4.0:Information of module
php
In comparison with rGRF3x35S:GIF help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006970 response to osmotic stress BP 2.852e-13
GO:0009651 response to salt stress BP 5.289e-13
GO:1902578 single-organism localization BP 2.806e-10
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044283 small molecule biosynthetic process BP 2.683e-06
GO:0008652 cellular amino acid biosynthetic process BP 2.541e-05
GO:1901576 organic substance biosynthetic process BP 3.224e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
php		 Log2 signal ratio
rGRF3x35S:GIF
1 267509_at AT2G45660 AGL20, AGAMOUS-like 20, ATSOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1, SOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1 0.504 0.018
2 246888_at AT5G26270 unknown 0.297 0.144
3 260475_at AT1G11080 scpl31, serine carboxypeptidase-like 31 0.288 0.523
4 264511_at AT1G09350 AtGolS3, galactinol synthase 3, GolS3, galactinol synthase 3 0.256 -0.010
5 248337_at AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A 0.246 0.047
6 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] 0.224 -0.054
7 256597_at AT3G28500 [60S acidic ribosomal protein family] 0.214 -0.055
8 251026_at AT5G02200 FHL, far-red-elongated hypocotyl1-like 0.210 0.019
9 251197_at AT3G62960 [Thioredoxin superfamily protein] 0.203 0.085
10 245885_at AT5G09440 EXL4, EXORDIUM like 4 0.199 0.116
11 262322_at AT1G27590 unknown 0.187 0.064
12 251292_at AT3G61920 unknown 0.175 -0.046
13 259789_at AT1G29395 COR413-TM1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COR413IM1, COLD REGULATED 314 INNER MEMBRANE 1, COR414-TM1, cold regulated 414 thylakoid membrane 1 0.171 0.134
14 254996_at AT4G10390 [Protein kinase superfamily protein] 0.171 -0.019
15 250910_at AT5G03720 AT-HSFA3, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, HSFA3, heat shock transcription factor A3 0.169 0.019
16 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] 0.162 0.034
17 256099_at AT1G13710 CYP78A5, cytochrome P450, family 78, subfamily A, polypeptide 5, KLU, KLUH 0.160 0.076
18 264729_at AT1G22990 HIPP22, heavy metal associated isoprenylated plant protein 22 0.158 0.050
19 257527_at AT3G01880 unknown 0.149 0.068
20 249850_at AT5G23240 DJC76, DNA J protein C76 0.148 0.121
21 252213_at AT3G50210 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.147 0.066
22 263574_at AT2G16990 [Major facilitator superfamily protein] 0.147 0.004
23 265005_at AT1G61667 unknown 0.147 0.037
24 250028_at AT5G18130 unknown 0.146 0.158
25 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.145 -0.014
26 248091_at AT5G55120 galactose-1-phosphate guanylyltransferase (GDP)s;GDP-D-glucose phosphorylases;quercetin 4'-O-glucosyltransferases 0.145 -0.018
27 254971_at AT4G10380 AtNIP5;1, NIP5;1, NOD26-like intrinsic protein 5;1, NLM6, NOD26-LIKE MIP 6, NLM8, NOD26-LIKE MIP 8 0.144 0.004
28 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 0.141 0.082
29 255286_at AT4G04650 [RNA-directed DNA polymerase (reverse transcriptase)-related family protein] 0.140 0.097
30 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.140 0.214
31 245728_at AT1G73340 [Cytochrome P450 superfamily protein] 0.133 0.132
32 264882_at AT1G61110 anac025, NAC domain containing protein 25, NAC025, NAC domain containing protein 25 0.133 0.109
33 250381_at AT5G11610 [Exostosin family protein] 0.132 0.066
34 257300_at AT3G28080 UMAMIT47, Usually multiple acids move in and out Transporters 47 0.130 0.027
35 265032_at AT1G61580 ARP2, ARABIDOPSIS RIBOSOMAL PROTEIN 2, RPL3B, R-protein L3 B 0.129 -0.038
36 257336_at ATMG01410 ORF204, open reading frame 204 0.128 -0.040
37 246388_at AT1G77405 [Pentatricopeptide repeat (PPR) superfamily protein] 0.128 0.086
38 256621_at AT3G24450 [Heavy metal transport/detoxification superfamily protein ] 0.128 0.149
39 257129_at AT3G20100 CYP705A19, cytochrome P450, family 705, subfamily A, polypeptide 19 0.126 0.093
40 245864_at AT1G58070 unknown 0.126 0.036
41 253513_at AT4G31760 [Peroxidase superfamily protein] 0.126 0.053
42 249800_at AT5G23660 AtSWEET12, MTN3, homolog of Medicago truncatula MTN3, SWEET12 0.124 0.083
43 265012_at AT1G24470 ATKCR2, KCR2, beta-ketoacyl reductase 2 0.124 0.172
44 254633_at AT4G18640 MRH1, morphogenesis of root hair 1 0.123 0.062
45 264907_at AT2G17280 [Phosphoglycerate mutase family protein] 0.122 0.101
46 262605_at AT1G15170 [MATE efflux family protein] 0.122 0.036
47 245671_at AT1G28230 ATPUP1, PUP1, purine permease 1 0.120 0.115
48 250483_at AT5G10300 AtHNL, ATMES5, ARABIDOPSIS THALIANA METHYL ESTERASE 5, HNL, HYDROXYNITRILE LYASE, MES5, methyl esterase 5 0.118 -0.042
49 251169_at AT3G63210 MARD1, MEDIATOR OF ABA-REGULATED DORMANCY 1 0.118 0.130
50 249209_at AT5G42620 [metalloendopeptidases] 0.118 0.029
51 247339_at AT5G63690 [Nucleic acid-binding, OB-fold-like protein] 0.116 0.007
52 250301_at AT5G11970 unknown 0.116 0.039
53 257672_at AT3G20300 unknown 0.116 0.044
54 263498_at AT2G42610 LSH10, LIGHT SENSITIVE HYPOCOTYLS 10 0.116 -0.010
55 256710_at AT3G30350 GLV3, GOLVEN 3, RGF4, root meristem growth factor 4 0.114 -0.005
56 262096_at AT1G56010 anac021, Arabidopsis NAC domain containing protein 21, ANAC022, Arabidopsis NAC domain containing protein 22, NAC1, NAC domain containing protein 1 0.113 -0.015
57 250216_at AT5G14090 AtLAZY1, LAZY1, LAZY 1 0.111 0.171
58 256528_at AT1G66140 ZFP4, zinc finger protein 4 0.110 -0.140
59 256935_at AT3G22570 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.110 0.094
60 260979_at AT1G53510 ATMPK18, ARABIDOPSIS THALIANA MAP KINASE 18, MPK18, mitogen-activated protein kinase 18 0.109 -0.012
61 258287_at AT3G15990 SULTR3;4, sulfate transporter 3;4 0.109 -0.008
62 248549_at AT5G50310 [Galactose oxidase/kelch repeat superfamily protein] 0.108 0.003
63 250874_at AT5G04010 [F-box family protein] 0.107 0.018
64 258561_at AT3G05960 ATSTP6, SUGAR TRANSPORTER 6, STP6, sugar transporter 6 0.106 0.005
65 248116_at AT5G55020 ATMYB120, MYB120, myb domain protein 120 0.105 0.050
66 250231_at AT5G13910 LEP, LEAFY PETIOLE 0.105 0.063
67 252685_at AT3G44410 [pseudogene] 0.104 0.125
68 254583_at AT4G19480 unknown 0.104 0.025
69 247155_at AT5G65750 [2-oxoglutarate dehydrogenase, E1 component] 0.104 -0.033
70 252623_at AT3G45320 unknown 0.103 0.100
71 263923_at AT2G36485 [ENTH/VHS family protein] 0.101 -0.068
72 251346_at AT3G60980 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.101 -0.046
73 250561_at AT5G08030 AtGDPD6, GDPD6, glycerophosphodiester phosphodiesterase 6 -0.513 -0.324
74 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.433 0.030
75 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.405 0.106
76 256928_at AT3G22590 CDC73, PHP, PLANT HOMOLOGOUS TO PARAFIBROMIN -0.392 -0.012
77 250064_at AT5G17890 CHS3, CHILLING SENSITIVE 3, DAR4, DA1-related protein 4 -0.385 -0.033
78 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 -0.353 0.084
79 260101_at AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 -0.291 0.141
80 257061_at AT3G18250 [Putative membrane lipoprotein] -0.290 0.092
81 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.282 0.014
82 264514_at AT1G09500 [NAD(P)-binding Rossmann-fold superfamily protein] -0.280 -0.064
83 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.246 0.221
84 245148_at AT2G45220 PME17, pectin methylesterase 17 -0.225 0.167
85 262930_at AT1G65690 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.213 0.125
86 250550_at AT5G07870 [HXXXD-type acyl-transferase family protein] -0.198 0.025
87 247111_at AT5G65880 unknown -0.178 -0.027
88 249612_at AT5G37290 [ARM repeat superfamily protein] -0.172 -0.109
89 250537_at AT5G08565 [Transcription initiation Spt4-like protein] -0.172 -0.056
90 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 -0.168 -0.091
91 247814_at AT5G58310 ATMES18, ARABIDOPSIS THALIANA METHYL ESTERASE 18, MES18, methyl esterase 18 -0.159 0.066
92 259385_at AT1G13470 unknown -0.157 -0.052
93 261375_at AT1G53160 FTM6, FLORAL TRANSITION AT THE MERISTEM6, SPL4, squamosa promoter binding protein-like 4 -0.154 -0.086
94 245567_at AT4G14630 GLP9, germin-like protein 9 -0.153 0.001
95 255866_at AT2G30350 [Excinuclease ABC, C subunit, N-terminal] -0.152 -0.015
96 256096_at AT1G13650 unknown -0.150 -0.296
97 252820_at AT3G42640 AHA8, H(+)-ATPase 8, HA8, H(+)-ATPase 8 -0.150 -0.003
98 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 -0.146 0.079
99 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.139 -0.255
100 260560_at AT2G43590 [Chitinase family protein] -0.134 -0.164
101 259062_at AT3G07440 unknown -0.133 -0.003
102 246095_at AT5G19310 CHR23, chromatin remodeling 23 -0.133 -0.037
103 254201_at AT4G24130 unknown -0.131 -0.038
104 246254_at AT4G36450 ATMPK14, mitogen-activated protein kinase 14, MPK14, MPK14, mitogen-activated protein kinase 14 -0.130 0.027
105 250942_at AT5G03350 [Legume lectin family protein] -0.129 0.073
106 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 -0.129 0.056
107 254423_at AT4G21610 LOL2, lsd one like 2 -0.129 0.007
108 245449_at AT4G16870 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] -0.129 0.186
109 250043_at AT5G18430 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.127 -0.212
110 256548_at AT3G14770 AtSWEET2, SWEET2 -0.127 -0.217
111 258867_at AT3G03130 unknown -0.125 -0.149
112 248812_at AT5G47330 [alpha/beta-Hydrolases superfamily protein] -0.122 0.033
113 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 -0.121 -0.115
114 256959_at AT3G13440 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.121 0.006
115 249362_at AT5G40550 AtSGF29b, SGF29b, SaGa associated Factor 29 b -0.121 -0.077
116 265886_at AT2G25620 AtDBP1, DNA-binding protein phosphatase 1, DBP1, DNA-binding protein phosphatase 1 -0.121 -0.122
117 260640_at AT1G53350 [Disease resistance protein (CC-NBS-LRR class) family] -0.119 0.048
118 245367_at AT4G16265 NRPB9B, NRPD9B, NRPE9B -0.119 -0.053
119 264261_at AT1G09240 ATNAS3, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, NAS3, nicotianamine synthase 3 -0.118 -0.018
120 257476_at AT1G80960 [F-box and Leucine Rich Repeat domains containing protein] -0.116 0.127
121 267205_at AT2G30820 unknown -0.116 0.006
122 254039_at AT4G25840 GPP1, glycerol-3-phosphatase 1 -0.116 -0.040
123 265907_at AT2G25650 [DNA-binding storekeeper protein-related transcriptional regulator] -0.113 0.077
124 247432_at AT5G62500 ATEB1, ATEB1B, END BINDING PROTEIN 1B, EB1B, end binding protein 1B -0.112 -0.078
125 263674_at AT2G04790 unknown -0.112 -0.177
126 259210_at AT3G09150 ATHY2, ARABIDOPSIS ELONGATED HYPOCOTYL 2, GUN3, GENOMES UNCOUPLED 3, HY2, ELONGATED HYPOCOTYL 2 -0.111 -0.054
127 258184_at AT3G21510 AHP1, histidine-containing phosphotransmitter 1 -0.111 0.000
128 261087_at AT1G17350 [NADH:ubiquinone oxidoreductase intermediate-associated protein 30] -0.107 -0.049
129 262113_at AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 -0.107 -0.117
130 248169_at AT5G54610 ANK, ankyrin, BDA1, bian da 2 (becoming big in Chinese) -0.106 -0.021
131 245426_at AT4G17540 unknown -0.103 -0.086
132 262669_at AT1G62850 [Class I peptide chain release factor] -0.102 -0.020
133 250560_at AT5G08020 ATRPA70B, ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70B, RPA70-kDa subunit B -0.101 -0.145
134 256512_at AT1G33265 [Transmembrane proteins 14C] -0.100 -0.064
135 252433_at AT3G47560 [alpha/beta-Hydrolases superfamily protein] -0.099 0.022
136 257762_at AT3G23100 XRCC4, homolog of X-ray repair cross complementing 4 -0.099 -0.047
137 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 -0.099 0.237
138 254094_at AT4G25120 ATSRS2, ARABIDOPSIS THALIANA SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2, SRS2, SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2 -0.098 0.049
139 265852_at AT2G42350 [RING/U-box superfamily protein] -0.098 0.011
140 254175_at AT4G24050 [NAD(P)-binding Rossmann-fold superfamily protein] -0.096 -0.000
141 251215_at AT3G62510 [protein disulfide isomerase-related] -0.096 -0.118
142 249063_at AT5G44110 ABCI21, ATP-binding cassette A21, ATNAP2, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATPOP1, POP1 -0.095 -0.089
143 266064_at AT2G18780 [F-box and associated interaction domains-containing protein] -0.095 -0.042