
83 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 0.341 0.221
84 260734_at AT1G17600 [Disease resistance protein (TIR-NBS-LRR class) family] 0.339 -0.022
85 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] 0.338 0.288
86 259320_at AT3G01080 ATWRKY58, WRKY DNA-BINDING PROTEIN 58, WRKY58, WRKY DNA-binding protein 58 0.329 0.027
87 246293_at AT3G56710 SIB1, sigma factor binding protein 1 0.327 0.353
88 264958_at AT1G76960 unknown 0.327 0.117
89 254032_at AT4G25940 [ENTH/ANTH/VHS superfamily protein] 0.322 0.280
90 263202_at AT1G05630 5PTASE13, inositol-polyphosphate 5-phosphatase 13, AT5PTASE13, Arabidopsis thaliana inositol-polyphosphate 5-phosphatase 13 0.322 0.055
91 248821_at AT5G47070 [Protein kinase superfamily protein] 0.318 0.122
92 252470_at AT3G46930 [Protein kinase superfamily protein] 0.317 0.072
93 259852_at AT1G72280 AERO1, endoplasmic reticulum oxidoreductins 1, ERO1, endoplasmic reticulum oxidoreductins 1 0.316 0.191
94 255923_at AT1G22180 [Sec14p-like phosphatidylinositol transfer family protein] 0.315 0.166
95 260396_at AT1G69720 HO3, heme oxygenase 3 0.314 0.007
96 258351_at AT3G17700 ATCNGC20, CYCLIC NUCLEOTIDE-GATED CHANNEL 20, CNBT1, cyclic nucleotide-binding transporter 1, CNGC20, cyclic nucleotide gated channel 20 0.310 0.106
97 249527_at AT5G38710 [Methylenetetrahydrofolate reductase family protein] 0.310 0.316
98 258682_at AT3G08720 ATPK19, Arabidopsis thaliana protein kinase 19, ATPK2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, ATS6K2, ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, S6K2, serine/threonine protein kinase 2 0.303 0.305
99 258787_at AT3G11840 PUB24, plant U-box 24 0.302 0.130
100 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 0.301 0.395
101 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G 0.299 0.124
102 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.484 -0.288
103 246251_at AT4G37220 [Cold acclimation protein WCOR413 family] -0.437 0.004
104 250860_at AT5G04770 ATCAT6, ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, CAT6, cationic amino acid transporter 6 -0.299 -0.112
105 267123_at AT2G23560 ATMES7, ARABIDOPSIS THALIANA METHYL ESTERASE 7, MES7, methyl esterase 7 -0.263 -0.021
106 251084_at AT5G01520 AIRP2, ABA Insensitive RING Protein 2, AtAIRP2 -0.257 0.097
107 262760_at AT1G10770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.251 -0.076
108 265265_at AT2G42900 [Plant basic secretory protein (BSP) family protein] -0.233 -0.077
109 249797_at AT5G23750 [Remorin family protein] -0.232 -0.087
110 251141_at AT5G01075 [Glycosyl hydrolase family 35 protein] -0.230 -0.048
111 246432_at AT5G17490 AtRGL3, RGL3, RGA-like protein 3 -0.228 0.026
112 259103_at AT3G11690 unknown -0.212 0.034
113 250408_at AT5G10930 CIPK5, CBL-interacting protein kinase 5, SnRK3.24, SNF1-RELATED PROTEIN KINASE 3.24 -0.212 -0.250
114 246797_at AT5G26790 unknown -0.202 -0.100
115 250751_at AT5G05890 [UDP-Glycosyltransferase superfamily protein] -0.197 -0.112
116 262598_at AT1G15260 unknown -0.197 -0.108
117 261941_at AT1G22490 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.196 -0.007
118 266845_at AT2G26110 unknown -0.194 0.010
119 260353_at AT1G69230 SP1L2, SPIRAL1-like2 -0.189 -0.014
120 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.187 0.240
121 262421_at AT1G50290 unknown -0.181 -0.128
122 251320_at AT3G61530 PANB2 -0.181 0.087
123 260989_at AT1G53450 unknown -0.175 -0.012
124 245243_at AT1G44414 unknown -0.175 -0.094
125 263124_at AT1G78480 [Prenyltransferase family protein] -0.175 0.043
126 259801_at AT1G72230 [Cupredoxin superfamily protein] -0.173 -0.031
127 254024_at AT4G25780 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.173 -0.400
128 258943_at AT3G10400 U11/U12-31K, U11/U12-31K -0.171 0.008
129 247965_at AT5G56540 AGP14, arabinogalactan protein 14, ATAGP14 -0.171 -0.145
130 264860_at AT1G24290 [AAA-type ATPase family protein] -0.170 0.024
131 256813_at AT3G21360 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.170 -0.107
132 253667_at AT4G30170 [Peroxidase family protein] -0.167 0.045
133 253877_at AT4G27435 unknown -0.164 -0.036
134 261681_at AT1G47340 [F-box and associated interaction domains-containing protein] -0.159 -0.043
135 251009_at AT5G02640 unknown -0.159 -0.065
136 262831_at AT1G14730 [Cytochrome b561/ferric reductase transmembrane protein family] -0.157 -0.078
137 247992_at AT5G56520 unknown -0.157 0.009
138 255342_at AT4G04510 CRK38, cysteine-rich RLK (RECEPTOR-like protein kinase) 38 -0.155 -0.028
139 258183_at AT3G21550 AtDMP2, Arabidopsis thaliana DUF679 domain membrane protein 2, DMP2, DUF679 domain membrane protein 2 -0.153 -0.055
140 251297_at AT3G62020 GLP10, germin-like protein 10 -0.152 -0.063
141 265985_at AT2G24220 ATPUP5, purine permease 5, PUP5, purine permease 5 -0.152 0.041
142 246387_at AT1G77400 unknown -0.151 -0.183
143 251402_at AT3G60290 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.150 -0.011
144 247882_at AT5G57785 unknown -0.149 -0.143
145 253811_at AT4G28190 ULT, ULTRAPETALA, ULT1, ULTRAPETALA1 -0.148 -0.153
146 258091_at AT3G14560 unknown -0.144 -0.035
147 259463_at AT1G18950 [DDT domain superfamily] -0.143 -0.032
148 250089_at AT5G17320 HDG9, homeodomain GLABROUS 9 -0.143 -0.031
149 245386_at AT4G14010 RALFL32, ralf-like 32 -0.142 -0.051
150 253317_at AT4G33960 unknown -0.142 -0.090
151 251856_at AT3G54720 AMP1, ALTERED MERISTEM PROGRAM 1, AtAMP1, COP2, CONSTITUTIVE MORPHOGENESIS 2, HPT, HAUPTLING, MFO1, Multifolia, PT, PRIMORDIA TIMING -0.142 -0.067
152 259021_at AT3G07540 [Actin-binding FH2 (formin homology 2) family protein] -0.140 0.103
153 259023_at AT3G07510 unknown -0.138 -0.092
154 262055_at AT1G79970 unknown -0.137 -0.031
155 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 -0.137 0.404
156 261323_at AT1G44760 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.135 -0.089
157 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 -0.135 0.067
158 257573_at AT2G33990 iqd9, IQ-domain 9 -0.134 0.037
159 260264_at AT1G68500 unknown -0.133 -0.065
160 245363_at AT4G15120 [VQ motif-containing protein] -0.133 0.078
161 260033_at AT1G68760 ATNUDT1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, ATNUDX1, nudix hydrolase 1, NUDX1, nudix hydrolase 1, NUDX1, NUDIX HYDROLASE 1 -0.133 -0.004
162 266506_at AT2G47850 [Zinc finger C-x8-C-x5-C-x3-H type family protein] -0.131 -0.095
163 258704_at AT3G09780 ATCRR1, CCR1, CRINKLY4 related 1 -0.131 0.135
164 264744_at AT1G62050 [Ankyrin repeat family protein] -0.130 -0.140
165 248614_at AT5G49560 [Putative methyltransferase family protein] -0.130 -0.033
166 251964_at AT3G53370 [S1FA-like DNA-binding protein] -0.129 -0.048
167 257712_at AT3G27420 unknown -0.128 0.025
168 250120_at AT5G16490 RIC4, ROP-interactive CRIB motif-containing protein 4 -0.127 -0.020
169 245994_at AT5G20760 unknown -0.127 -0.041
170 254249_at AT4G23280 CRK20, cysteine-rich RLK (RECEPTOR-like protein kinase) 20 -0.125 0.031
171 260930_at AT1G02620 [Ras-related small GTP-binding family protein] -0.125 -0.087
172 248167_at AT5G54530 unknown -0.124 0.078
173 245208_at AT5G12330 LRP1, LATERAL ROOT PRIMORDIUM 1 -0.124 0.055
174 252949_at AT4G38670 [Pathogenesis-related thaumatin superfamily protein] -0.124 0.142
175 262700_at AT1G76020 [Thioredoxin superfamily protein] -0.123 0.012
176 249645_at AT5G36910 THI2.2, thionin 2.2 -0.123 -0.309
177 254853_at AT4G12080 AHL1, AT-hook motif nuclear-localized protein 1, ATAHL1 -0.123 0.108
178 251356_at AT3G61060 AtPP2-A13, phloem protein 2-A13, PP2-A13, phloem protein 2-A13 -0.123 0.078
179 250734_at AT5G06270 unknown -0.122 -0.031
180 247278_at AT5G64380 [Inositol monophosphatase family protein] -0.122 -0.077
181 245138_at AT2G45190 AFO, ABNORMAL FLORAL ORGANS, FIL, FILAMENTOUS FLOWER, YAB1, YABBY1 -0.121 -0.102
182 247123_at AT5G66050 [Wound-responsive family protein] -0.121 0.048
183 249958_at AT5G18970 [AWPM-19-like family protein] -0.121 -0.028
184 251330_at AT3G61550 [RING/U-box superfamily protein] -0.121 -0.140
185 267266_at AT2G23150 ATNRAMP3, NRAMP3, natural resistance-associated macrophage protein 3 -0.120 0.062
186 248975_at AT5G45040 CYTC6A, cytochrome c6A -0.120 -0.070
187 252412_at AT3G47295 unknown -0.118 -0.096
188 259934_at AT1G71340 AtGDPD4, GDPD4, glycerophosphodiester phosphodiesterase 4 -0.118 -0.066
189 259881_at AT1G76820 [eukaryotic translation initiation factor 2 (eIF-2) family protein] -0.118 -0.080
190 263729_at AT1G60080 [3'-5'-exoribonuclease family protein] -0.118 -0.050
191 258209_at AT3G14060 unknown -0.117 0.056
192 255509_at AT4G02210 unknown -0.116 -0.028
193 255427_at AT4G03380 unknown -0.115 0.055
194 267598_at AT2G33010 [Ubiquitin-associated (UBA) protein] -0.115 -0.014
195 252210_at AT3G50410 OBP1, OBF binding protein 1 -0.114 -0.006
196 255779_at AT1G18650 PDCB3, plasmodesmata callose-binding protein 3 -0.114 -0.069
197 247715_at AT5G59360 unknown -0.114 -0.108
198 254235_at AT4G23750 CRF2, cytokinin response factor 2, TMO3, TARGET OF MONOPTEROS 3 -0.114 -0.174
199 257823_at AT3G25190 [Vacuolar iron transporter (VIT) family protein] -0.113 -0.003
200 246510_at AT5G15410 ATCNGC2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, CNGC2, CYCLIC NUCLEOTIDE GATED CHANNEL 2, DND1, DEFENSE NO DEATH 1 -0.113 -0.028
201 251976_at AT3G53240 AtRLP45, receptor like protein 45, RLP45, receptor like protein 45 -0.113 -0.071